Gchil2463.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2463.t1
Unique Name	Gchil2463.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	550

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1219683..1221332 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4641.GSMUA_Achr11P24160_001
Preferred name	DDB2
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10140
KEGG Pathway	ko03420,ko04115,ko04120,ko05161,ko05200,ko05202,ko05210,ko05212,ko05213,ko05214,ko05216,ko05217,ko05218,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map03420,map04115,map04120,map05161,map05200,map05202,map05210,map05212,map05213,map05214,map05216,map05217,map05218,map05220,map05222,map05223,map05224,map05225,map05226
KEGG Module	M00385
GOs	GO:0000151,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0031461,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Evalue	5.05e-78
EggNOG OGs	KOG4328@1\|root,KOG4328@2759\|Eukaryota,37P4Y@33090\|Viridiplantae,3GB40@35493\|Streptophyta,3KRJ3@4447\|Liliopsida
Description	Protein DAMAGED DNA-BINDING 2
COG category	S
BRITE	ko00000,ko00001,ko00002,ko03400,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2463	Gchil2463	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1219683..1221332 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2463.t1.stop1	Gchil2463.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1219683..1219685 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2463.t1.CDS1	Gchil2463.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1219683..1221332 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2463.t1.exon1	Gchil2463.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1219683..1221332 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2463.t1.start1	Gchil2463.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1221330..1221332 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2463.t1	Gchil2463.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1219683..1221332 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1219683..1221332-
coding sequence from alignment at tig00004400_pilon:1219683..1221332-

mRNA sequence

>Gchil2463.t1 ID=Gchil2463.t1|Name=Gchil2463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=550bp
MRVPAGDERTGLLLRKRYQAVGCYYCRDKNASHATDHVHTDCPYRPCFLC
KKKGHISFQCPYRTKPNAHSLALSRLLRSRERLAHLHCFVRERETSSSLD
RLNAALPYLRNRQFDCQVASIVLRAHPKRITAVEWHPSGSFLLSGDKAGV
LRLLAPTHSLASASFHRKTVPLFQSQPSHVHHCNINNIAFDSNPDVCYTS
SSDGKVSALRIPLMETGRTEALEDPVSACDTIVDLNPDGWRRSVSFKMAY
GMAYDTTRKCLYVGASDGTIRRFDPRESCNTADVMSKFHASKVTCIHLNP
VNSDLLVTASNDTLICLWDARKFVENQSLGWYKHDRVVSSAYFSPNTGSK
LLTTSLDNKLRVWDNIHAIQGFANQNEDAQPLEIVHSHDFHRHLTAFRAV
WDPKDWRDDLFMCGRFLGDAYLDEEGSDDDAQVLHPIDMFSAKAGTVVHS
LIDSDVQLICTSNKYSPSSDVIATAASQNLILWSPPPKDSSDDGEQDKNN
KFKRRARRNSDASDNDESDGGGGAPGPRKKLKTVVVRSTKRSMRTRSNA*

