Gchil2462.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2462.t1
Unique NameGchil2462.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1216915..1218468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2462Gchil2462Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1216915..1218468 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2462.t1.start1Gchil2462.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1216915..1216917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2462.t1.CDS1Gchil2462.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1216915..1218468 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2462.t1.exon1Gchil2462.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1216915..1218468 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2462.t1.stop1Gchil2462.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1218466..1218468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2462.t1Gchil2462.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1216915..1218468 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2462.t1 ID=Gchil2462.t1|Name=Gchil2462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=518bp
MKRNRAFDDDGAAPSLASVQPLDLERLADDLELSEQVRHSVQQIVDEWDP
TPAAVVNADADTAVSDAVPSKSAFSAHPMRLWASLRRLWTAVVPDTVAPD
APASSIRPAVRLNSRPRPRQRPRRLLTAAAERAATVNARRHHALAPTPPD
GDPFFTPSSASCARADAQPVSVQPRAPHVKSFRFTPRLTRIRAEERMLST
QSRLRTPPDKTASNKLALHRAVHHAQTPSSPSTELTVPTTPRSTPPKSPS
FTDESLNSPHHKPAPMSHALSASSFASKLTSLSVTNTASTLAPATPHHTP
SPCHLHEQLASLSIVDPPPPHQSLDDFFDVDIDDSDVPTNAFPTDDDIST
MRLLRNRSQSTPEPLRRAPISPPSPQKQSALRTLRTSRTVRRVAKAAVQD
VERLASLRRRITGDMRVDRRLAHLRLLQSQLRARSARLPSAEDAKQRFAG
ALDTLRERKRQALIQQQRRLSSSWRVPKLGDVPRNVKLPPLRRLTRRPKE
QSVTSSPTDIRRTGYAG*
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spliced messenger RNA

>Gchil2462.t1 ID=Gchil2462.t1|Name=Gchil2462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004400_pilon:1216915..1218468+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGAAACCGCGCCTTCGACGACGACGGCGCCGCGCCGTCGCTGGC
GTCGGTACAGCCGCTCGACCTGGAGCGTCTGGCCGACGACCTGGAGCTGT
CCGAGCAGGTGCGCCACTCCGTACAGCAGATCGTCGACGAGTGGGATCcc
acccccgccgccgttgtcaacgccgacgccgacactgccgtctccgacgc
TGTCCCTTCCAAGTCGGCCTTCTCGGCGCATCCCATGCGTCTGTGGGCCT
CCCTCCGTCGCCTGTGGACCGCCGTCGTGCCCGACACCGTCGCCCCCGAC
GCGCCCGCGTCGTCTATCCGTCCCGCTGTCCGTCTCAACTCCCGTCCGCG
CCCGCGCCAGCGCCCGCGTCGCCTCCTCACAGCTGCGGCGGAGCGCGCCG
CCACCGTGAACGCCCGTCGCCATCACGCCCTCGCCCCAACTCCTCCTGAC
GGCGACCCGTTTTTCACGCCGTCCTCCGCCTCGTGCGCTCGCGCTGATGC
CCAACCAGTTTCTGTGCAACCTCGCGCGCCGCATGTCAAGTCATTTCGCT
TCACGCCGCGATTGACGCGTATTCGCGCCGAGGAACGCATGCTTTCGACC
