Gchil2550.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2550.t1
Unique Name	Gchil2550.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	567

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1575391..1577185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708330.1
PFAMs	DUF647
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0010224,GO:0031967,GO:0031975,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
Evalue	1.71e-113
EggNOG OGs	KOG4249@1\|root,KOG4249@2759\|Eukaryota
Description	response to UV-B
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2550	Gchil2550	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1575391..1577185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2550.t1	Gchil2550.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1575391..1577185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2550.t1.start1	Gchil2550.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1575391..1575393 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2550.t1.CDS1	Gchil2550.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1575391..1576094 +
Gchil2550.t1.CDS2	Gchil2550.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1576189..1577185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2550.t1.exon1	Gchil2550.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1575391..1576094 +
Gchil2550.t1.exon2	Gchil2550.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1576189..1577185 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2550.t1.intron1	Gchil2550.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004400_pilon 1576095..1576188 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2550.t1.stop1	Gchil2550.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1577183..1577185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1575391..1577185+
coding sequence from alignment at tig00004400_pilon:1575391..1577185+

mRNA sequence

>Gchil2550.t1 ID=Gchil2550.t1|Name=Gchil2550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp
MLAFAPQLLVKLQPQTPSSLPAEWKPNRFSSGPPRNNLRRRNPEHAVVAW
LSKDPIQDSLIINSAKTSCLPVITVYHQDPNAVARTARSVGSRTVYLSAN
RNQFCFQVLQKHDLLTIPVRVRKEGYHQKSFRNESLLHASVAVPAMGSAS
PLLFEKNGGAVTTFYDVDEKEQKGAGRLVPQKEVDNRPFSDKVISWLTKI
YLPSGFPHTTTPDYISFTKYRTLQNLASAIMSVISTEALLFGLGLGKKVA
AGAAATSWVLKDGASYLAKILYGSVFGSKFDDDPKSWRIAADIVEDVGGA
IEILTPLFPLSYFLPLASLAVCLRGMSLMTGSATRHVVYRSLAASGMQNT
GDIATKGESQGVTMKMLGLGLGIIISSRIGQKYYILLGAYGSLAAVHIAA
NWRSVQCVQFSFFNKQRASILIDSHLDSLQMPTPHDVSSIERIILPPWKG
FEPSVKLGAGVAESVSTPADLEEARKLFRKEHFMIFVDKEKTMKILLRDT
AKPTDVLRAYYTAKKLKRSNSKTKEALTESLKFMRKNVDSFLKETAAAGW
DTRHMLLADDTVRIAW*

