Gchil2515.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2515.t1
Unique NameGchil2515.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length103
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1424662..1425057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705559.1
Preferred nameCPN10
PFAMsCpn10
Max annot lvl2759|Eukaryota
KEGG koko:K04078
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0022607,GO:0030150,GO:0031974,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035966,GO:0042026,GO:0042221,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051131,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061077,GO:0065002,GO:0065003,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
Evalue3.5e-38
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota
Descriptionchaperone cofactor-dependent protein refolding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2515Gchil2515Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1424662..1425057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2515.t1Gchil2515.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1424662..1425057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2515.t1.CDS1Gchil2515.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1424662..1424664 +
Gchil2515.t1.CDS2Gchil2515.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1424752..1425057 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2515.t1.exon1Gchil2515.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1424662..1424664 +
Gchil2515.t1.exon2Gchil2515.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1424752..1425057 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2515.t1.start1Gchil2515.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1424662..1424664 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2515.t1.intron1Gchil2515.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1424665..1424751 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2515.t1.stop1Gchil2515.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1425055..1425057 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2515.t1 ID=Gchil2515.t1|Name=Gchil2515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=103bp
MASKIVRRIIPLLDRVLIQKAVAEKTSRGGVILPESAVSKLNEGKVIAVG
PGSRTTDGTLIQPSVKEGDDVLLPEYGGSKVVIDGKDFFLYRDDELLGLI
KH*
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spliced messenger RNA

>Gchil2515.t1 ID=Gchil2515.t1|Name=Gchil2515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp|location=Sequence derived from alignment at tig00004400_pilon:1424662..1425057+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAAAAATTGTCAGGAGAATCATTCCACTGCTCGATCGAGTCTT
GATTCAGAAAGCGGTGGCAGAGAAAACCAGCCGCGGTGGCGTAATCTTGC
CAGAGTCCGCCGTCAGCAAGCTTAATGAAGGGAAGGTGATCGCAGTTGGC
CCTGGGTCCCGAACCACCGACGGAACGCTGATTCAACCGTCCGTAAAGGA
AGGAGATGATGTCCTCTTGCCGGAATATGGGGGGTCAAAGGTCGTCATCG
ACGGTAAAGACTTCTTTTTGTATAGAGACGACGAACTACTAGGACTGATC
AAGCACTAG
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protein sequence of Gchil2515.t1

>Gchil2515.t1 ID=Gchil2515.t1|Name=Gchil2515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=103bp
MASKIVRRIIPLLDRVLIQKAVAEKTSRGGVILPESAVSKLNEGKVIAVG
PGSRTTDGTLIQPSVKEGDDVLLPEYGGSKVVIDGKDFFLYRDDELLGLI
KH*
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mRNA from alignment at tig00004400_pilon:1424662..1425057+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2515.t1 ID=Gchil2515.t1|Name=Gchil2515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004400_pilon:1424662..1425057+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTATGTGATCGACATCATCTTATTCTTTCTAATGATTCCTGTTTTGT
ACATCAATGATCTAACCTTGCCTCTGTACGCTTCTTCCAGGCTTCAAAAA
TTGTCAGGAGAATCATTCCACTGCTCGATCGAGTCTTGATTCAGAAAGCG
GTGGCAGAGAAAACCAGCCGCGGTGGCGTAATCTTGCCAGAGTCCGCCGT
CAGCAAGCTTAATGAAGGGAAGGTGATCGCAGTTGGCCCTGGGTCCCGAA
CCACCGACGGAACGCTGATTCAACCGTCCGTAAAGGAAGGAGATGATGTC
CTCTTGCCGGAATATGGGGGGTCAAAGGTCGTCATCGACGGTAAAGACTT
CTTTTTGTATAGAGACGACGAACTACTAGGACTGATCAAGCACTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1424662..1425057+

>Gchil2515.t1 ID=Gchil2515.t1|Name=Gchil2515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=309bp|location=Sequence derived from alignment at tig00004400_pilon:1424662..1425057+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCAAAAATTGTCAGGAGAATCATTCCACTGCTCGATCGAGTCTT
GATTCAGAAAGCGGTGGCAGAGAAAACCAGCCGCGGTGGCGTAATCTTGC
CAGAGTCCGCCGTCAGCAAGCTTAATGAAGGGAAGGTGATCGCAGTTGGC
CCTGGGTCCCGAACCACCGACGGAACGCTGATTCAACCGTCCGTAAAGGA
AGGAGATGATGTCCTCTTGCCGGAATATGGGGGGTCAAAGGTCGTCATCG
ACGGTAAAGACTTCTTTTTGTATAGAGACGACGAACTACTAGGACTGATC
AAGCACTAG
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