spliced messenger RNA

>Gchil2463.t1 ID=Gchil2463.t1|Name=Gchil2463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00004400_pilon:1219683..1221332- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGCCAGCCGGCGACGAGCGCACAGGGCTCCTACTGCGAAAGCG
CTACCAAGCAGTGGGCTGCTACTACTGTCGCGACAAGAACGCCTCCCACG
CTACCGACCACGTGCACACAGACTGCCCATACCGTCCGTGCTTTCTCTGC
AAGAAGAAGGGCCACATCTCGTTCCAATGTCCGTACCGCACTAAGCCTAA
CGCCCACTCGCTGGCGCTCAGTCGACTGCTGAGGAGCCGAGAGCGTCTCG
CTCATCTGCACTGCTTTGTCAGGGAGCGCGAGACCAGTTCTTCGTTGGAT
CGACTAAATGCTGCGCTGCCTTACCTCAGAAACAGGCAGTTTGACTGCCA
AGTTGCTTCCATTGTGTTGAGAGCGCACCCCAAACGCATCACAGCTGTCG
AATGGCATCCTTCGGGCTCGTTTCTGTTGTCAGGCGACAAGGCCGGCGTT
CTCAGGCTCCTGGCCCCTACCCACTCCTTGGCGTCTGCCTCGTTTCACCG
CAAAACCGTCCCGCTGTTTCAATCACAACCGTCCCATGTTCACCACTGCA
ATATTAATAACATTGCCTTTGACAGCAATCCCGACGTTTGTTACACCTCT
AGCAGTGATGGAAAGGTGTCTGCGCTGAGAATACCTTTGATGGAAACAGG
TCGCACCGAAGCACTCGAAGACCCTGTCAGTGCTTGTGACACTATTGTCG
ACCTCAATCCGGATGGATGGCGCCGTAGCGTTAGTTTTAAGATGGCATAT
GGCATGGCATACGATACCACCCGAAAATGCCTCTATGTCGGCGCTTCAGA
CGGCACAATCCGTCGTTTTGATCCACGTGAATCTTGTAATACCGCTGATG
TCATGTCAAAGTTTCATGCGTCAAAGGTTACCTGCATCCATTTGAATCCG
GTCAACTCAGATCTGCTTGTCACCGCAAGCAATGACACCCTCATATGTCT
TTGGGATGCACGCAAATTTGTCGAGAACCAGTCATTAGGATGGTACAAAC
ACGATCGAGTGGTTTCTTCCGCATACTTTTCTCCAAACACAGGGTCCAAG
TTGCTCACCACTTCCTTGGATAACAAGCTCAGAGTTTGGGATAACATCCA
TGCAATCCAGGGCTTTGCCAATCAAAATGAGGACGCTCAGCCGTTGGAGA
TCGTTCATTCCCATGATTTCCATCGTCATCTCACCGCGTTTCGCGCCGTA
TGGGACCCCAAGGATTGGAGGGATGATCTCTTCATGTGCGGTAGGTTTTT
GGGAGATGCTTATCTCGACGAGGAAGGGAGTGATGATGATGCCCAAGTTT
TGCACCCGATTGACATGTTTTCTGCCAAGGCCGGTACCGTTGTCCACTCG
CTTATTGATTCGGATGTGCAACTTATTTGTACTTCTAATAAGTATTCGCC
GTCTTCTGATGTCATTGCCACCGCTGCCTCGCAAAACTTGATCTTGTGGT
CCCCTCCCCCCAAGGATAGCAGCGATGATGGTGAACAGGACAAGAACAAC
AAATTCAAGAGACGCGCCCGACGAAATTCTGATGCCAGCGACAATGATGA
AAGCGACGGTGGGGGTGGAGCACCTGGCCCGAGAAAGAAGCTGAAGACTG
TCGTTGTGAGATCCACGAAGAGATCGATGAGAACGCGTTCCAATGCGTGA

protein sequence of Gchil2463.t1

>Gchil2463.t1 ID=Gchil2463.t1|Name=Gchil2463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=550bp
MRVPAGDERTGLLLRKRYQAVGCYYCRDKNASHATDHVHTDCPYRPCFLC
KKKGHISFQCPYRTKPNAHSLALSRLLRSRERLAHLHCFVRERETSSSLD
RLNAALPYLRNRQFDCQVASIVLRAHPKRITAVEWHPSGSFLLSGDKAGV
LRLLAPTHSLASASFHRKTVPLFQSQPSHVHHCNINNIAFDSNPDVCYTS
SSDGKVSALRIPLMETGRTEALEDPVSACDTIVDLNPDGWRRSVSFKMAY
GMAYDTTRKCLYVGASDGTIRRFDPRESCNTADVMSKFHASKVTCIHLNP
VNSDLLVTASNDTLICLWDARKFVENQSLGWYKHDRVVSSAYFSPNTGSK
LLTTSLDNKLRVWDNIHAIQGFANQNEDAQPLEIVHSHDFHRHLTAFRAV
WDPKDWRDDLFMCGRFLGDAYLDEEGSDDDAQVLHPIDMFSAKAGTVVHS
LIDSDVQLICTSNKYSPSSDVIATAASQNLILWSPPPKDSSDDGEQDKNN
KFKRRARRNSDASDNDESDGGGGAPGPRKKLKTVVVRSTKRSMRTRSNA*

