Gchil2498.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2498.t1
Unique NameGchil2498.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length570
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1385763..1387472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215358.XP_010748688.1
Preferred namePOLR3C
PFAMsHTH_9,RNA_pol_Rpc82
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K03023
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006359,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue3.53e-13
EggNOG OGsKOG2587@1|root,KOG2587@2759|Eukaryota,38F2V@33154|Opisthokonta,3BF6E@33208|Metazoa,3D0CE@33213|Bilateria,47Z7K@7711|Chordata,4975U@7742|Vertebrata,4A1QP@7898|Actinopterygii
DescriptionPolymerase (RNA) III (DNA directed) polypeptide C
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2498Gchil2498Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1385763..1387472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2498.t1.stop1Gchil2498.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1385763..1385765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2498.t1.CDS1Gchil2498.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1385763..1387472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2498.t1.exon1Gchil2498.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1385763..1387472 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2498.t1.start1Gchil2498.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1387470..1387472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2498.t1Gchil2498.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1385763..1387472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2498.t1 ID=Gchil2498.t1|Name=Gchil2498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp
MVRQHEALACAIARFHFRPIVAETVRLLCLHPGSTLPALSRLLSPFFETL
SARNHKLQRVVGDEQRRGFARDSLAVLCQHGIVYYVERVLPGAAKSAAVN
GARSSPSQPRTVIQYYCDVNVLLYRPRLPLYLGWALRRFGEFGYAVLSAL
LERGRLTSAQLFKCTLTPKMAEFPLSQADIQACLIDMVQSGVVHWCGKRK
RRSSLVARIHKQNEQAAVDAVGSKRPNPDAMHYDYEDDDDDDDYDDEQDD
RQRIQIGRGDHIRSVIVPDKDNDIDIWGVCFCHLNREFRNECCIMVVATR
VPNELSIHILRVGLQIALSREDCQQPSEDAVTAEVPTDDIKKGLEEFDLF
VSTQEFWDAALLLAKQDPPFVMAVPAHAPTHLKFVPGRLVSDTRHKTVEE
LIFRRYGGTGRRIFKALALEGAMEEKMLAEKCMLPLKVVRENLFRMYQDR
VVSTQEVPRSNDQQRAGNWFYLWKVNTFSLHRSLLEVMYKTLLNLFAQYE
TLDNDTKNPQEQKKMKNRETLLVSSILRVDQSIMVMRDFGPITAAYFPSK
