Gchil2471.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2471.t1
Unique NameGchil2471.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1232240..1233439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc09g098180.2.1
PFAMsPirin,Pirin_C
Max annot lvl35493|Streptophyta
KEGG koko:K06911
GOsGO:0001101,GO:0003674,GO:0004857,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009637,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009785,GO:0009892,GO:0009987,GO:0010033,GO:0010466,GO:0010605,GO:0016020,GO:0019222,GO:0023052,GO:0030162,GO:0030234,GO:0030414,GO:0030522,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0032870,GO:0033993,GO:0042221,GO:0042742,GO:0043086,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0051716,GO:0052547,GO:0060255,GO:0061134,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071944,GO:0080090,GO:0097305,GO:0097306,GO:0098542,GO:0098772,GO:0104004,GO:1901700,GO:1901701
Evalue1.37e-105
EggNOG OGsCOG1741@1|root,2QQ5A@2759|Eukaryota,37REZ@33090|Viridiplantae,3G8XY@35493|Streptophyta,44E2W@71274|asterids
DescriptionPirin
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2471Gchil2471Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1232240..1233439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2471.t1Gchil2471.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1232240..1233439 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2471.t1.stop1Gchil2471.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1232240..1232242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2471.t1.CDS1Gchil2471.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1232240..1232667 -
Gchil2471.t1.CDS2Gchil2471.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1232760..1233216 -
Gchil2471.t1.CDS3Gchil2471.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1233323..1233439 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2471.t1.exon1Gchil2471.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1232240..1232667 -
Gchil2471.t1.exon2Gchil2471.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1232760..1233216 -
Gchil2471.t1.exon3Gchil2471.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1233323..1233439 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2471.t1.intron1Gchil2471.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1232668..1232759 -
Gchil2471.t1.intron2Gchil2471.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1233217..1233322 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2471.t1.start1Gchil2471.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1233437..1233439 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2471.t1 ID=Gchil2471.t1|Name=Gchil2471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=334bp
MGLRRRNTQQSTSKQSSPERRTHRASQFLYFVSFSLLILLLARSNLEQTV
LKRFTKPATKMTVFRDVQRIVIAREQSEGVGARVRRSIGSAELRNFDPFL
LLDEFNVTKPAGFPDHPHRGMQTVTYMLEGAFRHEDNKGHAGTIGVGDLQ
WMTAGRGIVHSEMPATNGSNIGLQLWVNLAAKEKMTKPQYQELLAEDVPL
AKNEDGSIEVKVIAGKCFDVESKVFTQTPTLYWDVRMLKSATFEEQIPEH
YNAFLYVLEGKVTTGKKDVDGEHGSCIVFGPGEGVQVKSDDEARFVVLAG
QPLKEPIVQHGPFVMNTKEQIMQAFRDYSAGKF*
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spliced messenger RNA

>Gchil2471.t1 ID=Gchil2471.t1|Name=Gchil2471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00004400_pilon:1232240..1233439- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTCCGTCGAAGAAATACGCAACAGTCTACGTCGAAGCAATCCTC
CCCCGAGCGACGGACACACCGTGCCTCTCAATTTTTGTATTTCGTGTCCT
TTTCTCTCCTCATACTGTTACTCGCCCGTTCGAATCTAGAGCAAACAGTG
TTGAAGCGATTTACAAAGCCAGCCACGAAGATGACTGTTTTTCGTGACGT
TCAAAGAATTGTCATTGCGCGTGAGCAATCAGAGGGTGTCGGCGCCCGAG
TCCGAAGAAGCATCGGATCAGCTGAGCTTCGTAATTTTGATCCTTTCCTT
CTGCTCGACGAGTTCAATGTAACGAAGCCAGCTGGATTCCCGGACCATCC
TCACAGAGGAATGCAGACCGTAACTTATATGCTCGAAGGCGCCTTCCGGC
ACGAGGATAATAAAGGTCATGCAGGAACCATTGGAGTTGGTGATTTGCAA
TGGATGACCGCTGGTCGGGGTATTGTCCACAGTGAAATGCCCGCCACCAA
TGGCAGCAATATAGGTTTGCAGTTGTGGGTAAATCTTGCTGCCAAGGAAA
AGATGACGAAGCCACAGTATCAAGAGCTCTTGGCTGAAGACGTGCCATTG
GCCAAGAATGAAGATGGCTCCATCGAGGTAAAGGTTATTGCCGGCAAGTG
TTTCGACGTTGAAAGCAAAGTATTCACACAAACTCCAACCTTGTACTGGG
ATGTGCGAATGTTGAAAAGCGCCACTTTTGAAGAACAAATACCGGAGCAT
TACAACGCCTTTCTTTACGTATTGGAAGGCAAAGTGACTACGGGGAAAAA
GGATGTTGACGGTGAGCACGGGTCATGCATTGTATTCGGTCCCGGGGAGG
GCGTACAAGTCAAATCAGACGACGAGGCTAGATTTGTTGTGCTCGCTGGA
CAACCTTTGAAAGAACCCATAGTGCAACATGGTCCATTTGTAATGAACAC
GAAGGAACAAATCATGCAAGCCTTCCGAGACTATTCCGCTGGAAAGTTTT
AA
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protein sequence of Gchil2471.t1

