Gchil2537.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2537.t1
Unique NameGchil2537.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1543064..1543496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706882.1
Preferred namePHF5A
PFAMsPHF5
Max annot lvl2759|Eukaryota
KEGG koko:K12834
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005689,GO:0005737,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009410,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue1.38e-61
EggNOG OGsKOG1705@1|root,KOG1705@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2537Gchil2537Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1543064..1543496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2537.t1Gchil2537.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1543064..1543496 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2537.t1.start1Gchil2537.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1543064..1543066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2537.t1.CDS1Gchil2537.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1543064..1543228 +
Gchil2537.t1.CDS2Gchil2537.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1543338..1543496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2537.t1.exon1Gchil2537.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1543064..1543228 +
Gchil2537.t1.exon2Gchil2537.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1543338..1543496 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2537.t1.intron1Gchil2537.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1543229..1543337 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2537.t1.stop1Gchil2537.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1543494..1543496 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2537.t1 ID=Gchil2537.t1|Name=Gchil2537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=108bp
MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECN
YGSFQGKCIVCGNQGVSDAYYCVECTILEKDRDGCPKIVNVGTAKIDLVY
EKKKYKR*
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spliced messenger RNA

>Gchil2537.t1 ID=Gchil2537.t1|Name=Gchil2537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00004400_pilon:1543064..1543496+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAACATCACCCAGATCTTGTAATGTGTCGCAAGCAACCAGGTGT
AATAACAGGAAAGGTGTGTGAAAGATGCGAGGGCAAATGCGTAATATGCG
ATTCGTTAGTGTCACAGACGACACCGGCGCGTATTTGTGATGAATGTAAC
TACGGCTCATTTCAGGGGAAATGCATAGTATGTGGAAACCAAGGTGTATC
TGATGCTTATTACTGTGTCGAATGTACAATTTTGGAGAAAGATAGAGATG
GATGTCCAAAGATTGTTAACGTTGGAACCGCAAAGATAGATTTGGTGTAC
GAGAAAAAAAAGTACAAGAGGTAG
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protein sequence of Gchil2537.t1

>Gchil2537.t1 ID=Gchil2537.t1|Name=Gchil2537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=108bp
MSKHHPDLVMCRKQPGVITGKVCERCEGKCVICDSLVSQTTPARICDECN
YGSFQGKCIVCGNQGVSDAYYCVECTILEKDRDGCPKIVNVGTAKIDLVY
EKKKYKR*
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mRNA from alignment at tig00004400_pilon:1543064..1543496+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2537.t1 ID=Gchil2537.t1|Name=Gchil2537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=433bp|location=Sequence derived from alignment at tig00004400_pilon:1543064..1543496+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAAACATCACCCAGATCTTGTAATGTGTCGCAAGCAACCAGGTGT
AATAACAGGAAAGGTGTGTGAAAGATGCGAGGGCAAATGCGTAATATGCG
ATTCGTTAGTGTCACAGACGACACCGGCGCGTATTTGTGATGAATGTAAC
TACGGCTCATTTCAGGTAAGTGTTGACAATGCGCTCCGCATTCACCTCCA
TTTGTTTTCATGTTTAGTTTGAATTTGGAAACCATGCTAACGTCAAGCTG
TTGAGGGTGCTTGAGAATCCACAGGGGAAATGCATAGTATGTGGAAACCA
AGGTGTATCTGATGCTTATTACTGTGTCGAATGTACAATTTTGGAGAAAG
ATAGAGATGGATGTCCAAAGATTGTTAACGTTGGAACCGCAAAGATAGAT
TTGGTGTACGAGAAAAAAAAGTACAAGAGGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1543064..1543496+

>Gchil2537.t1 ID=Gchil2537.t1|Name=Gchil2537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=324bp|location=Sequence derived from alignment at tig00004400_pilon:1543064..1543496+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAAACATCACCCAGATCTTGTAATGTGTCGCAAGCAACCAGGTGT
AATAACAGGAAAGGTGTGTGAAAGATGCGAGGGCAAATGCGTAATATGCG
ATTCGTTAGTGTCACAGACGACACCGGCGCGTATTTGTGATGAATGTAAC
TACGGCTCATTTCAGGGGAAATGCATAGTATGTGGAAACCAAGGTGTATC
TGATGCTTATTACTGTGTCGAATGTACAATTTTGGAGAAAGATAGAGATG
GATGTCCAAAGATTGTTAACGTTGGAACCGCAAAGATAGATTTGGTGTAC
GAGAAAAAAAAGTACAAGAGGTAG
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