Gchil2513.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2513.t1
Unique NameGchil2513.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1420523..1421593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707112.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
GOsGO:0000064,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006839,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009507,GO:0009536,GO:0015075,GO:0015171,GO:0015179,GO:0015238,GO:0015318,GO:0015711,GO:0015807,GO:0015822,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0098655,GO:0098656,GO:1902475,GO:1903352,GO:1903825,GO:1905039
Evalue2.8e-109
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2513Gchil2513Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1420523..1421593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2513.t1Gchil2513.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1420523..1421593 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2513.t1.start1Gchil2513.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1420523..1420525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2513.t1.CDS1Gchil2513.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1420523..1420630 +
Gchil2513.t1.CDS2Gchil2513.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1420705..1421287 +
Gchil2513.t1.CDS3Gchil2513.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1421367..1421593 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2513.t1.exon1Gchil2513.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1420523..1420630 +
Gchil2513.t1.exon2Gchil2513.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1420705..1421287 +
Gchil2513.t1.exon3Gchil2513.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1421367..1421593 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2513.t1.intron1Gchil2513.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1420631..1420704 +
Gchil2513.t1.intron2Gchil2513.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1421288..1421366 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2513.t1.stop1Gchil2513.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1421591..1421593 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2513.t1 ID=Gchil2513.t1|Name=Gchil2513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=306bp
MAENHDGRLVANSPSPPPWIAVAKELLAGTMGGTAQVCVGHPFDTVKVKL
QSMKQPKPGQPPMYTGAMDVVRKVVAREGVRGLFAGIQAPLPFVAVFNAT
LFAANGTIRRVLGRGRTEDQLSLAEIGLAGVGAGVAVSFVACPTELVKCR
LQAQPGAFAGAIDCTRQVVANRGMSGLFTGMQATLIREMPGNCLYFMTYV
GVQRRLVPEGGSMKDLNSWHHLFAGGMAGLAFWLPCYPMDLCKTLIQTDS
ETNPKYRGFLDCVRKVVRAEGIKGLYKGIGPCLARAFPANAVTLLAYEST
KGLLG*
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spliced messenger RNA

>Gchil2513.t1 ID=Gchil2513.t1|Name=Gchil2513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00004400_pilon:1420523..1421593+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAAACCATGATGGTAGACTTGTGGCAAACTCTCCTTCTCCTCC
TCCCTGGATTGCTGTCGCGAAGGAGCTGCTTGCTGGAACTATGGGCGGAA
CTGCACAGGTATGCGTTGGCCACCCCTTTGATACGGTGAAAGTCAAGCTG
CAAAGTATGAAGCAACCAAAGCCTGGACAGCCGCCCATGTACACTGGTGC
CATGGACGTGGTCAGAAAGGTTGTGGCGCGAGAGGGCGTTCGTGGTTTAT
TTGCTGGTATCCAAGCTCCGCTTCCATTTGTCGCCGTGTTTAACGCTACC
TTGTTTGCAGCAAACGGAACAATAAGACGCGTGCTTGGCAGAGGAAGAAC
GGAGGACCAACTCTCGCTTGCTGAGATCGGTCTGGCGGGCGTTGGAGCCG
GTGTGGCTGTCAGTTTTGTCGCTTGTCCTACTGAGCTTGTCAAGTGCAGA
TTGCAAGCTCAGCCTGGCGCTTTTGCAGGTGCTATTGATTGTACGAGACA
GGTTGTTGCGAATCGCGGCATGAGTGGCTTGTTCACTGGTATGCAGGCTA
CTTTGATTCGTGAGATGCCCGGAAATTGTTTGTACTTTATGACATATGTT
GGAGTGCAACGAAGATTGGTTCCGGAAGGTGGATCTATGAAGGATTTGAA
TTCGTGGCATCACCTCTTCGCCGGTGGTATGGCAGGGCTTGCATTTTGGC
TTCCCTGTTATCCTATGGATCTGTGCAAGACTTTGATTCAGACGGACAGC
GAAACGAATCCAAAGTATAGAGGTTTCCTTGACTGCGTTCGCAAGGTGGT
GAGAGCTGAAGGAATTAAAGGGCTGTACAAGGGTATTGGCCCTTGCCTTG
CACGTGCTTTTCCTGCTAATGCAGTCACTTTGCTTGCATATGAATCAACA
AAGGGATTGCTTGGCTGA
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protein sequence of Gchil2513.t1

