Gchil2493.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2493.t1
Unique Name	Gchil2493.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	703

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1375926..1378034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G4S8
PFAMs	DEAD,Helicase_C
Max annot lvl	2759\|Eukaryota
Evalue	2.82e-74
EggNOG OGs	COG0513@1\|root,KOG0327@2759\|Eukaryota
Description	helicase activity
COG category	JKL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2493	Gchil2493	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1375926..1378034 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2493.t1.start1	Gchil2493.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1375926..1375928 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2493.t1.CDS1	Gchil2493.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1375926..1378034 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2493.t1.exon1	Gchil2493.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1375926..1378034 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2493.t1.stop1	Gchil2493.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1378032..1378034 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2493.t1	Gchil2493.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1375926..1378034 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1375926..1378034+
coding sequence from alignment at tig00004400_pilon:1375926..1378034+

mRNA sequence

>Gchil2493.t1 ID=Gchil2493.t1|Name=Gchil2493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=703bp
MMRLKRTDNGAFISTGFGVIGLRGLEGNTVRRTCVERRRQVAPNVTRAVL
EVSKNSDINEEGAAGAQGEPSTTTPLFNDIGIAGEDGDAELEENGDWYRI
VDRISKQDEAANLTISSQNASGNAVFDLGAVDENSRTLLTRNCYAGVVNV
DIEEGGVLADDEDNNDMFCGVGLEALVESEELLENLEKNFGITTATHVQL
AAIPRVTDGKDIVIQSHTGSGKTLAFLLPVLDEIDIEHDITQVVIVAPTR
ELAMQISRECDRLIEGTDIRNMALIGGANPARQAEKLRKKTPHIVTGTPG
RLAELHEGRDLNLRHVQTLIVDEVDQCLQEVFMKHITRLLHAVRSAQKVL
VSATGDVDSVRNFAMENMNAPVLLRVGGSQRIPKAISHWHYLVPARLKID
ALRKLMYSEPVPTRAIVFVDDPRRVDIVVHRLHQMKLAAGGLRGNAHKLE
RAEVLTAFRKGRVVMLVTTEVAARGLDVRDITHVINLDMPTDGDHYLHRA
GRCGRIGGDGHVISITNAETAFVVTRLARELGIEITRMEPRGGAYREPLD
RSSSVKHRTLKDKESLTTTKRNGSRGRDASSQSGKGGSLNGSIVTPRNAP
TRARLSDKKAVQNERRLREVLGGTGKPKRKKLKEVNKKTEARERIKTKLK
AKEKAETRAVSRAKAKKNESSAKVSGTDATSLNRKSMNPSAVAKREGWVG
NR*

