Gchil2505.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2505.t1
Unique NameGchil2505.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1401724..1402605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706292.1
Preferred nameEIF2S2
PFAMseIF-5_eIF-2B
Max annot lvl2759|Eukaryota
KEGG koko:K03238
KEGG Pathwayko03013,map03013
GOsGO:0000003,GO:0000122,GO:0000902,GO:0000904,GO:0001701,GO:0001731,GO:0002176,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005850,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006810,GO:0006928,GO:0006935,GO:0006950,GO:0007275,GO:0007276,GO:0007399,GO:0007409,GO:0007411,GO:0007548,GO:0007568,GO:0008037,GO:0008038,GO:0008135,GO:0008150,GO:0008152,GO:0008283,GO:0008340,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016198,GO:0016199,GO:0016282,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031369,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034976,GO:0036093,GO:0040008,GO:0040011,GO:0040014,GO:0042221,GO:0042330,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045137,GO:0045892,GO:0045934,GO:0046546,GO:0046661,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048638,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051252,GO:0051253,GO:0051704,GO:0051716,GO:0055085,GO:0060255,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097485,GO:0120036,GO:0120039,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue3.27e-57
EggNOG OGsCOG1601@1|root,KOG2768@2759|Eukaryota
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko01009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2505Gchil2505Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1401724..1402605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2505.t1Gchil2505.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1401724..1402605 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2505.t1.start1Gchil2505.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1401724..1401726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2505.t1.CDS1Gchil2505.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1401724..1402203 +
Gchil2505.t1.CDS2Gchil2505.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1402294..1402605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2505.t1.exon1Gchil2505.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1401724..1402203 +
Gchil2505.t1.exon2Gchil2505.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1402294..1402605 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2505.t1.intron1Gchil2505.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1402204..1402293 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2505.t1.stop1Gchil2505.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1402603..1402605 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2505.t1 ID=Gchil2505.t1|Name=Gchil2505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp
MAGEIPDSSSVQLEAEKKTEDAAAVPSFDLSKKKKKKKSKPSTTDTVDAA
NVKDATNGVDSMALQDNNNINLDGHVDEPLDFALPDFTGKKKKKKKKVFF
DDDGDADAGTLNETTEGAQRRDVQPQPWDDTDRDYTYSELINRAFQFLHG
KNPALASGGPSIHRQQEHLLNYIGAELGTTSNIQDGGRLVIKGRFGAEGI
ANVLKKYMLEYVICTSCRSPDTVLMRDANTRLYFVSCESCGAKRSVAPIR
QGFMAQVERRKRR*
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spliced messenger RNA

>Gchil2505.t1 ID=Gchil2505.t1|Name=Gchil2505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00004400_pilon:1401724..1402605+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGAGAAATTCCAGATAGCTCTTCTGTTCAGCTGGAAGCAGAGAA
AAAGACCGAAGATGCCGCCGCAGTCCCTTCCTTTGACTTGTCTaagaaga
agaagaagaagaagTCCAAACCCTCGACTACCGATACTGTCGACGCTGCG
AATGTCAAAGATGCCACAAATGGGGTCGATAGCATGGCTCTACAGGATAA
TAACAATATCAACCTTGATGGACATGTCGACGAGCCGCTTGACTTTGCGC
TGCCTGACTTTACCGGAaagaaaaagaagaagaagaaaaagGTCTTTTTC
GACGACGACGGGGATGCTGACGCAGGGACTCTAAACGAAACTACTGAGGG
TGCGCAGCGCCGAGACGTACAGCCGCAACCTTGGGACGATACTGATCGCG
ATTACACTTACTCGGAACTCATCAACCGTGCTTTCCAGTTTTTGCATGGA
AAGAACCCTGCCTTGGCGAGTGGTGGTCCGAGCATTCATCGTCAGCAAGA
ACATTTGCTCAACTATATTGGTGCTGAGCTTGGTACAACAAGCAACATTC
AGGACGGGGGAAGGCTTGTAATCAAGGGGCGTTTCGGTGCTGAGGGTATT
GCAAACGTACTAAAGAAATACATGCTGGAATACGTGATTTGCACTTCCTG
CCGATCACCTGATACAGTGTTGATGCGAGATGCTAATACTCGGCTTTACT
TCGTTTCTTGTGAAAGCTGCGGTGCGAAGCGTTCTGTGGCACCAATCAGG
CAAGGATTCATGGCTCAAGTGGAGCGACGCAAGAGGAGGTAA
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protein sequence of Gchil2505.t1