spliced messenger RNA

>Gchil2550.t1 ID=Gchil2550.t1|Name=Gchil2550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at tig00004400_pilon:1575391..1577185+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGCATTCGCACCGCAGTTGCTTGTGAAACTGCAACCACAAACCCC
GTCCAGCCTTCCCGCTGAATGGAAACCTAATCGTTTCTCATCTGGACCAC
CAAGAAATAATCTGAGGCGGCGAAATCCAGAGCACGCAGTTGTCGCCTGG
CTATCAAAGGATCCAATCCAAGATTCACTTATCATCAATTCTGCGAAGAC
CTCCTGTCTTCCCGTCATAACAGTTTATCACCAAGATCCAAATGCTGTAG
CTCGAACGGCGCGGTCTGTTGGATCACGAACCGTTTACCTTTCTGCAAAT
CGGAATCAATTTTGTTTTCAAGTTCTACAAAAACACGATCTTCTCACGAT
TCCAGTTCGTGTTCGAAAGGAGGGATATCATCAAAAATCGTTTAGAAATG
AATCGCTACTGCACGCATCGGTGGCTGTGCCGGCGATGGGATCAGCATCT
CCATTGCTCTTCGAGAAAAACGGCGGTGCGGTGACCACTTTTTATGATGT
CGATGAAAAAGAGCAAAAAGGTGCGGGACGCTTAGTTCCACAGAAAGAGG
TAGATAACAGGCCATTCTCAGATAAGGTCATTTCGTGGTTGACCAAAATT
TATCTTCCAAGTGGGTTTCCTCACACCACGACACCAGACTATATATCTTT
CACGAAGTATCGCACTCTACAAAATCTTGCCTCTGCCATTATGTCGGTCA
TCAGCACCGAGGCATTGTTGTTCGGTTTGGGACTCGGGAAAAAGGTTGCA
GCTGGTGCAGCTGCGACGAGCTGGGTACTAAAAGATGGAGCCTCGTACCT
TGCAAAGATTCTATACGGAAGTGTTTTTGGTTCAAAGTTTGATGATGACC
CGAAGAGCTGGAGGATTGCTGCGGACATTGTGGAAGATGTCGGTGGCGCC
ATCGAAATTTTGACACCTCTATTCCCGCTTTCCTACTTTTTGCCGTTGGC
CTCTCTAGCAGTTTGTCTAAGAGGCATGTCTCTAATGACGGGATCAGCCA
CACGTCATGTAGTTTATCGCTCTCTTGCAGCGAGCGGCATGCAGAACACC
GGAGATATTGCTACCAAGGGAGAATCACAGGGTGTGACGATGAAAATGCT
TGGCCTTGGACTCGGGATCATCATTTCTTCAAGAATTGGTCAAAAGTACT
ACATCTTACTCGGCGCATATGGCTCACTTGCAGCCGTTCATATTGCTGCT
AACTGGAGATCTGTACAGTGCGTGCAGTTTTCGTTCTTCAACAAGCAAAG
AGCGTCAATACTTATTGACAGTCATTTGGATAGTTTGCAAATGCCTACTC
CGCACGACGTATCTTCAATCGAGCGGATTATTTTGCCTCCATGGAAGGGC
TTTGAACCTTCTGTTAAGCTGGGTGCTGGGGTCGCGGAATCTGTGTCTAC
TCCCGCGGACCTAGAGGAGGCGAGAAAATTATTCAGAAAGGAACACTTTA
TGATTTTTGTTGACAAGGAGAAGACCATGAAAATCCTGTTACGGGACACT
GCGAAACCAACCGATGTTTTGCGGGCCTATTATACAGCAAAGAAGTTGAA
GAGGTCTAACAGTAAGACAAAGGAAGCACTGACAGAGTCACTGAAGTTCA
TGCGGAAGAATGTTGACTCGTTTTTGAAGGAAACTGCAGCAGCGGGATGG
GACACCCGTCACATGTTGCTTGCAGACGATACTGTGCGAATAGCATGGTG
A

protein sequence of Gchil2550.t1

>Gchil2550.t1 ID=Gchil2550.t1|Name=Gchil2550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=567bp
MLAFAPQLLVKLQPQTPSSLPAEWKPNRFSSGPPRNNLRRRNPEHAVVAW
LSKDPIQDSLIINSAKTSCLPVITVYHQDPNAVARTARSVGSRTVYLSAN
RNQFCFQVLQKHDLLTIPVRVRKEGYHQKSFRNESLLHASVAVPAMGSAS
PLLFEKNGGAVTTFYDVDEKEQKGAGRLVPQKEVDNRPFSDKVISWLTKI
YLPSGFPHTTTPDYISFTKYRTLQNLASAIMSVISTEALLFGLGLGKKVA
AGAAATSWVLKDGASYLAKILYGSVFGSKFDDDPKSWRIAADIVEDVGGA
IEILTPLFPLSYFLPLASLAVCLRGMSLMTGSATRHVVYRSLAASGMQNT
GDIATKGESQGVTMKMLGLGLGIIISSRIGQKYYILLGAYGSLAAVHIAA
NWRSVQCVQFSFFNKQRASILIDSHLDSLQMPTPHDVSSIERIILPPWKG
FEPSVKLGAGVAESVSTPADLEEARKLFRKEHFMIFVDKEKTMKILLRDT
AKPTDVLRAYYTAKKLKRSNSKTKEALTESLKFMRKNVDSFLKETAAAGW
DTRHMLLADDTVRIAW*