spliced messenger RNA

>Gchil2493.t1 ID=Gchil2493.t1|Name=Gchil2493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at tig00004400_pilon:1375926..1378034+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGATTAAAACGGACTGACAATGGTGCCTTTATATCGACAGGTTT
CGGTGTAATTGGTTTGAGAGGACTTGAAGGCAACACTGTGCGACGTACGT
GTGTCGAGAGACGGAGACAAGTCGCACCAAACGTGACAAGAGCTGTCCTA
GAGGTTAGTAAAAATAGTGATATCAATGAGGAAGGCGCAGCCGGCGCGCA
GGGTGAACCGTCAACTACGACACCCCTTTTCAATGATATAGGCATAGCAG
GCGAGGATGGAGACGCAGAATTGGAGGAGAACGGTGACTGGTATAGAATA
GTTGATAGAATAAGCAAGCAAGACGAAGCCGCCAACCTGACCATTTCATC
TCAAAACGCAAGTGGCAACGCTGTGTTTGACCTAGGGGCCGTAGATGAAA
ACAGCAGAACACTGCTCACTCGTAATTGCTACGCTGGCGTAGTAAATGTA
GATATTGAAGAAGGTGGTGTTCTCGCTGATGATGAAGATAACAACGATAT
GTTCTGCGGAGTTGGGCTTGAAGCGCTTGTTGAATCGGAAGAACTTTTAG
AGAATCTGGAGAAGAACTTCGGAATCACAACGGCGACTCATGTTCAACTA
GCTGCTATTCCTCGAGTAACTGACGGAAAAGATATTGTCATACAGAGTCA
CACTGGATCGGGGAAAACTCTGGCATTCTTACTTCCAGTTTTGGATGAAA
TAGATATTGAACATGACATCACGCAAGTGGTTATCGTTGCTCCCACTCGA
GAATTGGCAATGCAGATTTCTCGGGAATGTGATCGATTAATTGAGGGCAC
TGATATTCGCAATATGGCGTTAATTGGGGGTGCGAATCCGGCGAGACAAG
CTGAAAAGCTTCGAAAGAAAACCCCTCATATCGTTACTGGCACACCGGGG
CGCCTGGCGGAACTACACGAGGGAAGAGATCTGAATTTAAGGCATGTGCA
GACACTTATAGTCGATGAAGTCGACCAGTGTCTACAGGAAGTTTTCATGA
AGCACATAACGCGTCTGCTTCATGCGGTTCGAAGCGCACAAAAGGTGCTT
GTCTCTGCCACGGGAGACGTTGACTCTGTTCGCAATTTCGCGATGGAAAA
CATGAATGCCCCTGTTTTACTGCGCGTTGGTGGCTCGCAAAGAATCCCGA
AGGCGATATCTCACTGGCATTATCTTGTACCAGCGCGTTTAAAGATTGAT
GCGCTTAGAAAGCTCATGTACTCAGAGCCAGTTCCGACAAGGGCAATTGT
GTTCGTGGACGATCCACGAAGAGTGGATATCGTGGTACACAGACTACATC
AGATGAAACTCGCCGCTGGAGGATTGCGTGGAAATGCACACAAGCTTGAA
CGAGCAGAGGTGCTAACTGCATTCAGAAAAGGGCGTGTGGTTATGTTGGT
AACAACGGAGGTCGCCGCTAGAGGCTTGGACGTTCGGGACATCACCCATG
TTATCAACTTGGATATGCCCACTGACGGGGATCATTATCTACACCGAGCT
GGAAGATGCGGACGCATTGGAGGTGACGGTCACGTGATAAGCATTACAAA
CGCCGAGACAGCGTTTGTTGTGACTCGGTTGGCTCGAGAATTGGGCATAG
AAATCACAAGAATGGAACCGCGAGGAGGAGCATATCGCGAGCCGTTGGAC
AGAAGCAGCAGTGTCAAGCACCGAACGCTGAAAGATAAAGAATCACTAAC
AACTACGAAAAGAAATGGATCGCGTGGCAGAGACGCTTCGTCTCAATCAG
GAAAGGGGGGAAGTCTTAACGGATCCATAGTCACGCCGCGAAACGCGCCT
ACACGCGCGAGGCTTAGCGACAAGAAGGCTGTTCAGAATGAGCGACGACT
CAGAGAGGTTTTGGGTGGTACCGGCAAGCCGAAGAGGAAGAAGTTAAAGG
AAGTGAACAAAAAGACCGAGGCGAGAGAACGAATTAAGACTAAATTGAAG
GCAAAAGAGAAGGCCGAGACCAGAGCGGTAAGCAGAGCGAAAGCCAAGAA
AAATGAAAGCAGTGCCAAAGTCAGCGGCACTGATGCAACAAGCCTAAACA
GAAAGAGCATGAATCCAAGTGCCGTAGCGAAGAGGGAAGGCTGGGTCGGC
AATCGCTAA

