Gchil2468.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2468.t1
Unique Name	Gchil2468.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1227365..1228420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005650311.1
PFAMs	JAB
Max annot lvl	3041\|Chlorophyta
Evalue	6.81e-26
EggNOG OGs	COG1310@1\|root,KOG1555@2759\|Eukaryota,37WKW@33090\|Viridiplantae,34I58@3041\|Chlorophyta
Description	metallopeptidase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2468	Gchil2468	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1227365..1228420 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2468.t1.start1	Gchil2468.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1227365..1227367 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2468.t1.CDS1	Gchil2468.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1227365..1228420 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2468.t1.exon1	Gchil2468.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1227365..1228420 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2468.t1.stop1	Gchil2468.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1228418..1228420 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2468.t1	Gchil2468.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1227365..1228420 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1227365..1228420+
coding sequence from alignment at tig00004400_pilon:1227365..1228420+

mRNA sequence

>Gchil2468.t1 ID=Gchil2468.t1|Name=Gchil2468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MSREHAELIDLTDAAAQPLRRSTRNRKQTEPFTIHVDQRPVANQSAKEQR
LEQLPYRTAEELGVDPLTVPYIRVHPVALALITFHAHLTKTEIIGYLGGF
VTHVGPRCEILIAEAFPARQVKPSDLAKTGRSAFTEVEALPESTIEIASR
AEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKDDPFVAAII
APYNDQLPDHHPDIQFFRVSAQQSPLQMPYEVCYSRLAQHLHPSTPHDTT
FPLDAFMGECYDLISEYSAFGRRARLDKEWRNQVLGVSKLKRALHDIVQS
SQPSQQELLYRSAIDALVVAVEQAWNDSSEQELERRRQNTAKKRKKRSRR
W*

spliced messenger RNA

>Gchil2468.t1 ID=Gchil2468.t1|Name=Gchil2468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004400_pilon:1227365..1228420+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCGAGCATGCAGAGCTCATCGATCTCACCGATGCCGCTGCGCA
GCCGCTGCGCCGCTCCACCAGGAACCGAAAGCAGACCGAGCCGTTCACCA
TCCACGTCGACCAGCGCCCCGTCGCTAATCAGTCCGCCAAGGAGCAGCGC
TTGGAGCAGCTTCCGTATCGCACCGCCGAGGAGCTTGGAGTGGACCCTCT
CACCGTTCCTTACATCCGCGTGCATCCCGTCGCGCTGGCGCTCATCACCT
TCCATGCCCACTTGACCAAGACCGAAATCATCGGCTACTTGGGAGGCTTT
GTCACTCACGTCGGTCCACGATGTGAGATTCTTATTGCAGAAGCGTTTCC
AGCGCGCCAGGTCAAGCCCAGCGACTTGGCCAAGACAGGCCGTTCTGCCT
TCACCGAGGTCGAGGCCTTGCCGGAGAGCACCATCGAGATTGCCAGTCGC
GCCGAGGCAAAGGGTATGCGCGTTGTGGGTTGGTATCACAGTCATCCCGA
CGAAACTTTCACTACCGAACCTTCTCGCGTTGACATTGAGAACCAACAAA
ACTATCAGCAACACGTTTACAAGGATGATCCGTTTGTTGCCGCTATCATT
GCTCCTTACAATGACCAACTTCCCGATCATCATCCCGATATTCAGTTTTT
TCGCGTGTCTGCGCAGCAATCGCCGCTGCAGATGCCCTATGAAGTTTGTT
ACTCGCGACTTGCACAGCATTTGCATCCGTCCACACCGCACGACACCACT
TTCCCGCTGGATGCCTTCATGGGCGAGTGTTACGATCTAATATCAGAGTA
TTCTGCATTTGGTCGCCGCGCCCGATTAGACAAGGAATGGAGAAACCAAG
TCTTGGGCGTTTCCAAACTCAAACGTGCTCTACATGACATTGTGCAATCA
TCGCAACCCTCACAGCAAGAACTACTGTATCGCTCCGCTATTGATGCGCT
TGTCGTGGCTGTTGAACAGGCTTGGAATGATAGTTCTGAGCAAGAACTGG
AGCGACGTAGACAAAACACCGCCAAGAAACGCAAGAAGCGCAGCCGACGA
TGGTAA

protein sequence of Gchil2468.t1

>Gchil2468.t1 ID=Gchil2468.t1|Name=Gchil2468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MSREHAELIDLTDAAAQPLRRSTRNRKQTEPFTIHVDQRPVANQSAKEQR
LEQLPYRTAEELGVDPLTVPYIRVHPVALALITFHAHLTKTEIIGYLGGF
VTHVGPRCEILIAEAFPARQVKPSDLAKTGRSAFTEVEALPESTIEIASR
AEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKDDPFVAAII
APYNDQLPDHHPDIQFFRVSAQQSPLQMPYEVCYSRLAQHLHPSTPHDTT
FPLDAFMGECYDLISEYSAFGRRARLDKEWRNQVLGVSKLKRALHDIVQS
SQPSQQELLYRSAIDALVVAVEQAWNDSSEQELERRRQNTAKKRKKRSRR
W*