>Gchil2471.t1 ID=Gchil2471.t1|Name=Gchil2471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=334bp
MGLRRRNTQQSTSKQSSPERRTHRASQFLYFVSFSLLILLLARSNLEQTV
LKRFTKPATKMTVFRDVQRIVIAREQSEGVGARVRRSIGSAELRNFDPFL
LLDEFNVTKPAGFPDHPHRGMQTVTYMLEGAFRHEDNKGHAGTIGVGDLQ
WMTAGRGIVHSEMPATNGSNIGLQLWVNLAAKEKMTKPQYQELLAEDVPL
AKNEDGSIEVKVIAGKCFDVESKVFTQTPTLYWDVRMLKSATFEEQIPEH
YNAFLYVLEGKVTTGKKDVDGEHGSCIVFGPGEGVQVKSDDEARFVVLAG
QPLKEPIVQHGPFVMNTKEQIMQAFRDYSAGKF*
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mRNA from alignment at tig00004400_pilon:1232240..1233439-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2471.t1 ID=Gchil2471.t1|Name=Gchil2471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00004400_pilon:1232240..1233439- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACTCCGTCGAAGAAATACGCAACAGTCTACGTCGAAGCAATCCTC
CCCCGAGCGACGGACACACCGTGCCTCTCAATTTTTGTATTTCGTGTCCT
TTTCTCTCCTCATACTGGTAAGCGTACGCACGAAGTGTTTGTAAAAGACG
AGTCCTGTTTGAAGCCAAAGAGCTTCCAATGTCTTCAGCATTTGTAACTC
ATACAGTTCCTTTCCGTTCCAAGTTACTCGCCCGTTCGAATCTAGAGCAA
ACAGTGTTGAAGCGATTTACAAAGCCAGCCACGAAGATGACTGTTTTTCG
TGACGTTCAAAGAATTGTCATTGCGCGTGAGCAATCAGAGGGTGTCGGCG
CCCGAGTCCGAAGAAGCATCGGATCAGCTGAGCTTCGTAATTTTGATCCT
TTCCTTCTGCTCGACGAGTTCAATGTAACGAAGCCAGCTGGATTCCCGGA
CCATCCTCACAGAGGAATGCAGACCGTAACTTATATGCTCGAAGGCGCCT
TCCGGCACGAGGATAATAAAGGTCATGCAGGAACCATTGGAGTTGGTGAT
TTGCAATGGATGACCGCTGGTCGGGGTATTGTCCACAGTGAAATGCCCGC
CACCAATGGCAGCAATATAGGTTTGCAGTTGTGGGTAAATCTTGCTGCCA
AGGAAAAGATGACGAAGCCACAGTATCAAGGTGAGTAATTTTGCCCCTTC
TCCGCTTCCACTGCGTGCTAGTGAACATATGATCGATTTTTAACATTTAC
TCTTGTCTCATGACTGTTACAGAGCTCTTGGCTGAAGACGTGCCATTGGC
CAAGAATGAAGATGGCTCCATCGAGGTAAAGGTTATTGCCGGCAAGTGTT
TCGACGTTGAAAGCAAAGTATTCACACAAACTCCAACCTTGTACTGGGAT
GTGCGAATGTTGAAAAGCGCCACTTTTGAAGAACAAATACCGGAGCATTA
CAACGCCTTTCTTTACGTATTGGAAGGCAAAGTGACTACGGGGAAAAAGG
ATGTTGACGGTGAGCACGGGTCATGCATTGTATTCGGTCCCGGGGAGGGC
GTACAAGTCAAATCAGACGACGAGGCTAGATTTGTTGTGCTCGCTGGACA
ACCTTTGAAAGAACCCATAGTGCAACATGGTCCATTTGTAATGAACACGA
AGGAACAAATCATGCAAGCCTTCCGAGACTATTCCGCTGGAAAGTTTTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1232240..1233439-

>Gchil2471.t1 ID=Gchil2471.t1|Name=Gchil2471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00004400_pilon:1232240..1233439- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACTCCGTCGAAGAAATACGCAACAGTCTACGTCGAAGCAATCCTC
CCCCGAGCGACGGACACACCGTGCCTCTCAATTTTTGTATTTCGTGTCCT
TTTCTCTCCTCATACTGTTACTCGCCCGTTCGAATCTAGAGCAAACAGTG
TTGAAGCGATTTACAAAGCCAGCCACGAAGATGACTGTTTTTCGTGACGT
TCAAAGAATTGTCATTGCGCGTGAGCAATCAGAGGGTGTCGGCGCCCGAG
TCCGAAGAAGCATCGGATCAGCTGAGCTTCGTAATTTTGATCCTTTCCTT
CTGCTCGACGAGTTCAATGTAACGAAGCCAGCTGGATTCCCGGACCATCC
TCACAGAGGAATGCAGACCGTAACTTATATGCTCGAAGGCGCCTTCCGGC
ACGAGGATAATAAAGGTCATGCAGGAACCATTGGAGTTGGTGATTTGCAA
TGGATGACCGCTGGTCGGGGTATTGTCCACAGTGAAATGCCCGCCACCAA
TGGCAGCAATATAGGTTTGCAGTTGTGGGTAAATCTTGCTGCCAAGGAAA
AGATGACGAAGCCACAGTATCAAGAGCTCTTGGCTGAAGACGTGCCATTG
GCCAAGAATGAAGATGGCTCCATCGAGGTAAAGGTTATTGCCGGCAAGTG
TTTCGACGTTGAAAGCAAAGTATTCACACAAACTCCAACCTTGTACTGGG
ATGTGCGAATGTTGAAAAGCGCCACTTTTGAAGAACAAATACCGGAGCAT
TACAACGCCTTTCTTTACGTATTGGAAGGCAAAGTGACTACGGGGAAAAA
GGATGTTGACGGTGAGCACGGGTCATGCATTGTATTCGGTCCCGGGGAGG
GCGTACAAGTCAAATCAGACGACGAGGCTAGATTTGTTGTGCTCGCTGGA
CAACCTTTGAAAGAACCCATAGTGCAACATGGTCCATTTGTAATGAACAC
GAAGGAACAAATCATGCAAGCCTTCCGAGACTATTCCGCTGGAAAGTTTT
AA
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