|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 3067.XP_002947651.1 |
| PFAMs | Ribos_L4_asso_C,Ribosomal_L4 |
| Max annot lvl | 3041|Chlorophyta |
| KEGG ko | ko:K02930 |
| KEGG Pathway | ko03010,map03010 |
| KEGG Module | M00177,M00179 |
| Evalue | 1.41e-142 |
| EggNOG OGs | COG0088@1|root,KOG1475@2759|Eukaryota,37JR5@33090|Viridiplantae,34GSZ@3041|Chlorophyta |
| Description | Ribosomal protein L4 |
| COG category | J |
| BRITE | br01610,ko00000,ko00001,ko00002,ko03011 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil2489.t1 ID=Gchil2489.t1|Name=Gchil2489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=704bp MCSTTRFAVGLELRRTERAAADATDAADAAVVTQHMHRAIPSTLFDAVVK YEASAALLCSQLRLARSEAQLLCDQAAVVAAHCAKCPDTHTPQCVLDASQ TSSPDVARFETMFLRASEHELRFAHLLHARLLHLAHHPSPDASDHEQSPL QTNHAAPLPERCGFSRRVPPDVSAVCNGVGIMKTAHGLYRTARSACSVRV RPNASFYFEAVVVDDTGVGGICIGVCGPAQSHTQILGADAASCGLHSTGQ LVHNFASFRALASQRFTRGDRVGVLVRRTACDTVHVGFTVNGARVGHTQS AQLAQEPRWWAAPNRAARAAASPQPDTESLPRSPFAQPAMATTAAARPVV SVLSAETGQPSRSVPMPTVFSAPIRNDIVQFVHTNMRKNSRQPYAVNRMS GMQSSAASWGTGRAVSRIPRVPGGGTHRSGQGAFGNMCRGGRMFAPTKIW RKWHRKVPLNQKRYATASALAASALPALVMARGHEIDDVPEVPLVVDTSV EGFTKTAKAVTLLKSLGAYDDVERVMETKNLRAGKGKMRNRRYKQRRGPL VVYDSDDGIVRAFRNLPGVDLCNVARLNLLQLAPGGHVGRFIIWTEGAVA KLDHIYGTGESGTSAKKSYMLPKNIISNSDVARIINSDEIQSVVRPIAER KMHIQRKKNPLRNKEMLFKLNPHARIRKKDQKLEKTPYDKSLGVKFYEKM MAD* back to topspliced messenger RNA >Gchil2489.t1 ID=Gchil2489.t1|Name=Gchil2489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00004400_pilon:1362640..1365958+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTGCTCCACGACTCGCTTCGCAGTCGGTCTAGAGCTGCGGCGCACCGA GCGcgccgccgcagacgccacagacgccgcagacgccgccgTAGTGACGC AACACATGCATCGCGCCATCCCGTCCACGCTGTTCGACGCCGTCGTGAAA TACGAAGCGTCCGCCGCCCTGCTGTGCTCCCAACTGCGTCTGGCGCGCAG CGAGGCTCAATTACTCTGCGATCAGGCCGCCGTCGTTGCGGCCCACTGCG CCAAGTGCCCCGACACACACACCCCACAATGCGTGCTTGACGCGTCGCAA ACGTCATCACCCGACGTCGCCCGCTTTGAAACCATGTTTCTACGTGCCTC CGAACATGAGCTACGTTTCGCCCATCTCTTACACGCCCGTCTGCTTCATT TGGCGCATCACCCCTCTCCCGACGCTTCCGACCACGAGCAGTCGCCGTTG CAAACCAATCACGCCGCGCCCCTGCCCGAGCGTTGCGGCTTTTCACGTCG AGTACCGCCCGATGTGAGCGCCGTCTGCAACGGTGTGGGTATCATGAAGA CCGCACACGGATTGTATCGAACCGCGCGCAGCGCATGTAGCGTGCGCGTG