Gchil2512.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2512.t1
Unique Name	Gchil2512.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	474

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1418548..1419969 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709265.1
Preferred name	kes1
PFAMs	Oxysterol_BP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05012,ko:K20465,ko:K22285
KEGG TC	2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8,2.D.1.1
GOs	GO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005496,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005933,GO:0005935,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0006810,GO:0006869,GO:0006887,GO:0006892,GO:0006897,GO:0006914,GO:0007163,GO:0008142,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009893,GO:0009987,GO:0010562,GO:0010876,GO:0010921,GO:0010922,GO:0012505,GO:0015248,GO:0015850,GO:0015918,GO:0016020,GO:0016043,GO:0016192,GO:0016237,GO:0019220,GO:0019222,GO:0019898,GO:0030011,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031984,GO:0032365,GO:0032934,GO:0032940,GO:0033036,GO:0034727,GO:0035091,GO:0035303,GO:0035306,GO:0035621,GO:0035627,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045937,GO:0046903,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0061024,GO:0061919,GO:0065007,GO:0065009,GO:0070273,GO:0070300,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0120009,GO:0120011,GO:1901564,GO:1901981,GO:1902936
Evalue	8.13e-97
EggNOG OGs	KOG2210@1\|root,KOG2210@2759\|Eukaryota
Description	lipid transport
COG category	P
BRITE	ko00000,ko02000,ko04040,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2512	Gchil2512	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1418548..1419969 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2512.t1.start1	Gchil2512.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1418548..1418550 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2512.t1.CDS1	Gchil2512.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1418548..1419969 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2512.t1.exon1	Gchil2512.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1418548..1419969 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2512.t1.stop1	Gchil2512.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1419967..1419969 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2512.t1	Gchil2512.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1418548..1419969 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1418548..1419969+
coding sequence from alignment at tig00004400_pilon:1418548..1419969+

mRNA sequence

>Gchil2512.t1 ID=Gchil2512.t1|Name=Gchil2512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MSPPLTPPSPTPLAVDCISDEDAYFDARDTLSSSDRSSPRFRPMIPVRYS
RLEPLASPQPPPDTELSLFKIAKEVLTSVKPGADVTNINLPASILDPVST
LEKAKKSMQRGELLQDLCNCDDPETRLLNVMRFNLSGLAKERFGKKPYNP
VLGEVYRCAFVHRANGGETLLVAEQVSHHPPITALHLHNDTLGFQLDSHT
APEPRFWGNSLEVKLRGEIRILLSRFEHEQYVITRPYIYMSGFFAGRQRY
EFNGTSTFKCSKTGLGAEIEFHRAKGHLNVRADMNAVSGRVFKLATDQTL
YTLDGHWDKKVNITCVSSKQQRVLLDYDAVVAEKSMVAIQPPLEDEEPSF
STRVWAECSEAINNGITSEANAQKRKVEDYQRRLKKERIANGVAWDYRYF
VDRDEGEGYEMRPELRKLELVKLLLEPKEIEGLRSGELMKQMHAELMREM
EEDDAKRRGSGRRKLLTRSRNKA*

spliced messenger RNA

>Gchil2512.t1 ID=Gchil2512.t1|Name=Gchil2512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004400_pilon:1418548..1419969+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCCCCTCTCACACCCCCCAGCCCGACGCCTCTCGCCGTCGACTG
CATCTCCGACGAGGACGCCTACTTTGACGCCCGTGATACTCTTTCTTCTT
CTGACCGTTCCTCACCGCGTTTCCGTCCAATGATTCCTGTGCGTTACTCC
CGCCTTGAGCCGCTGGCCTCCCCCCAGCCCCCGCCTGACACAGAGCTGTC
GCTCTTCAAGATAGCAAAGGAGGTGCTCACCAGTGTCAAGCCCGGCGCCG
ACGTTACCAACATCAATCTGCCGGCCAGCATTCTTGACCCCGTTTCCACG
CTGGAGAAAGCGAAAAAGTCCATGCAGCGCGGCGAGCTTCTGCAAGATTT
GTGCAATTGTGATGACCCTGAGACGCGTTTGCTCAATGTCATGCGCTTCA
ACCTATCTGGGCTCGCAAAGGAACGTTTCGGTAAGAAACCGTATAACCCC
GTTTTAGGCGAGGTGTATCGCTGTGCCTTTGTGCACAGGGCGAATGGCGG
CGAAACGCTACTAGTGGCGGAGCAGGTGTCACACCACCCCCCAATAACCG
CCCTTCATCTGCATAATGACACGCTTGGCTTCCAGCTAGACTCGCATACG
GCGCCGGAGCCCAGGTTCTGGGGCAATAGTTTGGAAGTCAAGCTCCGCGG
AGAAATTCGAATCCTGTTGAGTCGTTTCGAACATGAACAGTACGTCATTA
CGCGTCCTTATATCTACATGAGCGGTTTTTTTGCAGGTCGTCAACGATAT
GAGTTTAATGGCACTTCCACTTTCAAGTGTAGTAAAACAGGGCTCGGTGC
CGAAATCGAGTTTCATCGAGCCAAAGGTCACCTTAACGTGCGTGCTGATA
TGAACGCCGTTAGCGGTCGAGTTTTCAAACTTGCAACCGACCAAACTCTG
TACACGCTGGATGGACACTGGGATAAGAAAGTAAATATCACGTGCGTGAG
CAGCAAGCAGCAACGCGTGCTACTTGACTACGATGCAGTGGTAGCGGAAA
AATCTATGGTTGCAATCCAGCCCCCCTTGGAAGATGAAGAGCCGTCGTTC
AGCACACGTGTTTGGGCTGAGTGCTCGGAAGCAATCAATAACGGAATCAC
TTCCGAAGCCAATGCGCAGAAGCGCAAGGTGGAGGACTACCAAAGACGTC
TGAAGAAGGAGCGTATCGCAAACGGGGTGGCTTGGGATTATCGTTATTTT
GTTGACAGGGATGAAGGCGAAGGATACGAGATGCGCCCGGAGTTACGGAA
ACTGGAGCTGGTAAAGCTGTTGCTCGAGCCCAAAGAAATCGAGGGGCTGA
GATCTGGAGAACTGATGAAGCAAATGCACGCCGAACTGATGAGGGAAATG
GAAGAAGATGATGCGAAAAGACGCGGCAGTGGACGAAGAAAGCTATTGAC
AAGAAGCCGGAACAAAGCATGA