mRNA from alignment at tig00004400_pilon:1227365..1228420+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2468.t1 ID=Gchil2468.t1|Name=Gchil2468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004400_pilon:1227365..1228420+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCGAGCATGCAGAGCTCATCGATCTCACCGATGCCGCTGCGCA
GCCGCTGCGCCGCTCCACCAGGAACCGAAAGCAGACCGAGCCGTTCACCA
TCCACGTCGACCAGCGCCCCGTCGCTAATCAGTCCGCCAAGGAGCAGCGC
TTGGAGCAGCTTCCGTATCGCACCGCCGAGGAGCTTGGAGTGGACCCTCT
CACCGTTCCTTACATCCGCGTGCATCCCGTCGCGCTGGCGCTCATCACCT
TCCATGCCCACTTGACCAAGACCGAAATCATCGGCTACTTGGGAGGCTTT
GTCACTCACGTCGGTCCACGATGTGAGATTCTTATTGCAGAAGCGTTTCC
AGCGCGCCAGGTCAAGCCCAGCGACTTGGCCAAGACAGGCCGTTCTGCCT
TCACCGAGGTCGAGGCCTTGCCGGAGAGCACCATCGAGATTGCCAGTCGC
GCCGAGGCAAAGGGTATGCGCGTTGTGGGTTGGTATCACAGTCATCCCGA
CGAAACTTTCACTACCGAACCTTCTCGCGTTGACATTGAGAACCAACAAA
ACTATCAGCAACACGTTTACAAGGATGATCCGTTTGTTGCCGCTATCATT
GCTCCTTACAATGACCAACTTCCCGATCATCATCCCGATATTCAGTTTTT
TCGCGTGTCTGCGCAGCAATCGCCGCTGCAGATGCCCTATGAAGTTTGTT
ACTCGCGACTTGCACAGCATTTGCATCCGTCCACACCGCACGACACCACT
TTCCCGCTGGATGCCTTCATGGGCGAGTGTTACGATCTAATATCAGAGTA
TTCTGCATTTGGTCGCCGCGCCCGATTAGACAAGGAATGGAGAAACCAAG
TCTTGGGCGTTTCCAAACTCAAACGTGCTCTACATGACATTGTGCAATCA
TCGCAACCCTCACAGCAAGAACTACTGTATCGCTCCGCTATTGATGCGCT
TGTCGTGGCTGTTGAACAGGCTTGGAATGATAGTTCTGAGCAAGAACTGG
AGCGACGTAGACAAAACACCGCCAAGAAACGCAAGAAGCGCAGCCGACGA
TGGTAA

Coding sequence (CDS) from alignment at tig00004400_pilon:1227365..1228420+

>Gchil2468.t1 ID=Gchil2468.t1|Name=Gchil2468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004400_pilon:1227365..1228420+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCGAGCATGCAGAGCTCATCGATCTCACCGATGCCGCTGCGCA
GCCGCTGCGCCGCTCCACCAGGAACCGAAAGCAGACCGAGCCGTTCACCA
TCCACGTCGACCAGCGCCCCGTCGCTAATCAGTCCGCCAAGGAGCAGCGC
TTGGAGCAGCTTCCGTATCGCACCGCCGAGGAGCTTGGAGTGGACCCTCT
CACCGTTCCTTACATCCGCGTGCATCCCGTCGCGCTGGCGCTCATCACCT
TCCATGCCCACTTGACCAAGACCGAAATCATCGGCTACTTGGGAGGCTTT
GTCACTCACGTCGGTCCACGATGTGAGATTCTTATTGCAGAAGCGTTTCC
AGCGCGCCAGGTCAAGCCCAGCGACTTGGCCAAGACAGGCCGTTCTGCCT
TCACCGAGGTCGAGGCCTTGCCGGAGAGCACCATCGAGATTGCCAGTCGC
GCCGAGGCAAAGGGTATGCGCGTTGTGGGTTGGTATCACAGTCATCCCGA
CGAAACTTTCACTACCGAACCTTCTCGCGTTGACATTGAGAACCAACAAA
ACTATCAGCAACACGTTTACAAGGATGATCCGTTTGTTGCCGCTATCATT
GCTCCTTACAATGACCAACTTCCCGATCATCATCCCGATATTCAGTTTTT
TCGCGTGTCTGCGCAGCAATCGCCGCTGCAGATGCCCTATGAAGTTTGTT
ACTCGCGACTTGCACAGCATTTGCATCCGTCCACACCGCACGACACCACT
TTCCCGCTGGATGCCTTCATGGGCGAGTGTTACGATCTAATATCAGAGTA
TTCTGCATTTGGTCGCCGCGCCCGATTAGACAAGGAATGGAGAAACCAAG
TCTTGGGCGTTTCCAAACTCAAACGTGCTCTACATGACATTGTGCAATCA
TCGCAACCCTCACAGCAAGAACTACTGTATCGCTCCGCTATTGATGCGCT
TGTCGTGGCTGTTGAACAGGCTTGGAATGATAGTTCTGAGCAAGAACTGG
AGCGACGTAGACAAAACACCGCCAAGAAACGCAAGAAGCGCAGCCGACGA
TGGTAA