YEILDGYILQSKKRRRRVA*
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spliced messenger RNA

>Gchil2498.t1 ID=Gchil2498.t1|Name=Gchil2498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00004400_pilon:1385763..1387472- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCGACAGCATGAGGCGCTCGCGTGCGCCATAGCGCGCTTCCATTT
CAGGCCCATTGTCGCCGAGACGGTGCGTCTGTTGTGCCTGCACCCGGGCT
CCACGCTGCCCGCGCTGTCGCGGCTGTTGTCGCCCTTCTTCGAGACGCTT
TCGGCGCGCAATCATAAGCTGCAGCGCGTTGTGGGTGACGAGCAGCGCCG
CGGCTTTGCGCGTGATTCTCTGGCTGTGCTGTGTCAGCATGGCATTGTGT
ACTACGTTGAACGGGTGCTGCCCGGCGCTGCTAAGAGTGCCGCGGTGAAC
GGCGCCCGCTCGTCGCCCTCGCAGCCGCGCACCGTCATTCAGTACTACTG
CGATGTCAACGTGCTGCTGTATAGACCTCGTCTGCCTCTGTATCTCGGCT
GGGCGCTGCGGCGCTTTGGCGAGTTTGGTTACGCCGTGCTGTCCGCTTTG
CTCGAGAGAGGGCGTCTCACCTCAGCACAGCTCTTCAAGTGTACCTTGAC
GCCCAAGATGGCTGAGTTTCCTTTATCTCAAGCCGATATACAGGCCTGTC
TCATTGACATGGTGCAGTCCGGCGTCGTGCATTGGTGCGGAAAGCGCAAA
CGCCGCTCCTCCTTAGTGGCCAGAATCCACAAGCAAAACGAACAAGCTGC
CGTTGACGCTGTCGGTTCTAAGCGACCCAACCCGGATGCCATGCATTACG
ATTACGAAGACGATGACGATGACGATGACTATGACGATGAACAAGATGAT
CGCCAACGCATTCAGATTGGGAGGGGTGATCATATACGTTCTGTCATTGT
TCCAGACAAGGATAACGACATCGATATCTGGGGCGTCTGCTTCTGCCATC
TCAATCGCGAATTCCGAAACGAGTGCTGCATCATGGTCGTAGCAACTCGC
GTTCCAAATGAACTTTCAATTCACATCCTGCGCGTCGGCTTGCAAATCGC
CTTGTCTAGAGAGGACTGTCAACAGCCCTCCGAAGATGCAGTCACTGCTG
AAGTCCCCACTGATGATATCAAGAAGGGACTGGAAGAGTTTGACCTATTC
GTAAGCACACAAGAGTTTTGGGATGCAGCGCTGCTCCTCGCCAAACAAGA
CCCCCCGTTCGTTATGGCGGTGCCCGCCCACGCGCCTACCCATCTGAAGT
TTGTACCTGGAAGACTGGTTTCCGATACACGTCACAAGACCGTAGAAGAG
CTCATCTTCAGGCGGTATGGTGGCACTGGAAGACGCATATTTAAAGCGTT
AGCGTTGGAAGGCGCTATGGAGGAGAAGATGCTCGCTGAGAAATGTATGC
TACCGCTCAAAGTGGTAAGAGAGAATTTGTTTCGTATGTACCAGGATCGT
GTTGTCTCTACTCAGGAAGTCCCTCGTTCGAATGATCAGCAGCGAGCCGG
CAACTGGTTTTATTTGTGGAAGGTGAACACCTTCTCTTTACATCGCAGCT
TGCTCGAGGTGATGTACAAGACATTACTCAACTTGTTTGCACAATATGAG
ACGTTAGACAACGATACAAAAAACCCGCAAGAGCAGAAGAAGATGAAGAA
CCGTGAAACTCTTCTCGTTTCCAGTATTCTCAGAGTCGACCAGTCTATCA
TGGTTATGCGAGATTTTGGTCCCATTACTGCTGCATATTTTCCGTCAAAG
TATGAAATACTTGATGGATATATATTACAAAGTAAAAAGCGACGGCGAAG
AGTTGCGTGA
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protein sequence of Gchil2498.t1

>Gchil2498.t1 ID=Gchil2498.t1|Name=Gchil2498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=570bp
MVRQHEALACAIARFHFRPIVAETVRLLCLHPGSTLPALSRLLSPFFETL
SARNHKLQRVVGDEQRRGFARDSLAVLCQHGIVYYVERVLPGAAKSAAVN