protein sequence of Gchil2512.t1

>Gchil2512.t1 ID=Gchil2512.t1|Name=Gchil2512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MSPPLTPPSPTPLAVDCISDEDAYFDARDTLSSSDRSSPRFRPMIPVRYS
RLEPLASPQPPPDTELSLFKIAKEVLTSVKPGADVTNINLPASILDPVST
LEKAKKSMQRGELLQDLCNCDDPETRLLNVMRFNLSGLAKERFGKKPYNP
VLGEVYRCAFVHRANGGETLLVAEQVSHHPPITALHLHNDTLGFQLDSHT
APEPRFWGNSLEVKLRGEIRILLSRFEHEQYVITRPYIYMSGFFAGRQRY
EFNGTSTFKCSKTGLGAEIEFHRAKGHLNVRADMNAVSGRVFKLATDQTL
YTLDGHWDKKVNITCVSSKQQRVLLDYDAVVAEKSMVAIQPPLEDEEPSF
STRVWAECSEAINNGITSEANAQKRKVEDYQRRLKKERIANGVAWDYRYF
VDRDEGEGYEMRPELRKLELVKLLLEPKEIEGLRSGELMKQMHAELMREM
EEDDAKRRGSGRRKLLTRSRNKA*

mRNA from alignment at tig00004400_pilon:1418548..1419969+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2512.t1 ID=Gchil2512.t1|Name=Gchil2512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004400_pilon:1418548..1419969+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCCCCTCTCACACCCCCCAGCCCGACGCCTCTCGCCGTCGACTG
CATCTCCGACGAGGACGCCTACTTTGACGCCCGTGATACTCTTTCTTCTT
CTGACCGTTCCTCACCGCGTTTCCGTCCAATGATTCCTGTGCGTTACTCC
CGCCTTGAGCCGCTGGCCTCCCCCCAGCCCCCGCCTGACACAGAGCTGTC
GCTCTTCAAGATAGCAAAGGAGGTGCTCACCAGTGTCAAGCCCGGCGCCG
ACGTTACCAACATCAATCTGCCGGCCAGCATTCTTGACCCCGTTTCCACG
CTGGAGAAAGCGAAAAAGTCCATGCAGCGCGGCGAGCTTCTGCAAGATTT
GTGCAATTGTGATGACCCTGAGACGCGTTTGCTCAATGTCATGCGCTTCA
ACCTATCTGGGCTCGCAAAGGAACGTTTCGGTAAGAAACCGTATAACCCC
GTTTTAGGCGAGGTGTATCGCTGTGCCTTTGTGCACAGGGCGAATGGCGG
CGAAACGCTACTAGTGGCGGAGCAGGTGTCACACCACCCCCCAATAACCG
CCCTTCATCTGCATAATGACACGCTTGGCTTCCAGCTAGACTCGCATACG
GCGCCGGAGCCCAGGTTCTGGGGCAATAGTTTGGAAGTCAAGCTCCGCGG
AGAAATTCGAATCCTGTTGAGTCGTTTCGAACATGAACAGTACGTCATTA
CGCGTCCTTATATCTACATGAGCGGTTTTTTTGCAGGTCGTCAACGATAT
GAGTTTAATGGCACTTCCACTTTCAAGTGTAGTAAAACAGGGCTCGGTGC
CGAAATCGAGTTTCATCGAGCCAAAGGTCACCTTAACGTGCGTGCTGATA
TGAACGCCGTTAGCGGTCGAGTTTTCAAACTTGCAACCGACCAAACTCTG
TACACGCTGGATGGACACTGGGATAAGAAAGTAAATATCACGTGCGTGAG
CAGCAAGCAGCAACGCGTGCTACTTGACTACGATGCAGTGGTAGCGGAAA
AATCTATGGTTGCAATCCAGCCCCCCTTGGAAGATGAAGAGCCGTCGTTC
AGCACACGTGTTTGGGCTGAGTGCTCGGAAGCAATCAATAACGGAATCAC
TTCCGAAGCCAATGCGCAGAAGCGCAAGGTGGAGGACTACCAAAGACGTC
TGAAGAAGGAGCGTATCGCAAACGGGGTGGCTTGGGATTATCGTTATTTT
GTTGACAGGGATGAAGGCGAAGGATACGAGATGCGCCCGGAGTTACGGAA
ACTGGAGCTGGTAAAGCTGTTGCTCGAGCCCAAAGAAATCGAGGGGCTGA
GATCTGGAGAACTGATGAAGCAAATGCACGCCGAACTGATGAGGGAAATG
GAAGAAGATGATGCGAAAAGACGCGGCAGTGGACGAAGAAAGCTATTGAC
AAGAAGCCGGAACAAAGCATGA

