Gchil2538.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2538.t1
Unique NameGchil2538.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1543667..1544992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705445.1
Preferred nameETF1
PFAMseRF1_1,eRF1_2,eRF1_3
Max annot lvl2759|Eukaryota
KEGG koko:K03265,ko:K04043
KEGG TC1.A.33.1
KEGG Pathwayko03015,ko03018,ko04212,ko05152,map03015,map03018,map04212,map05152
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006417,GO:0006449,GO:0006464,GO:0006479,GO:0006518,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008213,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016149,GO:0018130,GO:0018444,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022411,GO:0023052,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0032774,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036211,GO:0036464,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051246,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990825,GO:1990904,GO:2000112
Evalue6.9e-217
EggNOG OGsCOG1503@1|root,KOG0688@2759|Eukaryota
Descriptiontranslation release factor activity
COG categoryJ
BRITEko00000,ko00001,ko03012,ko03019,ko03029,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2538Gchil2538Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1543667..1544992 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2538.t1.stop1Gchil2538.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1543667..1543669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2538.t1.CDS1Gchil2538.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1543667..1544992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2538.t1.exon1Gchil2538.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1543667..1544992 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2538.t1.start1Gchil2538.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1544990..1544992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2538.t1Gchil2538.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1543667..1544992 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2538.t1 ID=Gchil2538.t1|Name=Gchil2538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=442bp
MGEKDKSQDDDGDRAVQVWKIKKLIKALEQARGNGTSMISLIIPPRDQTS
RVNKMLSDEYGTASNIKSRVNRQSVLSAITSTQQRLKLYPKVPTNGLVIY
CGTIMNDQNKEREVLVDFEPFKPINTSLYLCDNKFHTEALASLLESDEKF
GFIVMDGNGALFGLLTGNTRTVLHKFSVDLPKKHGRGGQSALRFARLRLE
KRHNFVRKVAEIAVTQFIPDGQKVNVTGLILAGSADFKTDLYNSELFDQR
LKAKVLKTVDVSYGGENGFNQAIDLAAETLGNVKFIQEKKLVQRYFDEIS
KDTNKYCFGVLDTMRALEQGAVEILILWENMEHTRLELENPQTGEKVVKI
LSKEQMQDMSNFVEKESGVELETRDTELFVDWMAANYKDYGTQLEFITDR
SQEGAQFVQGFGGIGGLMRYEVNFEAYEEPDEDEDWEDLLG*
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spliced messenger RNA

