Gchil2500.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2500.t1
Unique NameGchil2500.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1392360..1393364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10025604
PFAMsBPL_C,BPL_LplA_LipB
Max annot lvl35493|Streptophyta
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K01942
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,map00780,map01100
GOsGO:0000785,GO:0001101,GO:0003674,GO:0003824,GO:0004077,GO:0004078,GO:0004080,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005694,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006807,GO:0006996,GO:0007584,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009305,GO:0009374,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0014070,GO:0016043,GO:0016363,GO:0016569,GO:0016570,GO:0016874,GO:0016879,GO:0018271,GO:0019538,GO:0019842,GO:0019899,GO:0031406,GO:0031667,GO:0031974,GO:0031981,GO:0033218,GO:0033273,GO:0033293,GO:0034399,GO:0036094,GO:0036211,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042966,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048037,GO:0050662,GO:0050896,GO:0051276,GO:0070013,GO:0070781,GO:0071110,GO:0071704,GO:0071840,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901576,GO:1901681,GO:1901698,GO:1901700
Evalue1.1e-37
EggNOG OGsCOG0340@1|root,KOG1536@2759|Eukaryota,37PT9@33090|Viridiplantae,3GCAK@35493|Streptophyta,4JM2N@91835|fabids
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
DescriptionBiotin--protein ligase
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2500Gchil2500Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1392360..1393364 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2500.t1.stop1Gchil2500.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1392360..1392362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2500.t1.CDS1Gchil2500.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1392360..1393364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2500.t1.exon1Gchil2500.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1392360..1393364 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2500.t1.start1Gchil2500.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1393362..1393364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2500.t1Gchil2500.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1392360..1393364 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2500.t1 ID=Gchil2500.t1|Name=Gchil2500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=335bp
MDKPEQLRIHCTTNQAHERLMQFRANDLLQLTLTHSVKLFSPAETSEHYA
SQSVQEGFKCTVGQRSQQKLLNMAIVQNNMKTDWCGHVLVSLPQTESTQN
VLMRLMPWCETGCVAVTGLQTNGRGRRGAVWESPIGSVAISVKVVVPSTN
FTTLTFLQYIAALAVVKAAKRKWNMTLRIKWPNDVYRNGNKLGGVLCEGA
LRNNHFEVVVGVGVNVTNRHPTTCLLDHEMIHGREIFVAFFLAEFEQLYN
VYRQHGFDGELKNMYLEAWMHSQQPLMIGGPNGARAIVYGLAPNGWVRVL
REDLDTFEDLPPELTSLDLKNAILKEKEVGPRYP*
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spliced messenger RNA

>Gchil2500.t1 ID=Gchil2500.t1|Name=Gchil2500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00004400_pilon:1392360..1393364- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGCCCGAGCAGCTCAGGATCCACTGCACTACCAATCAAGCACA
TGAGCGTTTGATGCAATTCCGTGCAAACGATCTACTCCAGCTCACATTGA
CGCATAGCGTCAAACTGTTCAGCCCCGCGGAAACTTCGGAGCATTATGCT
TCACAATCAGTCCAAGAAGGTTTCAAGTGCACAGTTGGGCAGCGATCGCA
ACAAAAGCTATTGAATATGGCCATAGTTCAAAACAATATGAAAACGGACT
GGTGTGGCCATGTTTTGGTTTCTCTCCCTCAAACTGAAAGCACACAGAAT
GTACTTATGCGTTTAATGCCATGGTGCGAAACGGGTTGTGTTGCAGTCAC
CGGTTTACAGACAAATGGGCGAGGACGCCGTGGGGCTGTATGGGAATCCC
CAATCGGCAGTGTCGCAATCTCTGTTAAGGTGGTCGTTCCAAGTACAAAT
TTCACAACACTAACATTCTTGCAATACATTGCAGCTTTAGCTGTTGTAAA
AGCTGCAAAACGGAAATGGAACATGACTTTGCGTATCAAGTGGCCGAACG
ACGTATACAGAAATGGTAATAAGCTTGGCGGGGTGCTTTGCGAAGGTGCG
CTTCGTAACAACCACTTTGAGGTGGTCGTTGGTGTTGGAGTCAATGTCAC
AAACCGTCATCCAACGACATGTTTGCTCGATCACGAGATGATACATGGGA
GAGAGATCTTTGTTGCTTTCTTTCTCGCGGAATTCGAACAACTTTACAAT
GTGTATCGCCAACATGGATTTGATGGTGAGCTAAAGAACATGTATCTCGA
AGCATGGATGCACAGTCAACAGCCACTCATGATTGGTGGGCCTAATGGAG
CACGGGCTATTGTGTACGGTTTAGCTCCCAACGGGTGGGTTCGGGTGCTG
AGAGAAGACTTGGATACGTTTGAGGACCTGCCACCCGAACTCACAAGCCT
CGACCTGAAAAATGCCATCCTGAAAGAAAAAGAGGTCGGTCCCAGATACC
CATAG
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protein sequence of Gchil2500.t1