mRNA from alignment at tig00004400_pilon:1575391..1577185+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2550.t1 ID=Gchil2550.t1|Name=Gchil2550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1795bp|location=Sequence derived from alignment at tig00004400_pilon:1575391..1577185+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTAGCATTCGCACCGCAGTTGCTTGTGAAACTGCAACCACAAACCCC
GTCCAGCCTTCCCGCTGAATGGAAACCTAATCGTTTCTCATCTGGACCAC
CAAGAAATAATCTGAGGCGGCGAAATCCAGAGCACGCAGTTGTCGCCTGG
CTATCAAAGGATCCAATCCAAGATTCACTTATCATCAATTCTGCGAAGAC
CTCCTGTCTTCCCGTCATAACAGTTTATCACCAAGATCCAAATGCTGTAG
CTCGAACGGCGCGGTCTGTTGGATCACGAACCGTTTACCTTTCTGCAAAT
CGGAATCAATTTTGTTTTCAAGTTCTACAAAAACACGATCTTCTCACGAT
TCCAGTTCGTGTTCGAAAGGAGGGATATCATCAAAAATCGTTTAGAAATG
AATCGCTACTGCACGCATCGGTGGCTGTGCCGGCGATGGGATCAGCATCT
CCATTGCTCTTCGAGAAAAACGGCGGTGCGGTGACCACTTTTTATGATGT
CGATGAAAAAGAGCAAAAAGGTGCGGGACGCTTAGTTCCACAGAAAGAGG
TAGATAACAGGCCATTCTCAGATAAGGTCATTTCGTGGTTGACCAAAATT
TATCTTCCAAGTGGGTTTCCTCACACCACGACACCAGACTATATATCTTT
CACGAAGTATCGCACTCTACAAAATCTTGCCTCTGCCATTATGTCGGTCA
TCAGGTAAGTGCTTTTTACAATCAATGCTTGGCATAATTGCGTTCTATAC
AAGCTTTACTAATGAAAACGTTCATGTTCTTATGTTAAATCTCTAAAGCA
CCGAGGCATTGTTGTTCGGTTTGGGACTCGGGAAAAAGGTTGCAGCTGGT
GCAGCTGCGACGAGCTGGGTACTAAAAGATGGAGCCTCGTACCTTGCAAA
GATTCTATACGGAAGTGTTTTTGGTTCAAAGTTTGATGATGACCCGAAGA
GCTGGAGGATTGCTGCGGACATTGTGGAAGATGTCGGTGGCGCCATCGAA
ATTTTGACACCTCTATTCCCGCTTTCCTACTTTTTGCCGTTGGCCTCTCT
AGCAGTTTGTCTAAGAGGCATGTCTCTAATGACGGGATCAGCCACACGTC
ATGTAGTTTATCGCTCTCTTGCAGCGAGCGGCATGCAGAACACCGGAGAT
ATTGCTACCAAGGGAGAATCACAGGGTGTGACGATGAAAATGCTTGGCCT
TGGACTCGGGATCATCATTTCTTCAAGAATTGGTCAAAAGTACTACATCT
TACTCGGCGCATATGGCTCACTTGCAGCCGTTCATATTGCTGCTAACTGG
AGATCTGTACAGTGCGTGCAGTTTTCGTTCTTCAACAAGCAAAGAGCGTC
AATACTTATTGACAGTCATTTGGATAGTTTGCAAATGCCTACTCCGCACG
ACGTATCTTCAATCGAGCGGATTATTTTGCCTCCATGGAAGGGCTTTGAA
CCTTCTGTTAAGCTGGGTGCTGGGGTCGCGGAATCTGTGTCTACTCCCGC
GGACCTAGAGGAGGCGAGAAAATTATTCAGAAAGGAACACTTTATGATTT
TTGTTGACAAGGAGAAGACCATGAAAATCCTGTTACGGGACACTGCGAAA
CCAACCGATGTTTTGCGGGCCTATTATACAGCAAAGAAGTTGAAGAGGTC
TAACAGTAAGACAAAGGAAGCACTGACAGAGTCACTGAAGTTCATGCGGA
AGAATGTTGACTCGTTTTTGAAGGAAACTGCAGCAGCGGGATGGGACACC
CGTCACATGTTGCTTGCAGACGATACTGTGCGAATAGCATGGTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:1575391..1577185+