GARSSPSQPRTVIQYYCDVNVLLYRPRLPLYLGWALRRFGEFGYAVLSAL
LERGRLTSAQLFKCTLTPKMAEFPLSQADIQACLIDMVQSGVVHWCGKRK
RRSSLVARIHKQNEQAAVDAVGSKRPNPDAMHYDYEDDDDDDDYDDEQDD
RQRIQIGRGDHIRSVIVPDKDNDIDIWGVCFCHLNREFRNECCIMVVATR
VPNELSIHILRVGLQIALSREDCQQPSEDAVTAEVPTDDIKKGLEEFDLF
VSTQEFWDAALLLAKQDPPFVMAVPAHAPTHLKFVPGRLVSDTRHKTVEE
LIFRRYGGTGRRIFKALALEGAMEEKMLAEKCMLPLKVVRENLFRMYQDR
VVSTQEVPRSNDQQRAGNWFYLWKVNTFSLHRSLLEVMYKTLLNLFAQYE
TLDNDTKNPQEQKKMKNRETLLVSSILRVDQSIMVMRDFGPITAAYFPSK
YEILDGYILQSKKRRRRVA*
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mRNA from alignment at tig00004400_pilon:1385763..1387472-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2498.t1 ID=Gchil2498.t1|Name=Gchil2498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00004400_pilon:1385763..1387472- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCCGACAGCATGAGGCGCTCGCGTGCGCCATAGCGCGCTTCCATTT
CAGGCCCATTGTCGCCGAGACGGTGCGTCTGTTGTGCCTGCACCCGGGCT
CCACGCTGCCCGCGCTGTCGCGGCTGTTGTCGCCCTTCTTCGAGACGCTT
TCGGCGCGCAATCATAAGCTGCAGCGCGTTGTGGGTGACGAGCAGCGCCG
CGGCTTTGCGCGTGATTCTCTGGCTGTGCTGTGTCAGCATGGCATTGTGT
ACTACGTTGAACGGGTGCTGCCCGGCGCTGCTAAGAGTGCCGCGGTGAAC
GGCGCCCGCTCGTCGCCCTCGCAGCCGCGCACCGTCATTCAGTACTACTG
CGATGTCAACGTGCTGCTGTATAGACCTCGTCTGCCTCTGTATCTCGGCT
GGGCGCTGCGGCGCTTTGGCGAGTTTGGTTACGCCGTGCTGTCCGCTTTG
CTCGAGAGAGGGCGTCTCACCTCAGCACAGCTCTTCAAGTGTACCTTGAC
GCCCAAGATGGCTGAGTTTCCTTTATCTCAAGCCGATATACAGGCCTGTC
TCATTGACATGGTGCAGTCCGGCGTCGTGCATTGGTGCGGAAAGCGCAAA
CGCCGCTCCTCCTTAGTGGCCAGAATCCACAAGCAAAACGAACAAGCTGC
CGTTGACGCTGTCGGTTCTAAGCGACCCAACCCGGATGCCATGCATTACG
ATTACGAAGACGATGACGATGACGATGACTATGACGATGAACAAGATGAT
CGCCAACGCATTCAGATTGGGAGGGGTGATCATATACGTTCTGTCATTGT
TCCAGACAAGGATAACGACATCGATATCTGGGGCGTCTGCTTCTGCCATC
TCAATCGCGAATTCCGAAACGAGTGCTGCATCATGGTCGTAGCAACTCGC
GTTCCAAATGAACTTTCAATTCACATCCTGCGCGTCGGCTTGCAAATCGC
CTTGTCTAGAGAGGACTGTCAACAGCCCTCCGAAGATGCAGTCACTGCTG
AAGTCCCCACTGATGATATCAAGAAGGGACTGGAAGAGTTTGACCTATTC
GTAAGCACACAAGAGTTTTGGGATGCAGCGCTGCTCCTCGCCAAACAAGA
CCCCCCGTTCGTTATGGCGGTGCCCGCCCACGCGCCTACCCATCTGAAGT
TTGTACCTGGAAGACTGGTTTCCGATACACGTCACAAGACCGTAGAAGAG
CTCATCTTCAGGCGGTATGGTGGCACTGGAAGACGCATATTTAAAGCGTT
AGCGTTGGAAGGCGCTATGGAGGAGAAGATGCTCGCTGAGAAATGTATGC
TACCGCTCAAAGTGGTAAGAGAGAATTTGTTTCGTATGTACCAGGATCGT
GTTGTCTCTACTCAGGAAGTCCCTCGTTCGAATGATCAGCAGCGAGCCGG
CAACTGGTTTTATTTGTGGAAGGTGAACACCTTCTCTTTACATCGCAGCT
TGCTCGAGGTGATGTACAAGACATTACTCAACTTGTTTGCACAATATGAG
