Gchil2533.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2533.t1
Unique NameGchil2533.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1508286..1508733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7209.EFO19308.2
Preferred nameUFM1
PFAMsUfm1
Max annot lvl33208|Metazoa
KEGG koko:K12162
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010646,GO:0010941,GO:0012505,GO:0019538,GO:0023051,GO:0032446,GO:0032501,GO:0033143,GO:0033146,GO:0033554,GO:0034976,GO:0036211,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051716,GO:0060548,GO:0065007,GO:0070647,GO:0071569,GO:0071704,GO:1901564,GO:1990564,GO:1990592
Evalue1.4e-47
EggNOG OGsKOG3483@1|root,KOG3483@2759|Eukaryota,3A62T@33154|Opisthokonta,3BSQK@33208|Metazoa,3D9K6@33213|Bilateria,40E6V@6231|Nematoda,1KZHZ@119089|Chromadorea
DescriptionUbiquitin-like modifier
COG categoryS
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2533Gchil2533Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1508286..1508733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2533.t1Gchil2533.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1508286..1508733 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2533.t1.stop1Gchil2533.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1508286..1508288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2533.t1.CDS1Gchil2533.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1508286..1508353 -
Gchil2533.t1.CDS2Gchil2533.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1508446..1508576 -
Gchil2533.t1.CDS3Gchil2533.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1508666..1508733 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2533.t1.exon1Gchil2533.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1508286..1508353 -
Gchil2533.t1.exon2Gchil2533.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1508446..1508576 -
Gchil2533.t1.exon3Gchil2533.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1508666..1508733 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2533.t1.intron1Gchil2533.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1508354..1508445 -
Gchil2533.t1.intron2Gchil2533.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1508577..1508665 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2533.t1.start1Gchil2533.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1508731..1508733 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2533.t1 ID=Gchil2533.t1|Name=Gchil2533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=89bp
MTDSGKVTFKIVLTSDPKLPFKVVNVPEKAPFTAVLKFAAEEFRVPAATS
AIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGSI*
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spliced messenger RNA

>Gchil2533.t1 ID=Gchil2533.t1|Name=Gchil2533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=267bp|location=Sequence derived from alignment at tig00004400_pilon:1508286..1508733- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGACAGCGGAAAAGTTACGTTCAAAATTGTGCTAACGTCCGACCC
GAAGCTCCCATTCAAGGTAGTTAATGTTCCTGAAAAGGCTCCTTTCACTG
CTGTTCTAAAGTTCGCTGCGGAAGAGTTTCGAGTACCGGCAGCCACCAGT
GCAATCATCACGAATGACGGTGTGGGGATTAATCCGCAACAGAGCGCAGG
CAATGTTTTCTTGAAACATGGCTCCGAGCTTCGACTTATTCCTCGTGATC
GCGTGGGAAGCATATAG
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protein sequence of Gchil2533.t1

>Gchil2533.t1 ID=Gchil2533.t1|Name=Gchil2533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=89bp
MTDSGKVTFKIVLTSDPKLPFKVVNVPEKAPFTAVLKFAAEEFRVPAATS
AIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGSI*
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mRNA from alignment at tig00004400_pilon:1508286..1508733-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2533.t1 ID=Gchil2533.t1|Name=Gchil2533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp|location=Sequence derived from alignment at tig00004400_pilon:1508286..1508733- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGACAGCGGAAAAGTTACGTTCAAAATTGTGCTAACGTCCGACCC
GAAGCTCCCATTCAAGGTGTAGGTTGAAAATAGGTACAAAGAATTCATTT
TGTTCAATTTGACGGTTTATTGCTAACAAAGCGACACATTGTCATACTCG
CCCTTAGAGTTAATGTTCCTGAAAAGGCTCCTTTCACTGCTGTTCTAAAG
TTCGCTGCGGAAGAGTTTCGAGTACCGGCAGCCACCAGTGCAATCATCAC
GAATGACGGTGTGGGGATTAATCCGCAACAGAGCGCAGGTATGTCGTCTA
ATTCCTGTCGTTAGCGATTTCTTGCGCAAAATGGCTCTGACCTTTGTTGC
TCGCTGTGTCACGACGCGTTTTGAATCAAGGCAATGTTTTCTTGAAACAT
GGCTCCGAGCTTCGACTTATTCCTCGTGATCGCGTGGGAAGCATATAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1508286..1508733-

>Gchil2533.t1 ID=Gchil2533.t1|Name=Gchil2533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=267bp|location=Sequence derived from alignment at tig00004400_pilon:1508286..1508733- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGACAGCGGAAAAGTTACGTTCAAAATTGTGCTAACGTCCGACCC
GAAGCTCCCATTCAAGGTAGTTAATGTTCCTGAAAAGGCTCCTTTCACTG
CTGTTCTAAAGTTCGCTGCGGAAGAGTTTCGAGTACCGGCAGCCACCAGT
GCAATCATCACGAATGACGGTGTGGGGATTAATCCGCAACAGAGCGCAGG
CAATGTTTTCTTGAAACATGGCTCCGAGCTTCGACTTATTCCTCGTGATC
GCGTGGGAAGCATATAG
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