Gchil2496.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2496.t1
Unique NameGchil2496.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1383239..1384315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SM42
PFAMsCwf_Cwc_15
Max annot lvl3041|Chlorophyta
KEGG koko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Evalue1.04e-22
EggNOG OGsKOG3228@1|root,KOG3228@2759|Eukaryota,37RUK@33090|Viridiplantae,34HWP@3041|Chlorophyta
DescriptionCwf15 Cwc15 cell cycle control protein. This family represents Cwf15 Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2496Gchil2496Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1383239..1384315 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2496.t1.stop1Gchil2496.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1383239..1383241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2496.t1.CDS1Gchil2496.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1383239..1384315 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2496.t1.exon1Gchil2496.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1383239..1384315 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2496.t1.start1Gchil2496.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1384313..1384315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2496.t1Gchil2496.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1383239..1384315 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2496.t1 ID=Gchil2496.t1|Name=Gchil2496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=359bp
MTAVHNLIFSDEYFWNRKRNENLLKLRVPAAPSTVRSAQKQRTKLAQLHR
LALTPLRLAPLCRAALRLSSTPPKSRIMTTAHRATWKAARGGLQEEGSFR
LHAPSVAVSGKDAPTERTLKKRHFTPADASRDEMRLRIDNEEEHVSKRPR
RSRFGPTPEADAGGEAGQRLLLAPSDAAETQGSAAKEKHSNSPDEDENGV
AAVRNDVQSGAAVDATEADGADEGKHFDQSQQDSDSEDDESEEDEAELLA
ELERIRKEREFDKAKKQAEEQERLEREETTKAASENPLLAQLSNFNDEIS
ETASIATGSVPAFAVRRRWDDDVVFRNQARGERSHRPRFLNDTIRNDFHK
RFMKQYMR*
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spliced messenger RNA

>Gchil2496.t1 ID=Gchil2496.t1|Name=Gchil2496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004400_pilon:1383239..1384315- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCTGTGCACAACCTAATATTTTCTGATGAATACTTTTGGAATCG
CAAAAGAAATGAAAATCTTCTCAAGCTTAGAGTGCCAGCCGCACCCTCCA
CCGTCCGTAGCGCCCAAAAGCAACGAACTAAACTCGCCCAGCTCCACCGT
CTCGCTTTAACCCCTCTTCGCCTCGCCCCTCTTTGCCGCGCCGCACTCCG
CCTCTCGAGCACTCCACCCAAATCCCGCATCATGACCACCGCGCATCGAG
CCACATGGAAGGCGGCAAGAGGTGGGCTTCAAGAAGAAGGCAGCTTTCGG
CTCCACGCTCCGTCCGTTGCCGTTTCTGGAAAGGACGCACCAACAGAGCG
CACGTTGAAGAAACGTCATTTCACCCCCGCCGATGCGTCGCGCGATGAAA
TGCGTTTGCGCATTGACAACGAAGAAGAGCACGTGAGCAAGAGACCTAGG
CGTTCCCGCTTCGGACCAACCCCGGAAGCTGACGCCGGTGGCGAAGCGGG
TCAAAGGCTGCTTTTAGCGCCTTCTGACGCAGCAGAGACGCAAGGAAGCG
CAGCGAAAGAGAAACATTCAAATTCGCCAGATGAGGATGAAAACGGTGTA
GCAGCAGTGCGCAACGACGTTCAGTCCGGGGCCGCCGTGGATGCAACCGA
AGCTGATGGCGCCGACGAAGGCAAACACTTCGACCAATCCCAACAAGATT
CCGACAGCGAAGACGATGAGTCCGAAGAGGACGAGGCCGAGCTTCTGGCA
GAGCTTGAACGAATTCGCAAGGAACGCGAGTTTGACAAAGCAAAGAAACA
AGCCGAAGAGCAAGAGCGCTTGGAACGGGAAGAAACCACAAAAGCGGCTT
CGGAAAACCCCTTACTCGCGCAATTGTCAAACTTCAACGATGAAATTAGC
GAGACGGCGAGTATTGCTACTGGCAGTGTGCCGGCGTTTGCTGTTAGAAG
GCGGTGGGATGACGACGTTGTGTTTCGCAACCAAGCTCGAGGGGAACGCA
GCCACAGACCTAGATTCCTCAACGATACTATCAGGAACGACTTTCACAAG
AGATTCATGAAGCAGTATATGCGGTAG
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protein sequence of Gchil2496.t1