ACGTTAGACAACGATACAAAAAACCCGCAAGAGCAGAAGAAGATGAAGAA
CCGTGAAACTCTTCTCGTTTCCAGTATTCTCAGAGTCGACCAGTCTATCA
TGGTTATGCGAGATTTTGGTCCCATTACTGCTGCATATTTTCCGTCAAAG
TATGAAATACTTGATGGATATATATTACAAAGTAAAAAGCGACGGCGAAG
AGTTGCGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1385763..1387472-

>Gchil2498.t1 ID=Gchil2498.t1|Name=Gchil2498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1710bp|location=Sequence derived from alignment at tig00004400_pilon:1385763..1387472- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCCGACAGCATGAGGCGCTCGCGTGCGCCATAGCGCGCTTCCATTT
CAGGCCCATTGTCGCCGAGACGGTGCGTCTGTTGTGCCTGCACCCGGGCT
CCACGCTGCCCGCGCTGTCGCGGCTGTTGTCGCCCTTCTTCGAGACGCTT
TCGGCGCGCAATCATAAGCTGCAGCGCGTTGTGGGTGACGAGCAGCGCCG
CGGCTTTGCGCGTGATTCTCTGGCTGTGCTGTGTCAGCATGGCATTGTGT
ACTACGTTGAACGGGTGCTGCCCGGCGCTGCTAAGAGTGCCGCGGTGAAC
GGCGCCCGCTCGTCGCCCTCGCAGCCGCGCACCGTCATTCAGTACTACTG
CGATGTCAACGTGCTGCTGTATAGACCTCGTCTGCCTCTGTATCTCGGCT
GGGCGCTGCGGCGCTTTGGCGAGTTTGGTTACGCCGTGCTGTCCGCTTTG
CTCGAGAGAGGGCGTCTCACCTCAGCACAGCTCTTCAAGTGTACCTTGAC
GCCCAAGATGGCTGAGTTTCCTTTATCTCAAGCCGATATACAGGCCTGTC
TCATTGACATGGTGCAGTCCGGCGTCGTGCATTGGTGCGGAAAGCGCAAA
CGCCGCTCCTCCTTAGTGGCCAGAATCCACAAGCAAAACGAACAAGCTGC
CGTTGACGCTGTCGGTTCTAAGCGACCCAACCCGGATGCCATGCATTACG
ATTACGAAGACGATGACGATGACGATGACTATGACGATGAACAAGATGAT
CGCCAACGCATTCAGATTGGGAGGGGTGATCATATACGTTCTGTCATTGT
TCCAGACAAGGATAACGACATCGATATCTGGGGCGTCTGCTTCTGCCATC
TCAATCGCGAATTCCGAAACGAGTGCTGCATCATGGTCGTAGCAACTCGC
GTTCCAAATGAACTTTCAATTCACATCCTGCGCGTCGGCTTGCAAATCGC
CTTGTCTAGAGAGGACTGTCAACAGCCCTCCGAAGATGCAGTCACTGCTG
AAGTCCCCACTGATGATATCAAGAAGGGACTGGAAGAGTTTGACCTATTC
GTAAGCACACAAGAGTTTTGGGATGCAGCGCTGCTCCTCGCCAAACAAGA
CCCCCCGTTCGTTATGGCGGTGCCCGCCCACGCGCCTACCCATCTGAAGT
TTGTACCTGGAAGACTGGTTTCCGATACACGTCACAAGACCGTAGAAGAG
CTCATCTTCAGGCGGTATGGTGGCACTGGAAGACGCATATTTAAAGCGTT
AGCGTTGGAAGGCGCTATGGAGGAGAAGATGCTCGCTGAGAAATGTATGC
TACCGCTCAAAGTGGTAAGAGAGAATTTGTTTCGTATGTACCAGGATCGT
GTTGTCTCTACTCAGGAAGTCCCTCGTTCGAATGATCAGCAGCGAGCCGG
CAACTGGTTTTATTTGTGGAAGGTGAACACCTTCTCTTTACATCGCAGCT
TGCTCGAGGTGATGTACAAGACATTACTCAACTTGTTTGCACAATATGAG
ACGTTAGACAACGATACAAAAAACCCGCAAGAGCAGAAGAAGATGAAGAA
CCGTGAAACTCTTCTCGTTTCCAGTATTCTCAGAGTCGACCAGTCTATCA
TGGTTATGCGAGATTTTGGTCCCATTACTGCTGCATATTTTCCGTCAAAG
TATGAAATACTTGATGGATATATATTACAAAGTAAAAAGCGACGGCGAAG
AGTTGCGTGA
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