mRNA from alignment at tig00004400_pilon:1219683..1221332-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2463.t1 ID=Gchil2463.t1|Name=Gchil2463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00004400_pilon:1219683..1221332- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTGCCAGCCGGCGACGAGCGCACAGGGCTCCTACTGCGAAAGCG
CTACCAAGCAGTGGGCTGCTACTACTGTCGCGACAAGAACGCCTCCCACG
CTACCGACCACGTGCACACAGACTGCCCATACCGTCCGTGCTTTCTCTGC
AAGAAGAAGGGCCACATCTCGTTCCAATGTCCGTACCGCACTAAGCCTAA
CGCCCACTCGCTGGCGCTCAGTCGACTGCTGAGGAGCCGAGAGCGTCTCG
CTCATCTGCACTGCTTTGTCAGGGAGCGCGAGACCAGTTCTTCGTTGGAT
CGACTAAATGCTGCGCTGCCTTACCTCAGAAACAGGCAGTTTGACTGCCA
AGTTGCTTCCATTGTGTTGAGAGCGCACCCCAAACGCATCACAGCTGTCG
AATGGCATCCTTCGGGCTCGTTTCTGTTGTCAGGCGACAAGGCCGGCGTT
CTCAGGCTCCTGGCCCCTACCCACTCCTTGGCGTCTGCCTCGTTTCACCG
CAAAACCGTCCCGCTGTTTCAATCACAACCGTCCCATGTTCACCACTGCA
ATATTAATAACATTGCCTTTGACAGCAATCCCGACGTTTGTTACACCTCT
AGCAGTGATGGAAAGGTGTCTGCGCTGAGAATACCTTTGATGGAAACAGG
TCGCACCGAAGCACTCGAAGACCCTGTCAGTGCTTGTGACACTATTGTCG
ACCTCAATCCGGATGGATGGCGCCGTAGCGTTAGTTTTAAGATGGCATAT
GGCATGGCATACGATACCACCCGAAAATGCCTCTATGTCGGCGCTTCAGA
CGGCACAATCCGTCGTTTTGATCCACGTGAATCTTGTAATACCGCTGATG
TCATGTCAAAGTTTCATGCGTCAAAGGTTACCTGCATCCATTTGAATCCG
GTCAACTCAGATCTGCTTGTCACCGCAAGCAATGACACCCTCATATGTCT
TTGGGATGCACGCAAATTTGTCGAGAACCAGTCATTAGGATGGTACAAAC
ACGATCGAGTGGTTTCTTCCGCATACTTTTCTCCAAACACAGGGTCCAAG
TTGCTCACCACTTCCTTGGATAACAAGCTCAGAGTTTGGGATAACATCCA
TGCAATCCAGGGCTTTGCCAATCAAAATGAGGACGCTCAGCCGTTGGAGA
TCGTTCATTCCCATGATTTCCATCGTCATCTCACCGCGTTTCGCGCCGTA
TGGGACCCCAAGGATTGGAGGGATGATCTCTTCATGTGCGGTAGGTTTTT
GGGAGATGCTTATCTCGACGAGGAAGGGAGTGATGATGATGCCCAAGTTT
TGCACCCGATTGACATGTTTTCTGCCAAGGCCGGTACCGTTGTCCACTCG
CTTATTGATTCGGATGTGCAACTTATTTGTACTTCTAATAAGTATTCGCC
GTCTTCTGATGTCATTGCCACCGCTGCCTCGCAAAACTTGATCTTGTGGT
CCCCTCCCCCCAAGGATAGCAGCGATGATGGTGAACAGGACAAGAACAAC
AAATTCAAGAGACGCGCCCGACGAAATTCTGATGCCAGCGACAATGATGA
AAGCGACGGTGGGGGTGGAGCACCTGGCCCGAGAAAGAAGCTGAAGACTG
TCGTTGTGAGATCCACGAAGAGATCGATGAGAACGCGTTCCAATGCGTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:1219683..1221332-