>Gchil2496.t1 ID=Gchil2496.t1|Name=Gchil2496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=359bp
MTAVHNLIFSDEYFWNRKRNENLLKLRVPAAPSTVRSAQKQRTKLAQLHR
LALTPLRLAPLCRAALRLSSTPPKSRIMTTAHRATWKAARGGLQEEGSFR
LHAPSVAVSGKDAPTERTLKKRHFTPADASRDEMRLRIDNEEEHVSKRPR
RSRFGPTPEADAGGEAGQRLLLAPSDAAETQGSAAKEKHSNSPDEDENGV
AAVRNDVQSGAAVDATEADGADEGKHFDQSQQDSDSEDDESEEDEAELLA
ELERIRKEREFDKAKKQAEEQERLEREETTKAASENPLLAQLSNFNDEIS
ETASIATGSVPAFAVRRRWDDDVVFRNQARGERSHRPRFLNDTIRNDFHK
RFMKQYMR*
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mRNA from alignment at tig00004400_pilon:1383239..1384315-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2496.t1 ID=Gchil2496.t1|Name=Gchil2496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004400_pilon:1383239..1384315- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCTGTGCACAACCTAATATTTTCTGATGAATACTTTTGGAATCG
CAAAAGAAATGAAAATCTTCTCAAGCTTAGAGTGCCAGCCGCACCCTCCA
CCGTCCGTAGCGCCCAAAAGCAACGAACTAAACTCGCCCAGCTCCACCGT
CTCGCTTTAACCCCTCTTCGCCTCGCCCCTCTTTGCCGCGCCGCACTCCG
CCTCTCGAGCACTCCACCCAAATCCCGCATCATGACCACCGCGCATCGAG
CCACATGGAAGGCGGCAAGAGGTGGGCTTCAAGAAGAAGGCAGCTTTCGG
CTCCACGCTCCGTCCGTTGCCGTTTCTGGAAAGGACGCACCAACAGAGCG
CACGTTGAAGAAACGTCATTTCACCCCCGCCGATGCGTCGCGCGATGAAA
TGCGTTTGCGCATTGACAACGAAGAAGAGCACGTGAGCAAGAGACCTAGG
CGTTCCCGCTTCGGACCAACCCCGGAAGCTGACGCCGGTGGCGAAGCGGG
TCAAAGGCTGCTTTTAGCGCCTTCTGACGCAGCAGAGACGCAAGGAAGCG
CAGCGAAAGAGAAACATTCAAATTCGCCAGATGAGGATGAAAACGGTGTA
GCAGCAGTGCGCAACGACGTTCAGTCCGGGGCCGCCGTGGATGCAACCGA
AGCTGATGGCGCCGACGAAGGCAAACACTTCGACCAATCCCAACAAGATT
CCGACAGCGAAGACGATGAGTCCGAAGAGGACGAGGCCGAGCTTCTGGCA
GAGCTTGAACGAATTCGCAAGGAACGCGAGTTTGACAAAGCAAAGAAACA
AGCCGAAGAGCAAGAGCGCTTGGAACGGGAAGAAACCACAAAAGCGGCTT
CGGAAAACCCCTTACTCGCGCAATTGTCAAACTTCAACGATGAAATTAGC
GAGACGGCGAGTATTGCTACTGGCAGTGTGCCGGCGTTTGCTGTTAGAAG
GCGGTGGGATGACGACGTTGTGTTTCGCAACCAAGCTCGAGGGGAACGCA
GCCACAGACCTAGATTCCTCAACGATACTATCAGGAACGACTTTCACAAG
AGATTCATGAAGCAGTATATGCGGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1383239..1384315-

>Gchil2496.t1 ID=Gchil2496.t1|Name=Gchil2496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00004400_pilon:1383239..1384315- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCTGTGCACAACCTAATATTTTCTGATGAATACTTTTGGAATCG
CAAAAGAAATGAAAATCTTCTCAAGCTTAGAGTGCCAGCCGCACCCTCCA
CCGTCCGTAGCGCCCAAAAGCAACGAACTAAACTCGCCCAGCTCCACCGT
CTCGCTTTAACCCCTCTTCGCCTCGCCCCTCTTTGCCGCGCCGCACTCCG
CCTCTCGAGCACTCCACCCAAATCCCGCATCATGACCACCGCGCATCGAG
CCACATGGAAGGCGGCAAGAGGTGGGCTTCAAGAAGAAGGCAGCTTTCGG
CTCCACGCTCCGTCCGTTGCCGTTTCTGGAAAGGACGCACCAACAGAGCG
CACGTTGAAGAAACGTCATTTCACCCCCGCCGATGCGTCGCGCGATGAAA
TGCGTTTGCGCATTGACAACGAAGAAGAGCACGTGAGCAAGAGACCTAGG
CGTTCCCGCTTCGGACCAACCCCGGAAGCTGACGCCGGTGGCGAAGCGGG
TCAAAGGCTGCTTTTAGCGCCTTCTGACGCAGCAGAGACGCAAGGAAGCG
CAGCGAAAGAGAAACATTCAAATTCGCCAGATGAGGATGAAAACGGTGTA
GCAGCAGTGCGCAACGACGTTCAGTCCGGGGCCGCCGTGGATGCAACCGA
AGCTGATGGCGCCGACGAAGGCAAACACTTCGACCAATCCCAACAAGATT
CCGACAGCGAAGACGATGAGTCCGAAGAGGACGAGGCCGAGCTTCTGGCA
GAGCTTGAACGAATTCGCAAGGAACGCGAGTTTGACAAAGCAAAGAAACA
AGCCGAAGAGCAAGAGCGCTTGGAACGGGAAGAAACCACAAAAGCGGCTT
CGGAAAACCCCTTACTCGCGCAATTGTCAAACTTCAACGATGAAATTAGC
GAGACGGCGAGTATTGCTACTGGCAGTGTGCCGGCGTTTGCTGTTAGAAG
GCGGTGGGATGACGACGTTGTGTTTCGCAACCAAGCTCGAGGGGAACGCA
GCCACAGACCTAGATTCCTCAACGATACTATCAGGAACGACTTTCACAAG
AGATTCATGAAGCAGTATATGCGGTAG
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