>Gchil2538.t1 ID=Gchil2538.t1|Name=Gchil2538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00004400_pilon:1543667..1544992- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGAAAAAGATAAGAGCCAGGACGACGATGGCGACCGTGCCGTTCA
AGTCTGGAAAATCAAAAAGCTTATTAAAGCCCTGGAGCAAGCCCGTGGGA
ACGGAACTAGCATGATCTCACTCATCATTCCTCCTCGCGACCAGACTAGT
CGCGTTAACAAGATGCTCAGTGACGAATACGGCACAGCCTCTAACATCAA
GTCTCGCGTCAACCGTCAATCCGTTTTGAGTGCCATCACATCAACACAAC
AGCGCCTAAAACTGTACCCTAAAGTTCCTACAAATGGACTTGTCATCTAC
TGCGGGACCATTATGAACGACCAGAACAAGGAAAGAGAAGTTTTGGTAGA
TTTTGAGCCATTCAAGCCTATAAACACTTCGCTTTACTTGTGCGACAACA
AATTCCACACTGAAGCTCTTGCCAGTCTCCTCGAGTCTGATGAGAAGTTC
GGGTTTATAGTTATGGATGGAAATGGCGCTCTTTTCGGCCTTCTCACTGG
TAACACGAGAACCGTTCTCCACAAGTTTTCCGTCGATCTTCCGAAAAAGC
ATGGCCGTGGTGGGCAGTCGGCACTACGATTTGCTCGTCTTCGTCTAGAA
AAGCGTCATAACTTTGTTCGGAAGGTAGCCGAAATCGCCGTGACACAATT
TATTCCGGACGGCCAGAAAGTCAACGTAACGGGTCTCATTCTAGCTGGAT
CTGCTGATTTTAAGACTGACCTATACAACTCAGAGCTCTTTGACCAAAGA
TTGAAGGCCAAGGTACTAAAGACTGTTGATGTAAGCTACGGTGGGGAAAA
CGGTTTCAACCAGGCTATCGATCTGGCTGCTGAAACTCTTGGCAACGTCA
AATTTATTCAAGAAAAGAAGCTTGTGCAAAGATATTTTGATGAGATATCG
AAGGACACAAACAAGTACTGTTTTGGAGTACTAGACACTATGCGAGCTCT
AGAACAAGGTGCTGTTGAGATTCTCATTCTCTGGGAAAATATGGAGCACA
CAAGACTAGAACTTGAGAATCCACAAACAGGAGAAAAGGTCGTCAAGATT
CTTAGCAAAGAACAGATGCAAGACATGTCAAACTTTGTCGAGAAAGAAAG
TGGAGTCGAATTAGAAACGAGAGACACAGAACTCTTCGTGGACTGGATGG
CTGCTAACTACAAGGACTACGGTACCCAACTTGAGTTCATAACAGATCGC
TCTCAGGAAGGCGCACAGTTTGTGCAAGGCTTCGGAGGCATTGGGGGACT
CATGCGCTATGAAGTGAACTTCGAAGCATATGAAGAGCCTGATGAAGATG
AAGACTGGGAGGATCTTCTTGGATAG
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protein sequence of Gchil2538.t1

>Gchil2538.t1 ID=Gchil2538.t1|Name=Gchil2538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=442bp
MGEKDKSQDDDGDRAVQVWKIKKLIKALEQARGNGTSMISLIIPPRDQTS
RVNKMLSDEYGTASNIKSRVNRQSVLSAITSTQQRLKLYPKVPTNGLVIY
CGTIMNDQNKEREVLVDFEPFKPINTSLYLCDNKFHTEALASLLESDEKF
GFIVMDGNGALFGLLTGNTRTVLHKFSVDLPKKHGRGGQSALRFARLRLE
KRHNFVRKVAEIAVTQFIPDGQKVNVTGLILAGSADFKTDLYNSELFDQR
LKAKVLKTVDVSYGGENGFNQAIDLAAETLGNVKFIQEKKLVQRYFDEIS
KDTNKYCFGVLDTMRALEQGAVEILILWENMEHTRLELENPQTGEKVVKI
LSKEQMQDMSNFVEKESGVELETRDTELFVDWMAANYKDYGTQLEFITDR
SQEGAQFVQGFGGIGGLMRYEVNFEAYEEPDEDEDWEDLLG*
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mRNA from alignment at tig00004400_pilon:1543667..1544992-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2538.t1 ID=Gchil2538.t1|Name=Gchil2538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00004400_pilon:1543667..1544992- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGAAAAAGATAAGAGCCAGGACGACGATGGCGACCGTGCCGTTCA
AGTCTGGAAAATCAAAAAGCTTATTAAAGCCCTGGAGCAAGCCCGTGGGA
ACGGAACTAGCATGATCTCACTCATCATTCCTCCTCGCGACCAGACTAGT
CGCGTTAACAAGATGCTCAGTGACGAATACGGCACAGCCTCTAACATCAA
GTCTCGCGTCAACCGTCAATCCGTTTTGAGTGCCATCACATCAACACAAC