>Gchil2500.t1 ID=Gchil2500.t1|Name=Gchil2500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=335bp
MDKPEQLRIHCTTNQAHERLMQFRANDLLQLTLTHSVKLFSPAETSEHYA
SQSVQEGFKCTVGQRSQQKLLNMAIVQNNMKTDWCGHVLVSLPQTESTQN
VLMRLMPWCETGCVAVTGLQTNGRGRRGAVWESPIGSVAISVKVVVPSTN
FTTLTFLQYIAALAVVKAAKRKWNMTLRIKWPNDVYRNGNKLGGVLCEGA
LRNNHFEVVVGVGVNVTNRHPTTCLLDHEMIHGREIFVAFFLAEFEQLYN
VYRQHGFDGELKNMYLEAWMHSQQPLMIGGPNGARAIVYGLAPNGWVRVL
REDLDTFEDLPPELTSLDLKNAILKEKEVGPRYP*
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mRNA from alignment at tig00004400_pilon:1392360..1393364-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2500.t1 ID=Gchil2500.t1|Name=Gchil2500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00004400_pilon:1392360..1393364- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGCCCGAGCAGCTCAGGATCCACTGCACTACCAATCAAGCACA
TGAGCGTTTGATGCAATTCCGTGCAAACGATCTACTCCAGCTCACATTGA
CGCATAGCGTCAAACTGTTCAGCCCCGCGGAAACTTCGGAGCATTATGCT
TCACAATCAGTCCAAGAAGGTTTCAAGTGCACAGTTGGGCAGCGATCGCA
ACAAAAGCTATTGAATATGGCCATAGTTCAAAACAATATGAAAACGGACT
GGTGTGGCCATGTTTTGGTTTCTCTCCCTCAAACTGAAAGCACACAGAAT
GTACTTATGCGTTTAATGCCATGGTGCGAAACGGGTTGTGTTGCAGTCAC
CGGTTTACAGACAAATGGGCGAGGACGCCGTGGGGCTGTATGGGAATCCC
CAATCGGCAGTGTCGCAATCTCTGTTAAGGTGGTCGTTCCAAGTACAAAT
TTCACAACACTAACATTCTTGCAATACATTGCAGCTTTAGCTGTTGTAAA
AGCTGCAAAACGGAAATGGAACATGACTTTGCGTATCAAGTGGCCGAACG
ACGTATACAGAAATGGTAATAAGCTTGGCGGGGTGCTTTGCGAAGGTGCG
CTTCGTAACAACCACTTTGAGGTGGTCGTTGGTGTTGGAGTCAATGTCAC
AAACCGTCATCCAACGACATGTTTGCTCGATCACGAGATGATACATGGGA
GAGAGATCTTTGTTGCTTTCTTTCTCGCGGAATTCGAACAACTTTACAAT
GTGTATCGCCAACATGGATTTGATGGTGAGCTAAAGAACATGTATCTCGA
AGCATGGATGCACAGTCAACAGCCACTCATGATTGGTGGGCCTAATGGAG
CACGGGCTATTGTGTACGGTTTAGCTCCCAACGGGTGGGTTCGGGTGCTG
AGAGAAGACTTGGATACGTTTGAGGACCTGCCACCCGAACTCACAAGCCT
CGACCTGAAAAATGCCATCCTGAAAGAAAAAGAGGTCGGTCCCAGATACC
CATAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1392360..1393364-

>Gchil2500.t1 ID=Gchil2500.t1|Name=Gchil2500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00004400_pilon:1392360..1393364- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGCCCGAGCAGCTCAGGATCCACTGCACTACCAATCAAGCACA
TGAGCGTTTGATGCAATTCCGTGCAAACGATCTACTCCAGCTCACATTGA
CGCATAGCGTCAAACTGTTCAGCCCCGCGGAAACTTCGGAGCATTATGCT
TCACAATCAGTCCAAGAAGGTTTCAAGTGCACAGTTGGGCAGCGATCGCA
ACAAAAGCTATTGAATATGGCCATAGTTCAAAACAATATGAAAACGGACT
GGTGTGGCCATGTTTTGGTTTCTCTCCCTCAAACTGAAAGCACACAGAAT
GTACTTATGCGTTTAATGCCATGGTGCGAAACGGGTTGTGTTGCAGTCAC
CGGTTTACAGACAAATGGGCGAGGACGCCGTGGGGCTGTATGGGAATCCC
CAATCGGCAGTGTCGCAATCTCTGTTAAGGTGGTCGTTCCAAGTACAAAT
TTCACAACACTAACATTCTTGCAATACATTGCAGCTTTAGCTGTTGTAAA
AGCTGCAAAACGGAAATGGAACATGACTTTGCGTATCAAGTGGCCGAACG
ACGTATACAGAAATGGTAATAAGCTTGGCGGGGTGCTTTGCGAAGGTGCG
CTTCGTAACAACCACTTTGAGGTGGTCGTTGGTGTTGGAGTCAATGTCAC
AAACCGTCATCCAACGACATGTTTGCTCGATCACGAGATGATACATGGGA
GAGAGATCTTTGTTGCTTTCTTTCTCGCGGAATTCGAACAACTTTACAAT
GTGTATCGCCAACATGGATTTGATGGTGAGCTAAAGAACATGTATCTCGA
AGCATGGATGCACAGTCAACAGCCACTCATGATTGGTGGGCCTAATGGAG
CACGGGCTATTGTGTACGGTTTAGCTCCCAACGGGTGGGTTCGGGTGCTG
AGAGAAGACTTGGATACGTTTGAGGACCTGCCACCCGAACTCACAAGCCT
CGACCTGAAAAATGCCATCCTGAAAGAAAAAGAGGTCGGTCCCAGATACC
CATAG
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