protein sequence of Gchil2493.t1

>Gchil2493.t1 ID=Gchil2493.t1|Name=Gchil2493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=703bp
MMRLKRTDNGAFISTGFGVIGLRGLEGNTVRRTCVERRRQVAPNVTRAVL
EVSKNSDINEEGAAGAQGEPSTTTPLFNDIGIAGEDGDAELEENGDWYRI
VDRISKQDEAANLTISSQNASGNAVFDLGAVDENSRTLLTRNCYAGVVNV
DIEEGGVLADDEDNNDMFCGVGLEALVESEELLENLEKNFGITTATHVQL
AAIPRVTDGKDIVIQSHTGSGKTLAFLLPVLDEIDIEHDITQVVIVAPTR
ELAMQISRECDRLIEGTDIRNMALIGGANPARQAEKLRKKTPHIVTGTPG
RLAELHEGRDLNLRHVQTLIVDEVDQCLQEVFMKHITRLLHAVRSAQKVL
VSATGDVDSVRNFAMENMNAPVLLRVGGSQRIPKAISHWHYLVPARLKID
ALRKLMYSEPVPTRAIVFVDDPRRVDIVVHRLHQMKLAAGGLRGNAHKLE
RAEVLTAFRKGRVVMLVTTEVAARGLDVRDITHVINLDMPTDGDHYLHRA
GRCGRIGGDGHVISITNAETAFVVTRLARELGIEITRMEPRGGAYREPLD
RSSSVKHRTLKDKESLTTTKRNGSRGRDASSQSGKGGSLNGSIVTPRNAP
TRARLSDKKAVQNERRLREVLGGTGKPKRKKLKEVNKKTEARERIKTKLK
AKEKAETRAVSRAKAKKNESSAKVSGTDATSLNRKSMNPSAVAKREGWVG
NR*

