Gchil2548.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2548.t1
Unique Name	Gchil2548.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1569845..1570885 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706778.1
PFAMs	Mpv17_PMP22
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13347,ko:K13348
KEGG Pathway	ko04146,map04146
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0016020,GO:0016021,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Evalue	9.12e-43
EggNOG OGs	KOG1944@1\|root,KOG1944@2759\|Eukaryota
Description	Belongs to the peroxisomal membrane protein PXMP2 4 family
COG category	C
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2548	Gchil2548	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1569845..1570885 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2548.t1.stop1	Gchil2548.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1569845..1569847 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2548.t1.CDS1	Gchil2548.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1569845..1570885 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2548.t1.exon1	Gchil2548.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1569845..1570885 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2548.t1.start1	Gchil2548.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1570883..1570885 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2548.t1	Gchil2548.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1569845..1570885 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1569845..1570885-
coding sequence from alignment at tig00004400_pilon:1569845..1570885-

mRNA sequence

>Gchil2548.t1 ID=Gchil2548.t1|Name=Gchil2548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=347bp
MNYASCVSRVSVAFCNVSPTALSRYLTFSKSVCNPQRTSASSRNVHSSCF
GRFCSSKNVGRLTRLNLNLTRTSRASPRILSAPQEPSRQPIYAFDKVPTT
RPDWWDDEEEEDLDDCHALRFENTSPQVALGSGSGSFARNGRDGGSGGGE
DGKFNGDSEGPDRGLFAVLLATYLRAMSRNPILVKAITTSVIAFLGDVLA
QFLTQIGSSEVQWDMRRTLSITIWGFCFIGPTLHYWFSTLDRLYTNKYSV
LCKLLTDQLLFAPFFNSAFMIGVGTLEGHSFKEVTETVKSKLWTALKANW
MLWPAAQFINFSFVPKNLQVVYVNCVALVWNMIFMYISHSEHEAVA*

spliced messenger RNA

>Gchil2548.t1 ID=Gchil2548.t1|Name=Gchil2548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00004400_pilon:1569845..1570885- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTACGCCTCGTGTGTTTCTCGCGTTTCTGTGGCGTTCTGCAATGT
TTCCCCAACTGCACTATCTCGGTACTTAACCTTCTCGAAGTCCGTGTGCA
ACCCACAGCGGACGAGCGCGTCATCAAGAAATGTCCACAGCAGCTGCTTC
GGACGGTTTTGTTCATCCAAAAACGTTGGCCGTCTGACTCGACTTAATTT
GAATCTCACGCGAACATCACGAGCGTCGCCCCGCATCCTTTCAGCACCGC
AAGAACCCTCGAGGCAACCGATTTATGCATTTGACAAGGTACCCACTACC
CGGCCAGACTGGTGGGATGACGAAGAAGAAGAAGACCTCGACGATTGCCA
CGCCTTGCGATTTGAAAACACAAGTCCCCAAGTTGCGCTTGGTTCTGGCA
GTGGTAGTTTCGCGCGCAACGGTCGTGATGGCGGAAGTGGAGGAGGTGAG
GATGGAAAATTCAATGGCGACAGCGAAGGACCAGACCGGGGACTGTTTGC
CGTGTTACTGGCCACGTACTTGCGTGCCATGTCACGGAATCCAATCCTCG
TCAAAGCCATTACTACGTCAGTGATTGCCTTTTTGGGTGATGTTTTGGCT
CAGTTTCTCACTCAGATCGGCAGCAGTGAAGTTCAGTGGGACATGAGAAG
GACACTTTCGATTACAATTTGGGGCTTCTGTTTCATAGGCCCCACTCTTC
ACTACTGGTTTTCCACTCTTGACCGACTCTATACGAACAAATACTCCGTT
CTTTGCAAGCTTCTCACCGATCAATTACTCTTCGCCCCATTCTTTAACTC
AGCGTTCATGATAGGCGTGGGAACACTTGAAGGGCATTCGTTCAAGGAAG
TTACTGAAACTGTGAAGTCTAAGCTATGGACTGCGTTGAAGGCAAATTGG
ATGTTGTGGCCGGCTGCGCAATTCATCAACTTTTCTTTTGTTCCGAAGAA
TCTTCAAGTTGTGTATGTCAATTGTGTTGCCCTCGTGTGGAACATGATCT
TCATGTACATCTCACATTCAGAGCACGAAGCCGTTGCATAA

protein sequence of Gchil2548.t1

>Gchil2548.t1 ID=Gchil2548.t1|Name=Gchil2548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=347bp
MNYASCVSRVSVAFCNVSPTALSRYLTFSKSVCNPQRTSASSRNVHSSCF
GRFCSSKNVGRLTRLNLNLTRTSRASPRILSAPQEPSRQPIYAFDKVPTT
RPDWWDDEEEEDLDDCHALRFENTSPQVALGSGSGSFARNGRDGGSGGGE
DGKFNGDSEGPDRGLFAVLLATYLRAMSRNPILVKAITTSVIAFLGDVLA
QFLTQIGSSEVQWDMRRTLSITIWGFCFIGPTLHYWFSTLDRLYTNKYSV
LCKLLTDQLLFAPFFNSAFMIGVGTLEGHSFKEVTETVKSKLWTALKANW
MLWPAAQFINFSFVPKNLQVVYVNCVALVWNMIFMYISHSEHEAVA*