AGCGCCTAAAACTGTACCCTAAAGTTCCTACAAATGGACTTGTCATCTAC
TGCGGGACCATTATGAACGACCAGAACAAGGAAAGAGAAGTTTTGGTAGA
TTTTGAGCCATTCAAGCCTATAAACACTTCGCTTTACTTGTGCGACAACA
AATTCCACACTGAAGCTCTTGCCAGTCTCCTCGAGTCTGATGAGAAGTTC
GGGTTTATAGTTATGGATGGAAATGGCGCTCTTTTCGGCCTTCTCACTGG
TAACACGAGAACCGTTCTCCACAAGTTTTCCGTCGATCTTCCGAAAAAGC
ATGGCCGTGGTGGGCAGTCGGCACTACGATTTGCTCGTCTTCGTCTAGAA
AAGCGTCATAACTTTGTTCGGAAGGTAGCCGAAATCGCCGTGACACAATT
TATTCCGGACGGCCAGAAAGTCAACGTAACGGGTCTCATTCTAGCTGGAT
CTGCTGATTTTAAGACTGACCTATACAACTCAGAGCTCTTTGACCAAAGA
TTGAAGGCCAAGGTACTAAAGACTGTTGATGTAAGCTACGGTGGGGAAAA
CGGTTTCAACCAGGCTATCGATCTGGCTGCTGAAACTCTTGGCAACGTCA
AATTTATTCAAGAAAAGAAGCTTGTGCAAAGATATTTTGATGAGATATCG
AAGGACACAAACAAGTACTGTTTTGGAGTACTAGACACTATGCGAGCTCT
AGAACAAGGTGCTGTTGAGATTCTCATTCTCTGGGAAAATATGGAGCACA
CAAGACTAGAACTTGAGAATCCACAAACAGGAGAAAAGGTCGTCAAGATT
CTTAGCAAAGAACAGATGCAAGACATGTCAAACTTTGTCGAGAAAGAAAG
TGGAGTCGAATTAGAAACGAGAGACACAGAACTCTTCGTGGACTGGATGG
CTGCTAACTACAAGGACTACGGTACCCAACTTGAGTTCATAACAGATCGC
TCTCAGGAAGGCGCACAGTTTGTGCAAGGCTTCGGAGGCATTGGGGGACT
CATGCGCTATGAAGTGAACTTCGAAGCATATGAAGAGCCTGATGAAGATG
AAGACTGGGAGGATCTTCTTGGATAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1543667..1544992-

>Gchil2538.t1 ID=Gchil2538.t1|Name=Gchil2538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00004400_pilon:1543667..1544992- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGAAAAAGATAAGAGCCAGGACGACGATGGCGACCGTGCCGTTCA
AGTCTGGAAAATCAAAAAGCTTATTAAAGCCCTGGAGCAAGCCCGTGGGA
ACGGAACTAGCATGATCTCACTCATCATTCCTCCTCGCGACCAGACTAGT
CGCGTTAACAAGATGCTCAGTGACGAATACGGCACAGCCTCTAACATCAA
GTCTCGCGTCAACCGTCAATCCGTTTTGAGTGCCATCACATCAACACAAC
AGCGCCTAAAACTGTACCCTAAAGTTCCTACAAATGGACTTGTCATCTAC
TGCGGGACCATTATGAACGACCAGAACAAGGAAAGAGAAGTTTTGGTAGA
TTTTGAGCCATTCAAGCCTATAAACACTTCGCTTTACTTGTGCGACAACA
AATTCCACACTGAAGCTCTTGCCAGTCTCCTCGAGTCTGATGAGAAGTTC
GGGTTTATAGTTATGGATGGAAATGGCGCTCTTTTCGGCCTTCTCACTGG
TAACACGAGAACCGTTCTCCACAAGTTTTCCGTCGATCTTCCGAAAAAGC
ATGGCCGTGGTGGGCAGTCGGCACTACGATTTGCTCGTCTTCGTCTAGAA
AAGCGTCATAACTTTGTTCGGAAGGTAGCCGAAATCGCCGTGACACAATT
TATTCCGGACGGCCAGAAAGTCAACGTAACGGGTCTCATTCTAGCTGGAT
CTGCTGATTTTAAGACTGACCTATACAACTCAGAGCTCTTTGACCAAAGA
TTGAAGGCCAAGGTACTAAAGACTGTTGATGTAAGCTACGGTGGGGAAAA
CGGTTTCAACCAGGCTATCGATCTGGCTGCTGAAACTCTTGGCAACGTCA
AATTTATTCAAGAAAAGAAGCTTGTGCAAAGATATTTTGATGAGATATCG
AAGGACACAAACAAGTACTGTTTTGGAGTACTAGACACTATGCGAGCTCT
AGAACAAGGTGCTGTTGAGATTCTCATTCTCTGGGAAAATATGGAGCACA
CAAGACTAGAACTTGAGAATCCACAAACAGGAGAAAAGGTCGTCAAGATT
CTTAGCAAAGAACAGATGCAAGACATGTCAAACTTTGTCGAGAAAGAAAG
TGGAGTCGAATTAGAAACGAGAGACACAGAACTCTTCGTGGACTGGATGG
CTGCTAACTACAAGGACTACGGTACCCAACTTGAGTTCATAACAGATCGC
TCTCAGGAAGGCGCACAGTTTGTGCAAGGCTTCGGAGGCATTGGGGGACT
CATGCGCTATGAAGTGAACTTCGAAGCATATGAAGAGCCTGATGAAGATG
AAGACTGGGAGGATCTTCTTGGATAG
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