Gchil2485.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2485.t1
Unique NameGchil2485.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1313437..1314873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2485Gchil2485Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1313437..1314873 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2485.t1.stop1Gchil2485.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1313437..1313439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2485.t1.CDS1Gchil2485.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1313437..1314873 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2485.t1.exon1Gchil2485.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1313437..1314873 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2485.t1.start1Gchil2485.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1314871..1314873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2485.t1Gchil2485.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1313437..1314873 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2485.t1 ID=Gchil2485.t1|Name=Gchil2485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=479bp
MFSNNPNPTNNITATDEVSKNKSLDDSDEVGVTCVSHKSFRNLLDATYDS
HVELIRRGIPSHTVKHFFSEALRYLTRDECFCSGQRSRIASVCIEAAFYD
GMDYQIASRLYFIIENDRLERIQDQKFPLYHKIASNPLPNISSKEKDAIL
LAKKSTVESILLFEDDPGRGGLIDPVFPRSKELLLADEGDDSKCEMFRND
SVGLPVGHYIAYTVGLATHILLSDSEDKEAEKLLREAVSIAYVRSQCERK
EGKPSLIPFDLFLDLYEYTEPILKDATYSTASAFPPEGFHGVDIPSAVYF
SLIIRVAYFFFEEDITFLSSIDSHGRPVVLQNVKNSVYMRRVTRRITEEI
SVVFLQKAYNVAKALLKREGVDKGYQGSNSINNGVRVRCPSGWQYVPRVA
PVSNVMENCCSVECHVLENVIYSYIVQSEMCCKACNYLSCQGTAIAMKGK
REVIPRIDVSGLRPAADNQSHGVTMVSI*
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spliced messenger RNA

>Gchil2485.t1 ID=Gchil2485.t1|Name=Gchil2485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00004400_pilon:1313437..1314873- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCGAACAATCCCAATCCGACAAATAACATCACTGCAACCGATGA
GGTTTCTAAGAATAAGTCCCTTGACGATTCGGATGAAGTCGGGGTTACAT
GTGTATCCCACAAATCCTTCCGAAATCTTCTCGATGCAACATATGACTCC
CATGTTGAACTGATTCGTCGTGGCATACCGTCACATACAGTCAAGCATTT
TTTCAGCGAAGCTCTTAGATATCTCACCCGAGATGAGTGTTTTTGTTCGG
GCCAGCGCTCGAGAATTGCCAGTGTTTGCATTGAGGCCGCATTCTACGAT
GGTATGGACTACCAGATTGCATCGCGACTGTACTTCATTATTGAAAATGA
CAGACTGGAGCGCATTCAAGATCAAAAGTTTCCGCTATACCACAAGATTG
CATCGAATCCGTTACCGAATATCTCTTCGAAGGAAAAAGATGCTATTCTA
CTCGCAAAGAAGAGCACCGTCGAAAGCATTCTTCTTTTCGAAGACGACCC
AGGTCGCGGCGGCTTAATAGACCCTGTGTTCCCTCGAAGCAAGGAGCTTC
TCCTTGCTGACGAGGGGGATGACTCTAAATGTGAAATGTTCAGAAACGAC