mRNA from alignment at tig00004400_pilon:1375926..1378034+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2493.t1 ID=Gchil2493.t1|Name=Gchil2493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at tig00004400_pilon:1375926..1378034+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCGATTAAAACGGACTGACAATGGTGCCTTTATATCGACAGGTTT
CGGTGTAATTGGTTTGAGAGGACTTGAAGGCAACACTGTGCGACGTACGT
GTGTCGAGAGACGGAGACAAGTCGCACCAAACGTGACAAGAGCTGTCCTA
GAGGTTAGTAAAAATAGTGATATCAATGAGGAAGGCGCAGCCGGCGCGCA
GGGTGAACCGTCAACTACGACACCCCTTTTCAATGATATAGGCATAGCAG
GCGAGGATGGAGACGCAGAATTGGAGGAGAACGGTGACTGGTATAGAATA
GTTGATAGAATAAGCAAGCAAGACGAAGCCGCCAACCTGACCATTTCATC
TCAAAACGCAAGTGGCAACGCTGTGTTTGACCTAGGGGCCGTAGATGAAA
ACAGCAGAACACTGCTCACTCGTAATTGCTACGCTGGCGTAGTAAATGTA
GATATTGAAGAAGGTGGTGTTCTCGCTGATGATGAAGATAACAACGATAT
GTTCTGCGGAGTTGGGCTTGAAGCGCTTGTTGAATCGGAAGAACTTTTAG
AGAATCTGGAGAAGAACTTCGGAATCACAACGGCGACTCATGTTCAACTA
GCTGCTATTCCTCGAGTAACTGACGGAAAAGATATTGTCATACAGAGTCA
CACTGGATCGGGGAAAACTCTGGCATTCTTACTTCCAGTTTTGGATGAAA
TAGATATTGAACATGACATCACGCAAGTGGTTATCGTTGCTCCCACTCGA
GAATTGGCAATGCAGATTTCTCGGGAATGTGATCGATTAATTGAGGGCAC
TGATATTCGCAATATGGCGTTAATTGGGGGTGCGAATCCGGCGAGACAAG
CTGAAAAGCTTCGAAAGAAAACCCCTCATATCGTTACTGGCACACCGGGG
CGCCTGGCGGAACTACACGAGGGAAGAGATCTGAATTTAAGGCATGTGCA
GACACTTATAGTCGATGAAGTCGACCAGTGTCTACAGGAAGTTTTCATGA
AGCACATAACGCGTCTGCTTCATGCGGTTCGAAGCGCACAAAAGGTGCTT
GTCTCTGCCACGGGAGACGTTGACTCTGTTCGCAATTTCGCGATGGAAAA
CATGAATGCCCCTGTTTTACTGCGCGTTGGTGGCTCGCAAAGAATCCCGA
AGGCGATATCTCACTGGCATTATCTTGTACCAGCGCGTTTAAAGATTGAT
GCGCTTAGAAAGCTCATGTACTCAGAGCCAGTTCCGACAAGGGCAATTGT
GTTCGTGGACGATCCACGAAGAGTGGATATCGTGGTACACAGACTACATC
AGATGAAACTCGCCGCTGGAGGATTGCGTGGAAATGCACACAAGCTTGAA
CGAGCAGAGGTGCTAACTGCATTCAGAAAAGGGCGTGTGGTTATGTTGGT
AACAACGGAGGTCGCCGCTAGAGGCTTGGACGTTCGGGACATCACCCATG
TTATCAACTTGGATATGCCCACTGACGGGGATCATTATCTACACCGAGCT
GGAAGATGCGGACGCATTGGAGGTGACGGTCACGTGATAAGCATTACAAA
CGCCGAGACAGCGTTTGTTGTGACTCGGTTGGCTCGAGAATTGGGCATAG
AAATCACAAGAATGGAACCGCGAGGAGGAGCATATCGCGAGCCGTTGGAC
AGAAGCAGCAGTGTCAAGCACCGAACGCTGAAAGATAAAGAATCACTAAC
AACTACGAAAAGAAATGGATCGCGTGGCAGAGACGCTTCGTCTCAATCAG
GAAAGGGGGGAAGTCTTAACGGATCCATAGTCACGCCGCGAAACGCGCCT
ACACGCGCGAGGCTTAGCGACAAGAAGGCTGTTCAGAATGAGCGACGACT
CAGAGAGGTTTTGGGTGGTACCGGCAAGCCGAAGAGGAAGAAGTTAAAGG
AAGTGAACAAAAAGACCGAGGCGAGAGAACGAATTAAGACTAAATTGAAG
GCAAAAGAGAAGGCCGAGACCAGAGCGGTAAGCAGAGCGAAAGCCAAGAA
AAATGAAAGCAGTGCCAAAGTCAGCGGCACTGATGCAACAAGCCTAAACA
GAAAGAGCATGAATCCAAGTGCCGTAGCGAAGAGGGAAGGCTGGGTCGGC
AATCGCTAA