>Gchil2550.t1 ID=Gchil2550.t1|Name=Gchil2550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1701bp|location=Sequence derived from alignment at tig00004400_pilon:1575391..1577185+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTAGCATTCGCACCGCAGTTGCTTGTGAAACTGCAACCACAAACCCC
GTCCAGCCTTCCCGCTGAATGGAAACCTAATCGTTTCTCATCTGGACCAC
CAAGAAATAATCTGAGGCGGCGAAATCCAGAGCACGCAGTTGTCGCCTGG
CTATCAAAGGATCCAATCCAAGATTCACTTATCATCAATTCTGCGAAGAC
CTCCTGTCTTCCCGTCATAACAGTTTATCACCAAGATCCAAATGCTGTAG
CTCGAACGGCGCGGTCTGTTGGATCACGAACCGTTTACCTTTCTGCAAAT
CGGAATCAATTTTGTTTTCAAGTTCTACAAAAACACGATCTTCTCACGAT
TCCAGTTCGTGTTCGAAAGGAGGGATATCATCAAAAATCGTTTAGAAATG
AATCGCTACTGCACGCATCGGTGGCTGTGCCGGCGATGGGATCAGCATCT
CCATTGCTCTTCGAGAAAAACGGCGGTGCGGTGACCACTTTTTATGATGT
CGATGAAAAAGAGCAAAAAGGTGCGGGACGCTTAGTTCCACAGAAAGAGG
TAGATAACAGGCCATTCTCAGATAAGGTCATTTCGTGGTTGACCAAAATT
TATCTTCCAAGTGGGTTTCCTCACACCACGACACCAGACTATATATCTTT
CACGAAGTATCGCACTCTACAAAATCTTGCCTCTGCCATTATGTCGGTCA
TCAGCACCGAGGCATTGTTGTTCGGTTTGGGACTCGGGAAAAAGGTTGCA
GCTGGTGCAGCTGCGACGAGCTGGGTACTAAAAGATGGAGCCTCGTACCT
TGCAAAGATTCTATACGGAAGTGTTTTTGGTTCAAAGTTTGATGATGACC
CGAAGAGCTGGAGGATTGCTGCGGACATTGTGGAAGATGTCGGTGGCGCC
ATCGAAATTTTGACACCTCTATTCCCGCTTTCCTACTTTTTGCCGTTGGC
CTCTCTAGCAGTTTGTCTAAGAGGCATGTCTCTAATGACGGGATCAGCCA
CACGTCATGTAGTTTATCGCTCTCTTGCAGCGAGCGGCATGCAGAACACC
GGAGATATTGCTACCAAGGGAGAATCACAGGGTGTGACGATGAAAATGCT
TGGCCTTGGACTCGGGATCATCATTTCTTCAAGAATTGGTCAAAAGTACT
ACATCTTACTCGGCGCATATGGCTCACTTGCAGCCGTTCATATTGCTGCT
AACTGGAGATCTGTACAGTGCGTGCAGTTTTCGTTCTTCAACAAGCAAAG
AGCGTCAATACTTATTGACAGTCATTTGGATAGTTTGCAAATGCCTACTC
CGCACGACGTATCTTCAATCGAGCGGATTATTTTGCCTCCATGGAAGGGC
TTTGAACCTTCTGTTAAGCTGGGTGCTGGGGTCGCGGAATCTGTGTCTAC
TCCCGCGGACCTAGAGGAGGCGAGAAAATTATTCAGAAAGGAACACTTTA
TGATTTTTGTTGACAAGGAGAAGACCATGAAAATCCTGTTACGGGACACT
GCGAAACCAACCGATGTTTTGCGGGCCTATTATACAGCAAAGAAGTTGAA
GAGGTCTAACAGTAAGACAAAGGAAGCACTGACAGAGTCACTGAAGTTCA
TGCGGAAGAATGTTGACTCGTTTTTGAAGGAAACTGCAGCAGCGGGATGG
GACACCCGTCACATGTTGCTTGCAGACGATACTGTGCGAATAGCATGGTG
A