TCTGTAGGGCTTCCAGTTGGTCATTATATAGCGTACACCGTGGGACTGGC
CACTCACATTCTTCTCAGTGATTCCGAAGACAAAGAGGCTGAAAAGCTCC
TTCGCGAAGCAGTTTCTATCGCCTATGTTCGATCTCAATGTGAAAGAAAA
GAAGGGAAACCAAGTCTCATTCCATTTGACCTATTTCTGGATCTATATGA
ATATACCGAACCTATATTGAAGGATGCTACATATTCCACAGCATCCGCAT
TTCCTCCAGAAGGTTTTCATGGTGTAGATATTCCATCAGCTGTGTATTTC
TCGCTTATTATCCGTGTTGCTTACTTTTTCTTCGAAGAAGACATAACGTT
TTTATCGTCTATTGACAGTCATGGCAGGCCAGTGGTTCTACAAAATGTTA
AAAACTCTGTGTATATGAGAAGGGTAACAAGGCGAATAACAGAGGAGATT
TCCGTAGTCTTCCTACAAAAAGCCTACAATGTGGCGAAGGCTCTTTTGAA
GAGGGAAGGTGTGGATAAAGGATACCAAGGCAGCAACTCTATAAATAATG
GCGTTCGAGTAAGGTGCCCTTCTGGATGGCAGTATGTCCCGCGAGTAGCA
CCGGTCTCAAATGTTATGGAAAACTGCTGCTCAGTGGAGTGCCATGTTTT
AGAAAACGTGATTTACTCCTACATTGTGCAAAGCGAAATGTGTTGTAAGG
CTTGCAATTATTTGAGTTGCCAAGGTACAGCTATCGCTATGAAAGGGAAA
AGAGAAGTAATTCCAAGAATCGATGTTTCTGGTCTACGGCCTGCTGCCGA
CAACCAGTCTCACGGCGTTACGATGGTTTCCATTTAG
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protein sequence of Gchil2485.t1

>Gchil2485.t1 ID=Gchil2485.t1|Name=Gchil2485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=479bp
MFSNNPNPTNNITATDEVSKNKSLDDSDEVGVTCVSHKSFRNLLDATYDS
HVELIRRGIPSHTVKHFFSEALRYLTRDECFCSGQRSRIASVCIEAAFYD
GMDYQIASRLYFIIENDRLERIQDQKFPLYHKIASNPLPNISSKEKDAIL
LAKKSTVESILLFEDDPGRGGLIDPVFPRSKELLLADEGDDSKCEMFRND
SVGLPVGHYIAYTVGLATHILLSDSEDKEAEKLLREAVSIAYVRSQCERK
EGKPSLIPFDLFLDLYEYTEPILKDATYSTASAFPPEGFHGVDIPSAVYF
SLIIRVAYFFFEEDITFLSSIDSHGRPVVLQNVKNSVYMRRVTRRITEEI
SVVFLQKAYNVAKALLKREGVDKGYQGSNSINNGVRVRCPSGWQYVPRVA
PVSNVMENCCSVECHVLENVIYSYIVQSEMCCKACNYLSCQGTAIAMKGK
REVIPRIDVSGLRPAADNQSHGVTMVSI*
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mRNA from alignment at tig00004400_pilon:1313437..1314873-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2485.t1 ID=Gchil2485.t1|Name=Gchil2485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00004400_pilon:1313437..1314873- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCGAACAATCCCAATCCGACAAATAACATCACTGCAACCGATGA
GGTTTCTAAGAATAAGTCCCTTGACGATTCGGATGAAGTCGGGGTTACAT
GTGTATCCCACAAATCCTTCCGAAATCTTCTCGATGCAACATATGACTCC
CATGTTGAACTGATTCGTCGTGGCATACCGTCACATACAGTCAAGCATTT
TTTCAGCGAAGCTCTTAGATATCTCACCCGAGATGAGTGTTTTTGTTCGG
GCCAGCGCTCGAGAATTGCCAGTGTTTGCATTGAGGCCGCATTCTACGAT
GGTATGGACTACCAGATTGCATCGCGACTGTACTTCATTATTGAAAATGA
CAGACTGGAGCGCATTCAAGATCAAAAGTTTCCGCTATACCACAAGATTG
CATCGAATCCGTTACCGAATATCTCTTCGAAGGAAAAAGATGCTATTCTA
CTCGCAAAGAAGAGCACCGTCGAAAGCATTCTTCTTTTCGAAGACGACCC
AGGTCGCGGCGGCTTAATAGACCCTGTGTTCCCTCGAAGCAAGGAGCTTC
TCCTTGCTGACGAGGGGGATGACTCTAAATGTGAAATGTTCAGAAACGAC
TCTGTAGGGCTTCCAGTTGGTCATTATATAGCGTACACCGTGGGACTGGC
CACTCACATTCTTCTCAGTGATTCCGAAGACAAAGAGGCTGAAAAGCTCC