>Gchil2513.t1 ID=Gchil2513.t1|Name=Gchil2513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=306bp
MAENHDGRLVANSPSPPPWIAVAKELLAGTMGGTAQVCVGHPFDTVKVKL
QSMKQPKPGQPPMYTGAMDVVRKVVAREGVRGLFAGIQAPLPFVAVFNAT
LFAANGTIRRVLGRGRTEDQLSLAEIGLAGVGAGVAVSFVACPTELVKCR
LQAQPGAFAGAIDCTRQVVANRGMSGLFTGMQATLIREMPGNCLYFMTYV
GVQRRLVPEGGSMKDLNSWHHLFAGGMAGLAFWLPCYPMDLCKTLIQTDS
ETNPKYRGFLDCVRKVVRAEGIKGLYKGIGPCLARAFPANAVTLLAYEST
KGLLG*
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mRNA from alignment at tig00004400_pilon:1420523..1421593+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2513.t1 ID=Gchil2513.t1|Name=Gchil2513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00004400_pilon:1420523..1421593+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGAAAACCATGATGGTAGACTTGTGGCAAACTCTCCTTCTCCTCC
TCCCTGGATTGCTGTCGCGAAGGAGCTGCTTGCTGGAACTATGGGCGGAA
CTGCACAGGTGAGTTCTCCACTCCTGCGATCTACCCCATTCTTTCCATCC
ACGCCTTGTACTCACATTTCCCTTAAACTCAGGTATGCGTTGGCCACCCC
TTTGATACGGTGAAAGTCAAGCTGCAAAGTATGAAGCAACCAAAGCCTGG
ACAGCCGCCCATGTACACTGGTGCCATGGACGTGGTCAGAAAGGTTGTGG
CGCGAGAGGGCGTTCGTGGTTTATTTGCTGGTATCCAAGCTCCGCTTCCA
TTTGTCGCCGTGTTTAACGCTACCTTGTTTGCAGCAAACGGAACAATAAG
ACGCGTGCTTGGCAGAGGAAGAACGGAGGACCAACTCTCGCTTGCTGAGA
TCGGTCTGGCGGGCGTTGGAGCCGGTGTGGCTGTCAGTTTTGTCGCTTGT
CCTACTGAGCTTGTCAAGTGCAGATTGCAAGCTCAGCCTGGCGCTTTTGC
AGGTGCTATTGATTGTACGAGACAGGTTGTTGCGAATCGCGGCATGAGTG
GCTTGTTCACTGGTATGCAGGCTACTTTGATTCGTGAGATGCCCGGAAAT
TGTTTGTACTTTATGACATATGTTGGAGTGCAACGAAGATTGGTTCCGGA
AGGTGGATCTATGAAGGATTTGAATTCGTGGCATCACCTCTTCGCCGGTG
GTATGGCAGGGCTTGGTAAGTTTGTCCATAATTAAGGTCTATCCTGGCGC
ATTGCGAGAAGAAAGATCTAACTTTTTTCTGTTATTGATGTCAGCATTTT
GGCTTCCCTGTTATCCTATGGATCTGTGCAAGACTTTGATTCAGACGGAC
AGCGAAACGAATCCAAAGTATAGAGGTTTCCTTGACTGCGTTCGCAAGGT
GGTGAGAGCTGAAGGAATTAAAGGGCTGTACAAGGGTATTGGCCCTTGCC
TTGCACGTGCTTTTCCTGCTAATGCAGTCACTTTGCTTGCATATGAATCA
ACAAAGGGATTGCTTGGCTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1420523..1421593+

>Gchil2513.t1 ID=Gchil2513.t1|Name=Gchil2513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00004400_pilon:1420523..1421593+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGAAAACCATGATGGTAGACTTGTGGCAAACTCTCCTTCTCCTCC
TCCCTGGATTGCTGTCGCGAAGGAGCTGCTTGCTGGAACTATGGGCGGAA
CTGCACAGGTATGCGTTGGCCACCCCTTTGATACGGTGAAAGTCAAGCTG
CAAAGTATGAAGCAACCAAAGCCTGGACAGCCGCCCATGTACACTGGTGC
CATGGACGTGGTCAGAAAGGTTGTGGCGCGAGAGGGCGTTCGTGGTTTAT
TTGCTGGTATCCAAGCTCCGCTTCCATTTGTCGCCGTGTTTAACGCTACC
TTGTTTGCAGCAAACGGAACAATAAGACGCGTGCTTGGCAGAGGAAGAAC
GGAGGACCAACTCTCGCTTGCTGAGATCGGTCTGGCGGGCGTTGGAGCCG
GTGTGGCTGTCAGTTTTGTCGCTTGTCCTACTGAGCTTGTCAAGTGCAGA
TTGCAAGCTCAGCCTGGCGCTTTTGCAGGTGCTATTGATTGTACGAGACA
GGTTGTTGCGAATCGCGGCATGAGTGGCTTGTTCACTGGTATGCAGGCTA
CTTTGATTCGTGAGATGCCCGGAAATTGTTTGTACTTTATGACATATGTT
GGAGTGCAACGAAGATTGGTTCCGGAAGGTGGATCTATGAAGGATTTGAA
TTCGTGGCATCACCTCTTCGCCGGTGGTATGGCAGGGCTTGCATTTTGGC
TTCCCTGTTATCCTATGGATCTGTGCAAGACTTTGATTCAGACGGACAGC
GAAACGAATCCAAAGTATAGAGGTTTCCTTGACTGCGTTCGCAAGGTGGT
GAGAGCTGAAGGAATTAAAGGGCTGTACAAGGGTATTGGCCCTTGCCTTG
CACGTGCTTTTCCTGCTAATGCAGTCACTTTGCTTGCATATGAATCAACA
AAGGGATTGCTTGGCTGA
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