mRNA from alignment at tig00004400_pilon:1569845..1570885-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2548.t1 ID=Gchil2548.t1|Name=Gchil2548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00004400_pilon:1569845..1570885- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTACGCCTCGTGTGTTTCTCGCGTTTCTGTGGCGTTCTGCAATGT
TTCCCCAACTGCACTATCTCGGTACTTAACCTTCTCGAAGTCCGTGTGCA
ACCCACAGCGGACGAGCGCGTCATCAAGAAATGTCCACAGCAGCTGCTTC
GGACGGTTTTGTTCATCCAAAAACGTTGGCCGTCTGACTCGACTTAATTT
GAATCTCACGCGAACATCACGAGCGTCGCCCCGCATCCTTTCAGCACCGC
AAGAACCCTCGAGGCAACCGATTTATGCATTTGACAAGGTACCCACTACC
CGGCCAGACTGGTGGGATGACGAAGAAGAAGAAGACCTCGACGATTGCCA
CGCCTTGCGATTTGAAAACACAAGTCCCCAAGTTGCGCTTGGTTCTGGCA
GTGGTAGTTTCGCGCGCAACGGTCGTGATGGCGGAAGTGGAGGAGGTGAG
GATGGAAAATTCAATGGCGACAGCGAAGGACCAGACCGGGGACTGTTTGC
CGTGTTACTGGCCACGTACTTGCGTGCCATGTCACGGAATCCAATCCTCG
TCAAAGCCATTACTACGTCAGTGATTGCCTTTTTGGGTGATGTTTTGGCT
CAGTTTCTCACTCAGATCGGCAGCAGTGAAGTTCAGTGGGACATGAGAAG
GACACTTTCGATTACAATTTGGGGCTTCTGTTTCATAGGCCCCACTCTTC
ACTACTGGTTTTCCACTCTTGACCGACTCTATACGAACAAATACTCCGTT
CTTTGCAAGCTTCTCACCGATCAATTACTCTTCGCCCCATTCTTTAACTC
AGCGTTCATGATAGGCGTGGGAACACTTGAAGGGCATTCGTTCAAGGAAG
TTACTGAAACTGTGAAGTCTAAGCTATGGACTGCGTTGAAGGCAAATTGG
ATGTTGTGGCCGGCTGCGCAATTCATCAACTTTTCTTTTGTTCCGAAGAA
TCTTCAAGTTGTGTATGTCAATTGTGTTGCCCTCGTGTGGAACATGATCT
TCATGTACATCTCACATTCAGAGCACGAAGCCGTTGCATAA

Coding sequence (CDS) from alignment at tig00004400_pilon:1569845..1570885-

>Gchil2548.t1 ID=Gchil2548.t1|Name=Gchil2548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00004400_pilon:1569845..1570885- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTACGCCTCGTGTGTTTCTCGCGTTTCTGTGGCGTTCTGCAATGT
TTCCCCAACTGCACTATCTCGGTACTTAACCTTCTCGAAGTCCGTGTGCA
ACCCACAGCGGACGAGCGCGTCATCAAGAAATGTCCACAGCAGCTGCTTC
GGACGGTTTTGTTCATCCAAAAACGTTGGCCGTCTGACTCGACTTAATTT
GAATCTCACGCGAACATCACGAGCGTCGCCCCGCATCCTTTCAGCACCGC
AAGAACCCTCGAGGCAACCGATTTATGCATTTGACAAGGTACCCACTACC
CGGCCAGACTGGTGGGATGACGAAGAAGAAGAAGACCTCGACGATTGCCA
CGCCTTGCGATTTGAAAACACAAGTCCCCAAGTTGCGCTTGGTTCTGGCA
GTGGTAGTTTCGCGCGCAACGGTCGTGATGGCGGAAGTGGAGGAGGTGAG
GATGGAAAATTCAATGGCGACAGCGAAGGACCAGACCGGGGACTGTTTGC
CGTGTTACTGGCCACGTACTTGCGTGCCATGTCACGGAATCCAATCCTCG
TCAAAGCCATTACTACGTCAGTGATTGCCTTTTTGGGTGATGTTTTGGCT
CAGTTTCTCACTCAGATCGGCAGCAGTGAAGTTCAGTGGGACATGAGAAG
GACACTTTCGATTACAATTTGGGGCTTCTGTTTCATAGGCCCCACTCTTC
ACTACTGGTTTTCCACTCTTGACCGACTCTATACGAACAAATACTCCGTT
CTTTGCAAGCTTCTCACCGATCAATTACTCTTCGCCCCATTCTTTAACTC
AGCGTTCATGATAGGCGTGGGAACACTTGAAGGGCATTCGTTCAAGGAAG
TTACTGAAACTGTGAAGTCTAAGCTATGGACTGCGTTGAAGGCAAATTGG
ATGTTGTGGCCGGCTGCGCAATTCATCAACTTTTCTTTTGTTCCGAAGAA
TCTTCAAGTTGTGTATGTCAATTGTGTTGCCCTCGTGTGGAACATGATCT
TCATGTACATCTCACATTCAGAGCACGAAGCCGTTGCATAA