TTCGCGAAGCAGTTTCTATCGCCTATGTTCGATCTCAATGTGAAAGAAAA
GAAGGGAAACCAAGTCTCATTCCATTTGACCTATTTCTGGATCTATATGA
ATATACCGAACCTATATTGAAGGATGCTACATATTCCACAGCATCCGCAT
TTCCTCCAGAAGGTTTTCATGGTGTAGATATTCCATCAGCTGTGTATTTC
TCGCTTATTATCCGTGTTGCTTACTTTTTCTTCGAAGAAGACATAACGTT
TTTATCGTCTATTGACAGTCATGGCAGGCCAGTGGTTCTACAAAATGTTA
AAAACTCTGTGTATATGAGAAGGGTAACAAGGCGAATAACAGAGGAGATT
TCCGTAGTCTTCCTACAAAAAGCCTACAATGTGGCGAAGGCTCTTTTGAA
GAGGGAAGGTGTGGATAAAGGATACCAAGGCAGCAACTCTATAAATAATG
GCGTTCGAGTAAGGTGCCCTTCTGGATGGCAGTATGTCCCGCGAGTAGCA
CCGGTCTCAAATGTTATGGAAAACTGCTGCTCAGTGGAGTGCCATGTTTT
AGAAAACGTGATTTACTCCTACATTGTGCAAAGCGAAATGTGTTGTAAGG
CTTGCAATTATTTGAGTTGCCAAGGTACAGCTATCGCTATGAAAGGGAAA
AGAGAAGTAATTCCAAGAATCGATGTTTCTGGTCTACGGCCTGCTGCCGA
CAACCAGTCTCACGGCGTTACGATGGTTTCCATTTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1313437..1314873-

>Gchil2485.t1 ID=Gchil2485.t1|Name=Gchil2485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00004400_pilon:1313437..1314873- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCGAACAATCCCAATCCGACAAATAACATCACTGCAACCGATGA
GGTTTCTAAGAATAAGTCCCTTGACGATTCGGATGAAGTCGGGGTTACAT
GTGTATCCCACAAATCCTTCCGAAATCTTCTCGATGCAACATATGACTCC
CATGTTGAACTGATTCGTCGTGGCATACCGTCACATACAGTCAAGCATTT
TTTCAGCGAAGCTCTTAGATATCTCACCCGAGATGAGTGTTTTTGTTCGG
GCCAGCGCTCGAGAATTGCCAGTGTTTGCATTGAGGCCGCATTCTACGAT
GGTATGGACTACCAGATTGCATCGCGACTGTACTTCATTATTGAAAATGA
CAGACTGGAGCGCATTCAAGATCAAAAGTTTCCGCTATACCACAAGATTG
CATCGAATCCGTTACCGAATATCTCTTCGAAGGAAAAAGATGCTATTCTA
CTCGCAAAGAAGAGCACCGTCGAAAGCATTCTTCTTTTCGAAGACGACCC
AGGTCGCGGCGGCTTAATAGACCCTGTGTTCCCTCGAAGCAAGGAGCTTC
TCCTTGCTGACGAGGGGGATGACTCTAAATGTGAAATGTTCAGAAACGAC
TCTGTAGGGCTTCCAGTTGGTCATTATATAGCGTACACCGTGGGACTGGC
CACTCACATTCTTCTCAGTGATTCCGAAGACAAAGAGGCTGAAAAGCTCC
TTCGCGAAGCAGTTTCTATCGCCTATGTTCGATCTCAATGTGAAAGAAAA
GAAGGGAAACCAAGTCTCATTCCATTTGACCTATTTCTGGATCTATATGA
ATATACCGAACCTATATTGAAGGATGCTACATATTCCACAGCATCCGCAT
TTCCTCCAGAAGGTTTTCATGGTGTAGATATTCCATCAGCTGTGTATTTC
TCGCTTATTATCCGTGTTGCTTACTTTTTCTTCGAAGAAGACATAACGTT
TTTATCGTCTATTGACAGTCATGGCAGGCCAGTGGTTCTACAAAATGTTA
AAAACTCTGTGTATATGAGAAGGGTAACAAGGCGAATAACAGAGGAGATT
TCCGTAGTCTTCCTACAAAAAGCCTACAATGTGGCGAAGGCTCTTTTGAA
GAGGGAAGGTGTGGATAAAGGATACCAAGGCAGCAACTCTATAAATAATG
GCGTTCGAGTAAGGTGCCCTTCTGGATGGCAGTATGTCCCGCGAGTAGCA
CCGGTCTCAAATGTTATGGAAAACTGCTGCTCAGTGGAGTGCCATGTTTT
AGAAAACGTGATTTACTCCTACATTGTGCAAAGCGAAATGTGTTGTAAGG
CTTGCAATTATTTGAGTTGCCAAGGTACAGCTATCGCTATGAAAGGGAAA
AGAGAAGTAATTCCAAGAATCGATGTTTCTGGTCTACGGCCTGCTGCCGA
CAACCAGTCTCACGGCGTTACGATGGTTTCCATTTAG
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