Gchil2467.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2467.t1
Unique NameGchil2467.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1226126..1226953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LDV8
Preferred nameRPI2
PFAMsRib_5-P_isom_A
Max annot lvl2759|Eukaryota
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue4.73e-117
EggNOG OGsCOG0120@1|root,KOG3075@2759|Eukaryota
EC5.3.1.6
Descriptionribose-5-phosphate isomerase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2467Gchil2467Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1226126..1226953 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2467.t1.stop1Gchil2467.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1226126..1226128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2467.t1.CDS1Gchil2467.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1226126..1226953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2467.t1.exon1Gchil2467.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1226126..1226953 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2467.t1.start1Gchil2467.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1226951..1226953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2467.t1Gchil2467.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1226126..1226953 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2467.t1 ID=Gchil2467.t1|Name=Gchil2467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MFAFVSPLGVRCVKHSSRARVCERGPSRARRATPAHVAMAVAPSVDELKK
QTGYKAVDDYVKSGMVVGLGTGSTAKFAVDRLGEKLKSGQLTDIVAIPTS
IRTKQQAESLGIPLVSLDTHPVLDVAIDGADEVDPALNLVKGRGGALLRE
KMVEVQAKKFVVIVDESKLVHGLGISGAMPVELTPFCWQFNLNRLLNLDS
IHGCTAKLRMDADKPYVTDNDNYIVDLYFDAPIKDPALAASQIESLVGVV
EHGLFLGMSSAVIIAGAEGVYVKQP*
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spliced messenger RNA

>Gchil2467.t1 ID=Gchil2467.t1|Name=Gchil2467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004400_pilon:1226126..1226953- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCGTTCGTTTCACCTCTTGGCGTGCGCTGTGTCAAGCATTCTTC
GCGCGCGCGCGTTTGTGAGCGCGGTCCGTCTCGAGCGCGCCGCGCTACGC
CCGCTCACGTTGCCATGGCAGTCGCGCCGTCCGTGGACGAGCTCAAGAAG
CAGACCGGCTACAAGGCCGTCGACGACTACGTCAAGTCTGGTATGGTTGT
TGGCCTTGGCACCGGTTCCACCGCAAAGTTTGCCGTCGATCGTCTTGGCG
AAAAGCTCAAGTCCGGCCAGCTCACCGACATCGTCGCCATTCCCACCTCC
ATCCGCACCAAACAGCAGGCCGAGTCGCTTGGCATTCCGCTCGTCTCTTT
GGATACTCACCCTGTTCTGGACGTCGCCATCGATGGCGCCGACGAGGTTG
ATCCGGCGCTCAACCTTGTCAAGGGCCGCGGCGGCGCCTTGCTGCGCGAG
AAAATGGTCGAGGTCCAGGCCAAAAAGTTTGTTGTTATCGTCGATGAGAG
CAAATTGGTCCACGGGCTGGGCATCAGCGGCGCCATGCCGGTGGAGCTCA
CCCCGTTCTGCTGGCAGTTCAATCTCAACCGTCTCCTCAACCTTGACAGT
ATCCACGGATGCACCGCCAAGCTTAGAATGGACGCTGACAAACCCTATGT
CACTGACAATGACAACTACATTGTTGACCTTTATTTTGACGCCCCTATCA
AAGACCCTGCCCTGGCAGCTAGCCAAATCGAGAGCCTAGTTGGCGTCGTC
GAACATGGGCTCTTCCTTGGCATGTCCAGTGCCGTCATAATTGCCGGCGC
CGAGGGTGTCTATGTCAAACAGCCGTAA
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protein sequence of Gchil2467.t1