>Gchil2505.t1 ID=Gchil2505.t1|Name=Gchil2505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=264bp
MAGEIPDSSSVQLEAEKKTEDAAAVPSFDLSKKKKKKKSKPSTTDTVDAA
NVKDATNGVDSMALQDNNNINLDGHVDEPLDFALPDFTGKKKKKKKKVFF
DDDGDADAGTLNETTEGAQRRDVQPQPWDDTDRDYTYSELINRAFQFLHG
KNPALASGGPSIHRQQEHLLNYIGAELGTTSNIQDGGRLVIKGRFGAEGI
ANVLKKYMLEYVICTSCRSPDTVLMRDANTRLYFVSCESCGAKRSVAPIR
QGFMAQVERRKRR*
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mRNA from alignment at tig00004400_pilon:1401724..1402605+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2505.t1 ID=Gchil2505.t1|Name=Gchil2505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00004400_pilon:1401724..1402605+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGGAGAAATTCCAGATAGCTCTTCTGTTCAGCTGGAAGCAGAGAA
AAAGACCGAAGATGCCGCCGCAGTCCCTTCCTTTGACTTGTCTaagaaga
agaagaagaagaagTCCAAACCCTCGACTACCGATACTGTCGACGCTGCG
AATGTCAAAGATGCCACAAATGGGGTCGATAGCATGGCTCTACAGGATAA
TAACAATATCAACCTTGATGGACATGTCGACGAGCCGCTTGACTTTGCGC
TGCCTGACTTTACCGGAaagaaaaagaagaagaagaaaaagGTCTTTTTC
GACGACGACGGGGATGCTGACGCAGGGACTCTAAACGAAACTACTGAGGG
TGCGCAGCGCCGAGACGTACAGCCGCAACCTTGGGACGATACTGATCGCG
ATTACACTTACTCGGAACTCATCAACCGTGCTTTCCAGTTTTTGCATGGA
AAGAACCCTGCCTTGGCGAGTGGTGGTCCGGTAAGAAAAAAGATCTCCTT
ACAGCTTCCGCAAGTTGCAAGAGAAGGAACTAAAAAGACTGTGTTTCTTA
ACTTTGGTTCAATCTGCAAGAGCATTCATCGTCAGCAAGAACATTTGCTC
AACTATATTGGTGCTGAGCTTGGTACAACAAGCAACATTCAGGACGGGGG
AAGGCTTGTAATCAAGGGGCGTTTCGGTGCTGAGGGTATTGCAAACGTAC
TAAAGAAATACATGCTGGAATACGTGATTTGCACTTCCTGCCGATCACCT
GATACAGTGTTGATGCGAGATGCTAATACTCGGCTTTACTTCGTTTCTTG
TGAAAGCTGCGGTGCGAAGCGTTCTGTGGCACCAATCAGGCAAGGATTCA
TGGCTCAAGTGGAGCGACGCAAGAGGAGGTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1401724..1402605+

>Gchil2505.t1 ID=Gchil2505.t1|Name=Gchil2505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00004400_pilon:1401724..1402605+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGGAGAAATTCCAGATAGCTCTTCTGTTCAGCTGGAAGCAGAGAA
AAAGACCGAAGATGCCGCCGCAGTCCCTTCCTTTGACTTGTCTaagaaga
agaagaagaagaagTCCAAACCCTCGACTACCGATACTGTCGACGCTGCG
AATGTCAAAGATGCCACAAATGGGGTCGATAGCATGGCTCTACAGGATAA
TAACAATATCAACCTTGATGGACATGTCGACGAGCCGCTTGACTTTGCGC
TGCCTGACTTTACCGGAaagaaaaagaagaagaagaaaaagGTCTTTTTC
GACGACGACGGGGATGCTGACGCAGGGACTCTAAACGAAACTACTGAGGG
TGCGCAGCGCCGAGACGTACAGCCGCAACCTTGGGACGATACTGATCGCG
ATTACACTTACTCGGAACTCATCAACCGTGCTTTCCAGTTTTTGCATGGA
AAGAACCCTGCCTTGGCGAGTGGTGGTCCGAGCATTCATCGTCAGCAAGA
ACATTTGCTCAACTATATTGGTGCTGAGCTTGGTACAACAAGCAACATTC
AGGACGGGGGAAGGCTTGTAATCAAGGGGCGTTTCGGTGCTGAGGGTATT
GCAAACGTACTAAAGAAATACATGCTGGAATACGTGATTTGCACTTCCTG
CCGATCACCTGATACAGTGTTGATGCGAGATGCTAATACTCGGCTTTACT
TCGTTTCTTGTGAAAGCTGCGGTGCGAAGCGTTCTGTGGCACCAATCAGG
CAAGGATTCATGGCTCAAGTGGAGCGACGCAAGAGGAGGTAA
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