>Gchil2463.t1 ID=Gchil2463.t1|Name=Gchil2463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1650bp|location=Sequence derived from alignment at tig00004400_pilon:1219683..1221332- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTGCCAGCCGGCGACGAGCGCACAGGGCTCCTACTGCGAAAGCG
CTACCAAGCAGTGGGCTGCTACTACTGTCGCGACAAGAACGCCTCCCACG
CTACCGACCACGTGCACACAGACTGCCCATACCGTCCGTGCTTTCTCTGC
AAGAAGAAGGGCCACATCTCGTTCCAATGTCCGTACCGCACTAAGCCTAA
CGCCCACTCGCTGGCGCTCAGTCGACTGCTGAGGAGCCGAGAGCGTCTCG
CTCATCTGCACTGCTTTGTCAGGGAGCGCGAGACCAGTTCTTCGTTGGAT
CGACTAAATGCTGCGCTGCCTTACCTCAGAAACAGGCAGTTTGACTGCCA
AGTTGCTTCCATTGTGTTGAGAGCGCACCCCAAACGCATCACAGCTGTCG
AATGGCATCCTTCGGGCTCGTTTCTGTTGTCAGGCGACAAGGCCGGCGTT
CTCAGGCTCCTGGCCCCTACCCACTCCTTGGCGTCTGCCTCGTTTCACCG
CAAAACCGTCCCGCTGTTTCAATCACAACCGTCCCATGTTCACCACTGCA
ATATTAATAACATTGCCTTTGACAGCAATCCCGACGTTTGTTACACCTCT
AGCAGTGATGGAAAGGTGTCTGCGCTGAGAATACCTTTGATGGAAACAGG
TCGCACCGAAGCACTCGAAGACCCTGTCAGTGCTTGTGACACTATTGTCG
ACCTCAATCCGGATGGATGGCGCCGTAGCGTTAGTTTTAAGATGGCATAT
GGCATGGCATACGATACCACCCGAAAATGCCTCTATGTCGGCGCTTCAGA
CGGCACAATCCGTCGTTTTGATCCACGTGAATCTTGTAATACCGCTGATG
TCATGTCAAAGTTTCATGCGTCAAAGGTTACCTGCATCCATTTGAATCCG
GTCAACTCAGATCTGCTTGTCACCGCAAGCAATGACACCCTCATATGTCT
TTGGGATGCACGCAAATTTGTCGAGAACCAGTCATTAGGATGGTACAAAC
ACGATCGAGTGGTTTCTTCCGCATACTTTTCTCCAAACACAGGGTCCAAG
TTGCTCACCACTTCCTTGGATAACAAGCTCAGAGTTTGGGATAACATCCA
TGCAATCCAGGGCTTTGCCAATCAAAATGAGGACGCTCAGCCGTTGGAGA
TCGTTCATTCCCATGATTTCCATCGTCATCTCACCGCGTTTCGCGCCGTA
TGGGACCCCAAGGATTGGAGGGATGATCTCTTCATGTGCGGTAGGTTTTT
GGGAGATGCTTATCTCGACGAGGAAGGGAGTGATGATGATGCCCAAGTTT
TGCACCCGATTGACATGTTTTCTGCCAAGGCCGGTACCGTTGTCCACTCG
CTTATTGATTCGGATGTGCAACTTATTTGTACTTCTAATAAGTATTCGCC
GTCTTCTGATGTCATTGCCACCGCTGCCTCGCAAAACTTGATCTTGTGGT
CCCCTCCCCCCAAGGATAGCAGCGATGATGGTGAACAGGACAAGAACAAC
AAATTCAAGAGACGCGCCCGACGAAATTCTGATGCCAGCGACAATGATGA
AAGCGACGGTGGGGGTGGAGCACCTGGCCCGAGAAAGAAGCTGAAGACTG
TCGTTGTGAGATCCACGAAGAGATCGATGAGAACGCGTTCCAATGCGTGA