Gchil2474.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2474.t1
Unique NameGchil2474.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1263314..1264003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704827.1
PFAMsHis_Phos_1,IPK
Max annot lvl2759|Eukaryota
KEGG koko:K15206
Evalue4.16e-36
EggNOG OGsCOG0406@1|root,KOG3734@2759|Eukaryota
Descriptioncollagen-activated tyrosine kinase receptor signaling pathway
COG categoryG
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2474Gchil2474Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1263314..1264003 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2474.t1.stop1Gchil2474.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1263314..1263316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2474.t1.CDS1Gchil2474.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1263314..1264003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2474.t1.exon1Gchil2474.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1263314..1264003 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2474.t1.start1Gchil2474.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1264001..1264003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2474.t1Gchil2474.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1263314..1264003 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2474.t1 ID=Gchil2474.t1|Name=Gchil2474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MPPTLYLARHGERLDFVDPKWRDTAARPDDAPLTQLGFAQAGKLGELLSA
KQVTKIYTSPFLRCIQTATAVQNQLSPKAELNVEPGLCEWLNGIWYSASE
KGPIWLQPHAVFEQFPGVNRLYDPLFGYDWNFRGFPESESELLHRCDQTI
TRITSANRDLPGNILLVGHGSSIPAIRLRILPNVPTPRLGYCGLTECIPT
AQSLAYTLGAHNNDQSFLRHLHELREIND*
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spliced messenger RNA

>Gchil2474.t1 ID=Gchil2474.t1|Name=Gchil2474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00004400_pilon:1263314..1264003- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCACGCTGTACCTCGCCCGCCATGGAGAACGCCTCGACTTTGT
CGATCCCAAGTGGCGAGACACCGCCGCCCGCCCGGACGACGCGCCGCTCA
CGCAGTTGGGATTCGCCCAAGCCGGCAAGCTGGGCGAGCTGCTTTCCGCC
AAACAGGTTACCAAAATCTACACCAGCCCGTTTCTGCGCTGCATTCAGAC
TGCAACCGCTGTCCAAAACCAGCTCTCGCCAAAGGCGGAGCTCAACGTGG
AGCCCGGTCTTTGCGAATGGTTGAATGGCATCTGGTATTCCGCCTCGGAG
AAGGGCCCCATCTGGCTGCAACCGCACGCCGTTTTTGAGCAATTTCCGGG
CGTCAATCGTTTGTACGACCCTTTGTTTGGGTACGACTGGAACTTTCGCG
GATTTCCTGAGAGTGAGTCTGAGTTACTTCATCGCTGCGACCAGACCATC
ACCAGGATTACTTCAGCGAATCGTGACCTACCTGGAAACATTCTATTGGT
CGGCCATGGATCAAGTATTCCCGCCATACGCTTGCGAATTCTGCCCAACG
TCCCAACCCCTCGTCTGGGATACTGCGGACTCACGGAATGCATCCCGACT
GCACAGAGTCTTGCCTATACTCTTGGAGCTCATAACAACGATCAGTCCTT
TCTGCGACACTTGCATGAACTACGTGAAATAAATGACTAA
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protein sequence of Gchil2474.t1

>Gchil2474.t1 ID=Gchil2474.t1|Name=Gchil2474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MPPTLYLARHGERLDFVDPKWRDTAARPDDAPLTQLGFAQAGKLGELLSA
KQVTKIYTSPFLRCIQTATAVQNQLSPKAELNVEPGLCEWLNGIWYSASE
KGPIWLQPHAVFEQFPGVNRLYDPLFGYDWNFRGFPESESELLHRCDQTI
TRITSANRDLPGNILLVGHGSSIPAIRLRILPNVPTPRLGYCGLTECIPT
AQSLAYTLGAHNNDQSFLRHLHELREIND*
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mRNA from alignment at tig00004400_pilon:1263314..1264003-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2474.t1 ID=Gchil2474.t1|Name=Gchil2474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00004400_pilon:1263314..1264003- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCACGCTGTACCTCGCCCGCCATGGAGAACGCCTCGACTTTGT
CGATCCCAAGTGGCGAGACACCGCCGCCCGCCCGGACGACGCGCCGCTCA
CGCAGTTGGGATTCGCCCAAGCCGGCAAGCTGGGCGAGCTGCTTTCCGCC
AAACAGGTTACCAAAATCTACACCAGCCCGTTTCTGCGCTGCATTCAGAC
TGCAACCGCTGTCCAAAACCAGCTCTCGCCAAAGGCGGAGCTCAACGTGG
AGCCCGGTCTTTGCGAATGGTTGAATGGCATCTGGTATTCCGCCTCGGAG
AAGGGCCCCATCTGGCTGCAACCGCACGCCGTTTTTGAGCAATTTCCGGG
CGTCAATCGTTTGTACGACCCTTTGTTTGGGTACGACTGGAACTTTCGCG
GATTTCCTGAGAGTGAGTCTGAGTTACTTCATCGCTGCGACCAGACCATC
ACCAGGATTACTTCAGCGAATCGTGACCTACCTGGAAACATTCTATTGGT
CGGCCATGGATCAAGTATTCCCGCCATACGCTTGCGAATTCTGCCCAACG
TCCCAACCCCTCGTCTGGGATACTGCGGACTCACGGAATGCATCCCGACT
GCACAGAGTCTTGCCTATACTCTTGGAGCTCATAACAACGATCAGTCCTT
TCTGCGACACTTGCATGAACTACGTGAAATAAATGACTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1263314..1264003-

>Gchil2474.t1 ID=Gchil2474.t1|Name=Gchil2474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00004400_pilon:1263314..1264003- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCACGCTGTACCTCGCCCGCCATGGAGAACGCCTCGACTTTGT
CGATCCCAAGTGGCGAGACACCGCCGCCCGCCCGGACGACGCGCCGCTCA
CGCAGTTGGGATTCGCCCAAGCCGGCAAGCTGGGCGAGCTGCTTTCCGCC
AAACAGGTTACCAAAATCTACACCAGCCCGTTTCTGCGCTGCATTCAGAC
TGCAACCGCTGTCCAAAACCAGCTCTCGCCAAAGGCGGAGCTCAACGTGG
AGCCCGGTCTTTGCGAATGGTTGAATGGCATCTGGTATTCCGCCTCGGAG
AAGGGCCCCATCTGGCTGCAACCGCACGCCGTTTTTGAGCAATTTCCGGG
CGTCAATCGTTTGTACGACCCTTTGTTTGGGTACGACTGGAACTTTCGCG
GATTTCCTGAGAGTGAGTCTGAGTTACTTCATCGCTGCGACCAGACCATC
ACCAGGATTACTTCAGCGAATCGTGACCTACCTGGAAACATTCTATTGGT
CGGCCATGGATCAAGTATTCCCGCCATACGCTTGCGAATTCTGCCCAACG
TCCCAACCCCTCGTCTGGGATACTGCGGACTCACGGAATGCATCCCGACT
GCACAGAGTCTTGCCTATACTCTTGGAGCTCATAACAACGATCAGTCCTT
TCTGCGACACTTGCATGAACTACGTGAAATAAATGACTAA
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