>Gchil2467.t1 ID=Gchil2467.t1|Name=Gchil2467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MFAFVSPLGVRCVKHSSRARVCERGPSRARRATPAHVAMAVAPSVDELKK
QTGYKAVDDYVKSGMVVGLGTGSTAKFAVDRLGEKLKSGQLTDIVAIPTS
IRTKQQAESLGIPLVSLDTHPVLDVAIDGADEVDPALNLVKGRGGALLRE
KMVEVQAKKFVVIVDESKLVHGLGISGAMPVELTPFCWQFNLNRLLNLDS
IHGCTAKLRMDADKPYVTDNDNYIVDLYFDAPIKDPALAASQIESLVGVV
EHGLFLGMSSAVIIAGAEGVYVKQP*
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mRNA from alignment at tig00004400_pilon:1226126..1226953-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2467.t1 ID=Gchil2467.t1|Name=Gchil2467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004400_pilon:1226126..1226953- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCGTTCGTTTCACCTCTTGGCGTGCGCTGTGTCAAGCATTCTTC
GCGCGCGCGCGTTTGTGAGCGCGGTCCGTCTCGAGCGCGCCGCGCTACGC
CCGCTCACGTTGCCATGGCAGTCGCGCCGTCCGTGGACGAGCTCAAGAAG
CAGACCGGCTACAAGGCCGTCGACGACTACGTCAAGTCTGGTATGGTTGT
TGGCCTTGGCACCGGTTCCACCGCAAAGTTTGCCGTCGATCGTCTTGGCG
AAAAGCTCAAGTCCGGCCAGCTCACCGACATCGTCGCCATTCCCACCTCC
ATCCGCACCAAACAGCAGGCCGAGTCGCTTGGCATTCCGCTCGTCTCTTT
GGATACTCACCCTGTTCTGGACGTCGCCATCGATGGCGCCGACGAGGTTG
ATCCGGCGCTCAACCTTGTCAAGGGCCGCGGCGGCGCCTTGCTGCGCGAG
AAAATGGTCGAGGTCCAGGCCAAAAAGTTTGTTGTTATCGTCGATGAGAG
CAAATTGGTCCACGGGCTGGGCATCAGCGGCGCCATGCCGGTGGAGCTCA
CCCCGTTCTGCTGGCAGTTCAATCTCAACCGTCTCCTCAACCTTGACAGT
ATCCACGGATGCACCGCCAAGCTTAGAATGGACGCTGACAAACCCTATGT
CACTGACAATGACAACTACATTGTTGACCTTTATTTTGACGCCCCTATCA
AAGACCCTGCCCTGGCAGCTAGCCAAATCGAGAGCCTAGTTGGCGTCGTC
GAACATGGGCTCTTCCTTGGCATGTCCAGTGCCGTCATAATTGCCGGCGC
CGAGGGTGTCTATGTCAAACAGCCGTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1226126..1226953-

>Gchil2467.t1 ID=Gchil2467.t1|Name=Gchil2467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00004400_pilon:1226126..1226953- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCGTTCGTTTCACCTCTTGGCGTGCGCTGTGTCAAGCATTCTTC
GCGCGCGCGCGTTTGTGAGCGCGGTCCGTCTCGAGCGCGCCGCGCTACGC
CCGCTCACGTTGCCATGGCAGTCGCGCCGTCCGTGGACGAGCTCAAGAAG
CAGACCGGCTACAAGGCCGTCGACGACTACGTCAAGTCTGGTATGGTTGT
TGGCCTTGGCACCGGTTCCACCGCAAAGTTTGCCGTCGATCGTCTTGGCG
AAAAGCTCAAGTCCGGCCAGCTCACCGACATCGTCGCCATTCCCACCTCC
ATCCGCACCAAACAGCAGGCCGAGTCGCTTGGCATTCCGCTCGTCTCTTT
GGATACTCACCCTGTTCTGGACGTCGCCATCGATGGCGCCGACGAGGTTG
ATCCGGCGCTCAACCTTGTCAAGGGCCGCGGCGGCGCCTTGCTGCGCGAG
AAAATGGTCGAGGTCCAGGCCAAAAAGTTTGTTGTTATCGTCGATGAGAG
CAAATTGGTCCACGGGCTGGGCATCAGCGGCGCCATGCCGGTGGAGCTCA
CCCCGTTCTGCTGGCAGTTCAATCTCAACCGTCTCCTCAACCTTGACAGT
ATCCACGGATGCACCGCCAAGCTTAGAATGGACGCTGACAAACCCTATGT
CACTGACAATGACAACTACATTGTTGACCTTTATTTTGACGCCCCTATCA
AAGACCCTGCCCTGGCAGCTAGCCAAATCGAGAGCCTAGTTGGCGTCGTC
GAACATGGGCTCTTCCTTGGCATGTCCAGTGCCGTCATAATTGCCGGCGC
CGAGGGTGTCTATGTCAAACAGCCGTAA
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