Gchil2502.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2502.t1
Unique NameGchil2502.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1395369..1396382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009762500.1
PFAMsGlycos_trans_3N,Glycos_transf_3
Max annot lvl35493|Streptophyta
KEGG rclassRC00440
KEGG koko:K00766
KEGG ReactionR01073
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0031967,GO:0031975,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue2.94e-91
EggNOG OGsCOG0547@1|root,KOG1438@2759|Eukaryota,37KW6@33090|Viridiplantae,3GDTU@35493|Streptophyta,44GAU@71274|asterids
EC2.4.2.18
DescriptionAnthranilate phosphoribosyltransferase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2502Gchil2502Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1395369..1396382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2502.t1.stop1Gchil2502.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1395369..1395371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2502.t1.CDS1Gchil2502.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1395369..1396382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2502.t1.exon1Gchil2502.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1395369..1396382 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2502.t1.start1Gchil2502.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1396380..1396382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2502.t1Gchil2502.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1395369..1396382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2502.t1 ID=Gchil2502.t1|Name=Gchil2502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=338bp
MKPYLEKLVSLQNLTSTEATDAMSYILSGEASDSEIAAYLSVLAAKGETS
DEVFGSVKAMRKEMVPVTSSYPVLDIVGTGGDGFDTVNISTAASILAAAA
GCRVAKHGNRSVSSKSGSADVLEALGINIQLSPEGVSQCIDQVGIGFMFA
RVHHPKMRLVGRVRQALKIRTLFNIVGPLLNPCGAEYAVIGVARPSLLDT
MADVLISSGVKHGVVVHTAGLDEYSNTGVSNVVEFVNGVKEKKTFDPEAE
LGMPRVQVSALKGGDANENASIIRDVLSGGLKGPITDAIVLNAAVGCYVY
GLDSNIREAVDRIHQVLVSGKATALLEKWGAVSRSAK*
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spliced messenger RNA

>Gchil2502.t1 ID=Gchil2502.t1|Name=Gchil2502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004400_pilon:1395369..1396382- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCATACCTGGAGAAGCTGGTTTCGCTGCAAAATCTCACATCCAC
CGAGGCCACAGATGCGATGAGCTACATTCTGAGTGGCGAGGCTTCGGACT
CTGAAATCGCTGCATATCTTTCCGTCCTTGCTGCTAAAGGTGAAACCTCT
GATGAGGTCTTCGGCTCAGTGAAAGCCATGAGGAAGGAAATGGTGCCCGT
TACTTCTTCATATCCAGTTTTAGATATCGTTGGTACTGGAGGCGATGGCT
TCGATACAGTCAACATTTCTACCGCTGCATCAATACTAGCAGCCGCGGCG
GGGTGCAGAGTTGCCAAACATGGAAACCGCTCTGTCAGCTCCAAAAGCGG
AAGCGCAGATGTGCTCGAGGCGTTGGGGATCAACATTCAACTTTCTCCAG
AAGGAGTTTCCCAGTGTATAGATCAAGTTGGAATTGGGTTCATGTTCGCA
CGTGTCCATCACCCGAAAATGCGCTTAGTTGGCCGTGTTCGTCAGGCTTT
GAAGATTCGAACTTTATTTAACATCGTGGGACCACTCCTCAATCCTTGCG
GAGCAGAGTACGCGGTGATTGGCGTCGCCAGACCTTCCTTACTTGATACT
ATGGCTGATGTTCTCATCTCATCGGGTGTCAAACATGGTGTCGTTGTTCA
CACTGCGGGACTTGATGAGTATAGTAACACAGGTGTATCAAATGTCGTTG
AATTTGTCAACGGCGTCAAGGAAAAGAAGACATTCGATCCTGAAGCAGAG
TTAGGAATGCCTCGAGTGCAAGTTTCTGCACTCAAGGGAGGTGATGCCAA
TGAAAACGCCTCCATCATTCGCGACGTGTTGTCTGGGGGGTTGAAGGGGC
CTATCACGGACGCTATAGTCCTTAATGCAGCTGTCGGTTGCTACGTCTAC
GGACTCGATTCAAATATTCGCGAGGCTGTGGATCGCATCCATCAAGTTCT
AGTTTCAGGAAAAGCAACTGCTTTGCTTGAAAAGTGGGGAGCTGTTTCGC
GGTCGGCGAAATGA
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protein sequence of Gchil2502.t1