CGTCCCAACGCAAGCTTCTACTTTGAGGCAGTCGTGGTGGACGACACAGG CGTTGGTGGCATTTGCATCGGCGTATGTGGCCCCGCCCAAAGCCACACCC AAATACTCGGCGCAGACGCCGCCAGCTGCGGGCTGCACAGCACCGGCCAG TTGGTGCACAACTTTGCCTCGTTCCGTGCGTTGGCGTCTCAGCGTTTCAC GCGCGGCGATCGCGTCGGTGTTTTAGTGAGACGTACCGCCTGTGACACCG TTCACGTCGGCTTCACGGTGAACGGCGCGCGTGTGGGACACACTCAAAGT GCGCAGCTGGCTCAGGAACCGCGCTGGTGGGCCGCTCCTAACCGAGCTGC GCGCGCCGCTGCCTCGCCGCAGCCCGAcACCGAAAGCCTCCCTCGATCCC CGTTCGCGCAACCTGCCATGGCCACCACCGCCGCCGCGCGCCCAGTCGTC TCCGTCCTCAGCGCGGAGACGGGGCAACCCTCACGTTCCGTCCCCATGCC CACCGTCTTCTCCGCCCCGATCCGCAACGACATCGTGCAGTTCGTCCACA CCAACATGCGAAAGAACAGTCGTCAACCCTACGCCGTCAACAGAATGTCC GGGATGCAGTCCTCCGCCGCCTCTTGGGGCACGGGTCGCGCCGTCTCCCG AATCCCGCGTGTGCCGGGCGGCGGTACCCACCGCTCCGGTCAGGGCGCCT TCGGCAACATGTGTCGTGGTGGTCGCATGTTCGCCCCCACAAAGATCTGG CGAAAGTGGCATCGAAAGGTCCCGCTCAACCAGAAGCGTTACGCTACTGC TTCGGCTCTTGCCGCATCCGCACTGCCTGCGCTCGTCATGGCCCGCGGAC ATGAGATTGATGACGTTCCCGAGGTTCCTCTTGTCGTCGACACCTCCGTC GAGGGCTTTACTAAGACCGCCAAGGCCGTCACCCTGCTCAAGTCGCTTGG CGCTTATGACGATGTCGAGCGCGTCATGGAGACCAAGAACCTGCGTGCCG GAAAGGGTAAGATGCGTAATCGTCGCTACAAGCAGCGCCGTGGCCCGCTT GTTGTCTATGATTCTGATGACGGCATCGTCAGAGCCTTCCGCAACCTTCC GGGCGTCGATCTGTGCAATGTCGCCCGCCTCAACCTTCTGCAGCTCGCCC CTGGTGGCCACGTTGGCCGCTTCATCATCTGGACTGAAGGCGCTGTCGCC AAGCTCGATCACATCTACGGCACCGGAGAGAGCGGTACCTCGGCGAAGAA GAGCTACATGCTTCCGAAGAATATCATCTCCAACTCTGACGTTGCCCGCA TCATCAACTCCGATGAGATCCAATCCGTTGTCAGACCTATTGCTGAACGA AAGATGCACATTCAACGCAAGAAGAATCCGCTTCGCAACAAGGAAATGCT TTTCAAGCTCAACCCGCACGCCCGCATCCGAAAGAAGGATCAGAAGCTCG AGAAGACTCCCTACGACAAGTCGCTCGGCGTCAAGTTCTACGAGAAAATG ATGGCCGACTAA back to topprotein sequence of Gchil2489.t1 >Gchil2489.t1 ID=Gchil2489.t1|Name=Gchil2489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=704bp
MCSTTRFAVGLELRRTERAAADATDAADAAVVTQHMHRAIPSTLFDAVVK YEASAALLCSQLRLARSEAQLLCDQAAVVAAHCAKCPDTHTPQCVLDASQ TSSPDVARFETMFLRASEHELRFAHLLHARLLHLAHHPSPDASDHEQSPL QTNHAAPLPERCGFSRRVPPDVSAVCNGVGIMKTAHGLYRTARSACSVRV RPNASFYFEAVVVDDTGVGGICIGVCGPAQSHTQILGADAASCGLHSTGQ LVHNFASFRALASQRFTRGDRVGVLVRRTACDTVHVGFTVNGARVGHTQS AQLAQEPRWWAAPNRAARAAASPQPDTESLPRSPFAQPAMATTAAARPVV SVLSAETGQPSRSVPMPTVFSAPIRNDIVQFVHTNMRKNSRQPYAVNRMS GMQSSAASWGTGRAVSRIPRVPGGGTHRSGQGAFGNMCRGGRMFAPTKIW