Coding sequence (CDS) from alignment at tig00004400_pilon:1418548..1419969+

>Gchil2512.t1 ID=Gchil2512.t1|Name=Gchil2512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00004400_pilon:1418548..1419969+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCCCCTCTCACACCCCCCAGCCCGACGCCTCTCGCCGTCGACTG
CATCTCCGACGAGGACGCCTACTTTGACGCCCGTGATACTCTTTCTTCTT
CTGACCGTTCCTCACCGCGTTTCCGTCCAATGATTCCTGTGCGTTACTCC
CGCCTTGAGCCGCTGGCCTCCCCCCAGCCCCCGCCTGACACAGAGCTGTC
GCTCTTCAAGATAGCAAAGGAGGTGCTCACCAGTGTCAAGCCCGGCGCCG
ACGTTACCAACATCAATCTGCCGGCCAGCATTCTTGACCCCGTTTCCACG
CTGGAGAAAGCGAAAAAGTCCATGCAGCGCGGCGAGCTTCTGCAAGATTT
GTGCAATTGTGATGACCCTGAGACGCGTTTGCTCAATGTCATGCGCTTCA
ACCTATCTGGGCTCGCAAAGGAACGTTTCGGTAAGAAACCGTATAACCCC
GTTTTAGGCGAGGTGTATCGCTGTGCCTTTGTGCACAGGGCGAATGGCGG
CGAAACGCTACTAGTGGCGGAGCAGGTGTCACACCACCCCCCAATAACCG
CCCTTCATCTGCATAATGACACGCTTGGCTTCCAGCTAGACTCGCATACG
GCGCCGGAGCCCAGGTTCTGGGGCAATAGTTTGGAAGTCAAGCTCCGCGG
AGAAATTCGAATCCTGTTGAGTCGTTTCGAACATGAACAGTACGTCATTA
CGCGTCCTTATATCTACATGAGCGGTTTTTTTGCAGGTCGTCAACGATAT
GAGTTTAATGGCACTTCCACTTTCAAGTGTAGTAAAACAGGGCTCGGTGC
CGAAATCGAGTTTCATCGAGCCAAAGGTCACCTTAACGTGCGTGCTGATA
TGAACGCCGTTAGCGGTCGAGTTTTCAAACTTGCAACCGACCAAACTCTG
TACACGCTGGATGGACACTGGGATAAGAAAGTAAATATCACGTGCGTGAG
CAGCAAGCAGCAACGCGTGCTACTTGACTACGATGCAGTGGTAGCGGAAA
AATCTATGGTTGCAATCCAGCCCCCCTTGGAAGATGAAGAGCCGTCGTTC
AGCACACGTGTTTGGGCTGAGTGCTCGGAAGCAATCAATAACGGAATCAC
TTCCGAAGCCAATGCGCAGAAGCGCAAGGTGGAGGACTACCAAAGACGTC
TGAAGAAGGAGCGTATCGCAAACGGGGTGGCTTGGGATTATCGTTATTTT
GTTGACAGGGATGAAGGCGAAGGATACGAGATGCGCCCGGAGTTACGGAA
ACTGGAGCTGGTAAAGCTGTTGCTCGAGCCCAAAGAAATCGAGGGGCTGA
GATCTGGAGAACTGATGAAGCAAATGCACGCCGAACTGATGAGGGAAATG
GAAGAAGATGATGCGAAAAGACGCGGCAGTGGACGAAGAAAGCTATTGAC
AAGAAGCCGGAACAAAGCATGA