Coding sequence (CDS) from alignment at tig00004400_pilon:1375926..1378034+

>Gchil2493.t1 ID=Gchil2493.t1|Name=Gchil2493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2109bp|location=Sequence derived from alignment at tig00004400_pilon:1375926..1378034+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCGATTAAAACGGACTGACAATGGTGCCTTTATATCGACAGGTTT
CGGTGTAATTGGTTTGAGAGGACTTGAAGGCAACACTGTGCGACGTACGT
GTGTCGAGAGACGGAGACAAGTCGCACCAAACGTGACAAGAGCTGTCCTA
GAGGTTAGTAAAAATAGTGATATCAATGAGGAAGGCGCAGCCGGCGCGCA
GGGTGAACCGTCAACTACGACACCCCTTTTCAATGATATAGGCATAGCAG
GCGAGGATGGAGACGCAGAATTGGAGGAGAACGGTGACTGGTATAGAATA
GTTGATAGAATAAGCAAGCAAGACGAAGCCGCCAACCTGACCATTTCATC
TCAAAACGCAAGTGGCAACGCTGTGTTTGACCTAGGGGCCGTAGATGAAA
ACAGCAGAACACTGCTCACTCGTAATTGCTACGCTGGCGTAGTAAATGTA
GATATTGAAGAAGGTGGTGTTCTCGCTGATGATGAAGATAACAACGATAT
GTTCTGCGGAGTTGGGCTTGAAGCGCTTGTTGAATCGGAAGAACTTTTAG
AGAATCTGGAGAAGAACTTCGGAATCACAACGGCGACTCATGTTCAACTA
GCTGCTATTCCTCGAGTAACTGACGGAAAAGATATTGTCATACAGAGTCA
CACTGGATCGGGGAAAACTCTGGCATTCTTACTTCCAGTTTTGGATGAAA
TAGATATTGAACATGACATCACGCAAGTGGTTATCGTTGCTCCCACTCGA
GAATTGGCAATGCAGATTTCTCGGGAATGTGATCGATTAATTGAGGGCAC
TGATATTCGCAATATGGCGTTAATTGGGGGTGCGAATCCGGCGAGACAAG
CTGAAAAGCTTCGAAAGAAAACCCCTCATATCGTTACTGGCACACCGGGG
CGCCTGGCGGAACTACACGAGGGAAGAGATCTGAATTTAAGGCATGTGCA
GACACTTATAGTCGATGAAGTCGACCAGTGTCTACAGGAAGTTTTCATGA
AGCACATAACGCGTCTGCTTCATGCGGTTCGAAGCGCACAAAAGGTGCTT
GTCTCTGCCACGGGAGACGTTGACTCTGTTCGCAATTTCGCGATGGAAAA
CATGAATGCCCCTGTTTTACTGCGCGTTGGTGGCTCGCAAAGAATCCCGA
AGGCGATATCTCACTGGCATTATCTTGTACCAGCGCGTTTAAAGATTGAT
GCGCTTAGAAAGCTCATGTACTCAGAGCCAGTTCCGACAAGGGCAATTGT
GTTCGTGGACGATCCACGAAGAGTGGATATCGTGGTACACAGACTACATC
AGATGAAACTCGCCGCTGGAGGATTGCGTGGAAATGCACACAAGCTTGAA
CGAGCAGAGGTGCTAACTGCATTCAGAAAAGGGCGTGTGGTTATGTTGGT
AACAACGGAGGTCGCCGCTAGAGGCTTGGACGTTCGGGACATCACCCATG
TTATCAACTTGGATATGCCCACTGACGGGGATCATTATCTACACCGAGCT
GGAAGATGCGGACGCATTGGAGGTGACGGTCACGTGATAAGCATTACAAA
CGCCGAGACAGCGTTTGTTGTGACTCGGTTGGCTCGAGAATTGGGCATAG
AAATCACAAGAATGGAACCGCGAGGAGGAGCATATCGCGAGCCGTTGGAC
AGAAGCAGCAGTGTCAAGCACCGAACGCTGAAAGATAAAGAATCACTAAC
AACTACGAAAAGAAATGGATCGCGTGGCAGAGACGCTTCGTCTCAATCAG
GAAAGGGGGGAAGTCTTAACGGATCCATAGTCACGCCGCGAAACGCGCCT
ACACGCGCGAGGCTTAGCGACAAGAAGGCTGTTCAGAATGAGCGACGACT
CAGAGAGGTTTTGGGTGGTACCGGCAAGCCGAAGAGGAAGAAGTTAAAGG
AAGTGAACAAAAAGACCGAGGCGAGAGAACGAATTAAGACTAAATTGAAG
GCAAAAGAGAAGGCCGAGACCAGAGCGGTAAGCAGAGCGAAAGCCAAGAA
AAATGAAAGCAGTGCCAAAGTCAGCGGCACTGATGCAACAAGCCTAAACA
GAAAGAGCATGAATCCAAGTGCCGTAGCGAAGAGGGAAGGCTGGGTCGGC
AATCGCTAA