RKWHRKVPLNQKRYATASALAASALPALVMARGHEIDDVPEVPLVVDTSV EGFTKTAKAVTLLKSLGAYDDVERVMETKNLRAGKGKMRNRRYKQRRGPL VVYDSDDGIVRAFRNLPGVDLCNVARLNLLQLAPGGHVGRFIIWTEGAVA KLDHIYGTGESGTSAKKSYMLPKNIISNSDVARIINSDEIQSVVRPIAER KMHIQRKKNPLRNKEMLFKLNPHARIRKKDQKLEKTPYDKSLGVKFYEKM MAD* back to topmRNA from alignment at tig00004400_pilon:1362640..1365958+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil2489.t1 ID=Gchil2489.t1|Name=Gchil2489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=3319bp|location=Sequence derived from alignment at tig00004400_pilon:1362640..1365958+ (Gracilaria chilensis NLEC103_M9 male) ATGTGCTCCACGACTCGCTTCGCAGTCGGTCTAGAGCTGCGGCGCACCGA
GCGcgccgccgcagacgccacagacgccgcagacgccgccgTAGTGACGC
AACACATGCATCGCGCCATCCCGTCCACGCTGTTCGACGCCGTCGTGAAA
TACGAAGCGTCCGCCGCCCTGCTGTGCTCCCAACTGCGTCTGGCGCGCAG
CGAGGCTCAATTACTCTGCGATCAGGCCGCCGTCGTTGCGGCCCACTGCG
CCAAGTGCCCCGACACACACACCCCACAATGCGTGCTTGACGCGTCGCAA
ACGTCATCACCCGACGTCGCCCGCTTTGAAACCATGTTTCTACGTGCCTC
CGAACATGAGCTACGTTTCGCCCATCTCTTACACGCCCGTCTGCTTCATT
TGGCGCATCACCCCTCTCCCGACGCTTCCGACCACGAGCAGTCGCCGTTG
CAAACCAATCACGCCGCGCCCCTGCCCGAGCGTTGCGGCTTTTCACGTCG
AGTACCGCCCGATGTGAGCGCCGTCTGCAACGGTGTGGGTATCATGAAGA
CCGCACACGGATTGTATCGAACCGCGCGCAGCGCATGTAGCGTGCGCGTG
CGTCCCAACGCAAGCTTCTACTTTGAGGCAGTCGTGGTGGACGACACAGG
CGTTGGTGGCATTTGCATCGGCGTATGTGGCCCCGCCCAAAGCCACACCC
AAATACTCGGCGCAGACGCCGCCAGCTGCGGGCTGCACAGCACCGGCCAG
TTGGTGCACAACTTTGCCTCGTTCCGTGCGTTGGCGTCTCAGCGTTTCAC
GCGCGGCGATCGCGTCGGTGTTTTAGTGAGACGTACCGCCTGTGACACCG
TTCACGTCGGCTTCACGGTGAACGGCGCGCGTGTGGGACACACTCAAAGT
GCGCAGCTGGCTCAGGAACCGCGCTGGTGGGCCGCTGTATGTATGTATCG
CAGCGGCAGTAAGGTCGTGTTGCAATGCTGCCAgcgcgactgggcgctgt
cgcctgcgcgcgtcgccgcgctcttcgactgcgcgccgcgctgcgtgcgc
gcgcTGTGTgccacggacggcgacaacggcaacggcgaccgcgaccgcgg
cgacgaagacgacctcggcggcgacgaagatgaccacggtggcgacgacg
CCCCGGTCTAGCCGTGGCGTCGCGCTTCGCCGCCTCGTTGCGCTTCGCCG
CCTCGTTGCGCTTCGCCGCCACCCTTGTTTCGCTTCGCCGCTTTCGCTCC
GCTTGTTTCGCTCGCTGCGCTTGCCTCGCGCGCCACGTGGTCGCGCTGGC
CACGCGTCGCCGCGCGTCGCCGCGCGTCATCGCGCTGCCTTCTTATACTG
CGCGTCGCGCGCCTTCCTCAACTGCAATCACTGCCCCCTTCGCGTAGCCT
AACCGAGCTGCGCGCGCCGCTGCCTCGCCGCAGCCCGAcgtaatcgtcgt
cgtagtcgtagtcgtagtcgtagtcgtagCCCGAGAAATACTCACCATGC