>Gchil2502.t1 ID=Gchil2502.t1|Name=Gchil2502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=338bp
MKPYLEKLVSLQNLTSTEATDAMSYILSGEASDSEIAAYLSVLAAKGETS
DEVFGSVKAMRKEMVPVTSSYPVLDIVGTGGDGFDTVNISTAASILAAAA
GCRVAKHGNRSVSSKSGSADVLEALGINIQLSPEGVSQCIDQVGIGFMFA
RVHHPKMRLVGRVRQALKIRTLFNIVGPLLNPCGAEYAVIGVARPSLLDT
MADVLISSGVKHGVVVHTAGLDEYSNTGVSNVVEFVNGVKEKKTFDPEAE
LGMPRVQVSALKGGDANENASIIRDVLSGGLKGPITDAIVLNAAVGCYVY
GLDSNIREAVDRIHQVLVSGKATALLEKWGAVSRSAK*
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mRNA from alignment at tig00004400_pilon:1395369..1396382-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2502.t1 ID=Gchil2502.t1|Name=Gchil2502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004400_pilon:1395369..1396382- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCATACCTGGAGAAGCTGGTTTCGCTGCAAAATCTCACATCCAC
CGAGGCCACAGATGCGATGAGCTACATTCTGAGTGGCGAGGCTTCGGACT
CTGAAATCGCTGCATATCTTTCCGTCCTTGCTGCTAAAGGTGAAACCTCT
GATGAGGTCTTCGGCTCAGTGAAAGCCATGAGGAAGGAAATGGTGCCCGT
TACTTCTTCATATCCAGTTTTAGATATCGTTGGTACTGGAGGCGATGGCT
TCGATACAGTCAACATTTCTACCGCTGCATCAATACTAGCAGCCGCGGCG
GGGTGCAGAGTTGCCAAACATGGAAACCGCTCTGTCAGCTCCAAAAGCGG
AAGCGCAGATGTGCTCGAGGCGTTGGGGATCAACATTCAACTTTCTCCAG
AAGGAGTTTCCCAGTGTATAGATCAAGTTGGAATTGGGTTCATGTTCGCA
CGTGTCCATCACCCGAAAATGCGCTTAGTTGGCCGTGTTCGTCAGGCTTT
GAAGATTCGAACTTTATTTAACATCGTGGGACCACTCCTCAATCCTTGCG
GAGCAGAGTACGCGGTGATTGGCGTCGCCAGACCTTCCTTACTTGATACT
ATGGCTGATGTTCTCATCTCATCGGGTGTCAAACATGGTGTCGTTGTTCA
CACTGCGGGACTTGATGAGTATAGTAACACAGGTGTATCAAATGTCGTTG
AATTTGTCAACGGCGTCAAGGAAAAGAAGACATTCGATCCTGAAGCAGAG
TTAGGAATGCCTCGAGTGCAAGTTTCTGCACTCAAGGGAGGTGATGCCAA
TGAAAACGCCTCCATCATTCGCGACGTGTTGTCTGGGGGGTTGAAGGGGC
CTATCACGGACGCTATAGTCCTTAATGCAGCTGTCGGTTGCTACGTCTAC
GGACTCGATTCAAATATTCGCGAGGCTGTGGATCGCATCCATCAAGTTCT
AGTTTCAGGAAAAGCAACTGCTTTGCTTGAAAAGTGGGGAGCTGTTTCGC
GGTCGGCGAAATGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1395369..1396382-

>Gchil2502.t1 ID=Gchil2502.t1|Name=Gchil2502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00004400_pilon:1395369..1396382- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCATACCTGGAGAAGCTGGTTTCGCTGCAAAATCTCACATCCAC
CGAGGCCACAGATGCGATGAGCTACATTCTGAGTGGCGAGGCTTCGGACT
CTGAAATCGCTGCATATCTTTCCGTCCTTGCTGCTAAAGGTGAAACCTCT
GATGAGGTCTTCGGCTCAGTGAAAGCCATGAGGAAGGAAATGGTGCCCGT
TACTTCTTCATATCCAGTTTTAGATATCGTTGGTACTGGAGGCGATGGCT
TCGATACAGTCAACATTTCTACCGCTGCATCAATACTAGCAGCCGCGGCG
GGGTGCAGAGTTGCCAAACATGGAAACCGCTCTGTCAGCTCCAAAAGCGG
AAGCGCAGATGTGCTCGAGGCGTTGGGGATCAACATTCAACTTTCTCCAG
AAGGAGTTTCCCAGTGTATAGATCAAGTTGGAATTGGGTTCATGTTCGCA
CGTGTCCATCACCCGAAAATGCGCTTAGTTGGCCGTGTTCGTCAGGCTTT
GAAGATTCGAACTTTATTTAACATCGTGGGACCACTCCTCAATCCTTGCG
GAGCAGAGTACGCGGTGATTGGCGTCGCCAGACCTTCCTTACTTGATACT
ATGGCTGATGTTCTCATCTCATCGGGTGTCAAACATGGTGTCGTTGTTCA
CACTGCGGGACTTGATGAGTATAGTAACACAGGTGTATCAAATGTCGTTG
AATTTGTCAACGGCGTCAAGGAAAAGAAGACATTCGATCCTGAAGCAGAG
TTAGGAATGCCTCGAGTGCAAGTTTCTGCACTCAAGGGAGGTGATGCCAA
TGAAAACGCCTCCATCATTCGCGACGTGTTGTCTGGGGGGTTGAAGGGGC
CTATCACGGACGCTATAGTCCTTAATGCAGCTGTCGGTTGCTACGTCTAC
GGACTCGATTCAAATATTCGCGAGGCTGTGGATCGCATCCATCAAGTTCT
AGTTTCAGGAAAAGCAACTGCTTTGCTTGAAAAGTGGGGAGCTGTTTCGC
GGTCGGCGAAATGA
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