CAGTACTGTCCGCACGCCTTGGGTAGGCATATCGTGCGCCTCCGTCGCGC
ACACAACACCTGCCCCGCTTTCccgcccgccgcccgccgcggacgcgcgc
ctccgtcgcagtcgcccgccgccgcggctgcgcgcGTTCGCGACGCGGCG
CGACGAGGCATGGCCAATCGCGCCTCAGCATAACGCCGATACTCTCGCAC
GTGGCGCTGCAACGCGCCGTTTGCAGCGACCAAATCGAACCGGCGGAGAG
TGACTTGGTCAGGGGGTTGTGAAAAAGCACCCGTGTTCGTGCCCCTCGTG
GCCTTCACGGGCCGTCTATCGCCCCTACATTGTTTCTACACGACTCGCTT
CCTCTCGCCTTCATCCCCATCTGGCTACATGCGCTGTACATGCTTCCTGC
TGTAGAACATATGTGTAAAAAACCCTTCGTAACTTGGATGCTCCAGCGCG
CCTTTCCAGCCCAAAACCCCCCTCGTCGTAGATCATCGCCCTCTTCGTTG
TATCAAAACCTCTGTAAGCCATTCGCTTTTCTAATTTACTATAAATTCTA
ACAATGCTGTAAGCCTACACGCCGAAAGCGCCGTCGACGGCGACACCCAC
CGCGCGTCGCACTTTGCCATCGTCGCCAACGAGGCCGCCGGTGACTATTG
CTTCATCGTCACCTCATCCAACCTCCTCAGCGCAGACCGAAAGCCTCCCT
CGATCCCCGTTCGCGCAACCTGCCATGGCCACCACCGCCGCCGCGCGCCC
AGTCGTCTCCGTCCTCAGCGCGGAGACGGGGCAACCCTCACGTTCCGTCC
CCATGCCCACCGTCTTCTCCGCCCCGATCCGCAACGACATCGTGCAGTTC
GTCCACACCAACATGCGAAAGAACAGTCGTCAACCCTACGCCGTCAACAG
AATGTCCGGGATGCAGTCCTCCGCCGCCTCTTGGGGCACGGGTCGCGCCG
TCTCCCGAATCCCGCGTGTGCCGGGCGGCGGTACCCACCGCTCCGGTCAG
GGCGCCTTCGGCAACATGTGTCGTGGTGGTCGCATGTTCGCCCCCACAAA
GATCTGGCGAAAGTGGCATCGAAAGGTCCCGCTCAACCAGAAGCGTTACG
CTACTGCTTCGGCTCTTGCCGCATCCGCACTGCCTGCGCTCGTCATGGCC
CGCGGACATGAGATTGATGACGTTCCCGAGGTTCCTCTTGTCGTCGACAC
CTCCGTCGAGGGCTTTACTAAGACCGCCAAGGCCGTCACCCTGCTCAAGT
CGCTTGGCGCTTATGACGATGTCGAGCGCGTCATGGAGACCAAGAACCTG
CGTGCCGGAAAGGGTAAGATGCGTAATCGTCGCTACAAGCAGCGCCGTGG
CCCGCTTGTTGTCTATGATTCTGATGACGGCATCGTCAGAGCCTTCCGCA
ACCTTCCGGGCGTCGATCTGTGCAATGTCGCCCGCCTCAACCTTCTGCAG
CTCGCCCCTGGTGGCCACGTTGGCCGCTTCATCATCTGGACTGAAGGCGC
TGTCGCCAAGCTCGATCACATCTACGGCACCGGAGAGAGCGGTACCTCGG
CGAAGAAGAGCTACATGCTTCCGAAGAATATCATCTCCAACTCTGACGTT
GCCCGCATCATCAACTCCGATGAGATCCAATCCGTTGTCAGACCTATTGC
TGAACGAAAGATGCACATTCAACGCAAGAAGAATCCGCTTCGCAACAAGG
AAATGCTTTTCAAGCTCAACCCGCACGCCCGCATCCGAAAGAAGGATCAG
AAGCTCGAGAAGACTCCCTACGACAAGTCGCTCGGCGTCAAGTTCTACGA
GAAAATGATGGCCGACTAA back to topCoding sequence (CDS) from alignment at tig00004400_pilon:1362640..1365958+ >Gchil2489.t1 ID=Gchil2489.t1|Name=Gchil2489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2112bp|location=Sequence derived from alignment at tig00004400_pilon:1362640..1365958+ (Gracilaria chilensis NLEC103_M9 male) ATGTGCTCCACGACTCGCTTCGCAGTCGGTCTAGAGCTGCGGCGCACCGA GCGcgccgccgcagacgccacagacgccgcagacgccgccgTAGTGACGC AACACATGCATCGCGCCATCCCGTCCACGCTGTTCGACGCCGTCGTGAAA TACGAAGCGTCCGCCGCCCTGCTGTGCTCCCAACTGCGTCTGGCGCGCAG CGAGGCTCAATTACTCTGCGATCAGGCCGCCGTCGTTGCGGCCCACTGCG CCAAGTGCCCCGACACACACACCCCACAATGCGTGCTTGACGCGTCGCAA ACGTCATCACCCGACGTCGCCCGCTTTGAAACCATGTTTCTACGTGCCTC CGAACATGAGCTACGTTTCGCCCATCTCTTACACGCCCGTCTGCTTCATT TGGCGCATCACCCCTCTCCCGACGCTTCCGACCACGAGCAGTCGCCGTTG CAAACCAATCACGCCGCGCCCCTGCCCGAGCGTTGCGGCTTTTCACGTCG AGTACCGCCCGATGTGAGCGCCGTCTGCAACGGTGTGGGTATCATGAAGA CCGCACACGGATTGTATCGAACCGCGCGCAGCGCATGTAGCGTGCGCGTG CGTCCCAACGCAAGCTTCTACTTTGAGGCAGTCGTGGTGGACGACACAGG CGTTGGTGGCATTTGCATCGGCGTATGTGGCCCCGCCCAAAGCCACACCC AAATACTCGGCGCAGACGCCGCCAGCTGCGGGCTGCACAGCACCGGCCAG TTGGTGCACAACTTTGCCTCGTTCCGTGCGTTGGCGTCTCAGCGTTTCAC GCGCGGCGATCGCGTCGGTGTTTTAGTGAGACGTACCGCCTGTGACACCG TTCACGTCGGCTTCACGGTGAACGGCGCGCGTGTGGGACACACTCAAAGT GCGCAGCTGGCTCAGGAACCGCGCTGGTGGGCCGCTCCTAACCGAGCTGC GCGCGCCGCTGCCTCGCCGCAGCCCGAcACCGAAAGCCTCCCTCGATCCC CGTTCGCGCAACCTGCCATGGCCACCACCGCCGCCGCGCGCCCAGTCGTC TCCGTCCTCAGCGCGGAGACGGGGCAACCCTCACGTTCCGTCCCCATGCC CACCGTCTTCTCCGCCCCGATCCGCAACGACATCGTGCAGTTCGTCCACA CCAACATGCGAAAGAACAGTCGTCAACCCTACGCCGTCAACAGAATGTCC GGGATGCAGTCCTCCGCCGCCTCTTGGGGCACGGGTCGCGCCGTCTCCCG AATCCCGCGTGTGCCGGGCGGCGGTACCCACCGCTCCGGTCAGGGCGCCT TCGGCAACATGTGTCGTGGTGGTCGCATGTTCGCCCCCACAAAGATCTGG CGAAAGTGGCATCGAAAGGTCCCGCTCAACCAGAAGCGTTACGCTACTGC TTCGGCTCTTGCCGCATCCGCACTGCCTGCGCTCGTCATGGCCCGCGGAC ATGAGATTGATGACGTTCCCGAGGTTCCTCTTGTCGTCGACACCTCCGTC GAGGGCTTTACTAAGACCGCCAAGGCCGTCACCCTGCTCAAGTCGCTTGG CGCTTATGACGATGTCGAGCGCGTCATGGAGACCAAGAACCTGCGTGCCG GAAAGGGTAAGATGCGTAATCGTCGCTACAAGCAGCGCCGTGGCCCGCTT GTTGTCTATGATTCTGATGACGGCATCGTCAGAGCCTTCCGCAACCTTCC GGGCGTCGATCTGTGCAATGTCGCCCGCCTCAACCTTCTGCAGCTCGCCC CTGGTGGCCACGTTGGCCGCTTCATCATCTGGACTGAAGGCGCTGTCGCC AAGCTCGATCACATCTACGGCACCGGAGAGAGCGGTACCTCGGCGAAGAA GAGCTACATGCTTCCGAAGAATATCATCTCCAACTCTGACGTTGCCCGCA TCATCAACTCCGATGAGATCCAATCCGTTGTCAGACCTATTGCTGAACGA AAGATGCACATTCAACGCAAGAAGAATCCGCTTCGCAACAAGGAAATGCT TTTCAAGCTCAACCCGCACGCCCGCATCCGAAAGAAGGATCAGAAGCTCG AGAAGACTCCCTACGACAAGTCGCTCGGCGTCAAGTTCTACGAGAAAATG ATGGCCGACTAA back to top
|