CAGTCGCGCCTTCGTACGCCGCCGGACAAAACCGCATCGAACAAACTTGC
TTTGCATCGCGCCGTGCATCATGCGCAAACGCCTTCGTCGCCGTCGACCG
AGTTGACTGTGCCCACCACCCCGCGGTCCACGCCGCCCAAGTCACCGTCT
TTCACAGACGAGTCGCTTAACTCCCCGCACCACAAGCCCGCCCCGATGTC
GCACGCTCTTTCCGCCTCGTCCTTTGCGTCGAAGCTTACATCTCTTTCCG
TGACCAATACTGCATCCACGCTTGCCCCGGCAACGCCCCACCACACCCCG
TCGCCATGTCATTTACATGAGCAGCTTGCGAGCCTGTCTATTGTCGATCC
GCCGCCACCGCACCAATCACTGGATGATTTTTTCGATGTCGATATCGATG
ATAGTGATGTGCCCACTAATGCCTTCCCAACCGATGATGACATATCCACC
ATGCGTTTACTTCGCAATCGTTCTCAATCCACTCCGGAGCCGCTTCGTCG
AGCGCCGATCTCTCCGCCAAGTCCGCAAAAGCAATCCGCTCTGAGAACAT
TGCGCACCTCTCGTACCGTTCGACGCGTAGCAAAAGCTGCCGTTCAAGAT
GTTGAACGGCTTGCATCTCTGCGGCGTCGCATCACGGGCGATATGCGCGT
AGACAGACGTCTTGCCCACTTGCGCCTCCTACAATCGCAGTTGCGCGCCA
GAAGCGCCCGCTTACCGTCCGCGGAAGATGCCAAACAACGTTTTGCCGGC
GCCTTGGACACACTGCGCGAGAGAAAGAGACAGGCTTTGATTCAACAACA
GAGACGCCTTTCTAGTTCTTGGAGAGTTCCAAAGCTTGGAGACGTTCCGA
GGAACGTCAAACTGCCCCCGCTACGAAGACTGACAAGAAGACCCAAGGAA
CAGAGCGTGACTTCGAGCCCTACAGACATACGTCGTACTGGTTACGCTGG
TTGA
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protein sequence of Gchil2462.t1

>Gchil2462.t1 ID=Gchil2462.t1|Name=Gchil2462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=518bp
MKRNRAFDDDGAAPSLASVQPLDLERLADDLELSEQVRHSVQQIVDEWDP
TPAAVVNADADTAVSDAVPSKSAFSAHPMRLWASLRRLWTAVVPDTVAPD
APASSIRPAVRLNSRPRPRQRPRRLLTAAAERAATVNARRHHALAPTPPD
GDPFFTPSSASCARADAQPVSVQPRAPHVKSFRFTPRLTRIRAEERMLST
QSRLRTPPDKTASNKLALHRAVHHAQTPSSPSTELTVPTTPRSTPPKSPS
FTDESLNSPHHKPAPMSHALSASSFASKLTSLSVTNTASTLAPATPHHTP
SPCHLHEQLASLSIVDPPPPHQSLDDFFDVDIDDSDVPTNAFPTDDDIST
MRLLRNRSQSTPEPLRRAPISPPSPQKQSALRTLRTSRTVRRVAKAAVQD
VERLASLRRRITGDMRVDRRLAHLRLLQSQLRARSARLPSAEDAKQRFAG
ALDTLRERKRQALIQQQRRLSSSWRVPKLGDVPRNVKLPPLRRLTRRPKE
QSVTSSPTDIRRTGYAG*
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mRNA from alignment at tig00004400_pilon:1216915..1218468+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2462.t1 ID=Gchil2462.t1|Name=Gchil2462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004400_pilon:1216915..1218468+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGAAACCGCGCCTTCGACGACGACGGCGCCGCGCCGTCGCTGGC
GTCGGTACAGCCGCTCGACCTGGAGCGTCTGGCCGACGACCTGGAGCTGT
CCGAGCAGGTGCGCCACTCCGTACAGCAGATCGTCGACGAGTGGGATCcc
acccccgccgccgttgtcaacgccgacgccgacactgccgtctccgacgc
TGTCCCTTCCAAGTCGGCCTTCTCGGCGCATCCCATGCGTCTGTGGGCCT
CCCTCCGTCGCCTGTGGACCGCCGTCGTGCCCGACACCGTCGCCCCCGAC
GCGCCCGCGTCGTCTATCCGTCCCGCTGTCCGTCTCAACTCCCGTCCGCG
CCCGCGCCAGCGCCCGCGTCGCCTCCTCACAGCTGCGGCGGAGCGCGCCG
CCACCGTGAACGCCCGTCGCCATCACGCCCTCGCCCCAACTCCTCCTGAC
GGCGACCCGTTTTTCACGCCGTCCTCCGCCTCGTGCGCTCGCGCTGATGC
CCAACCAGTTTCTGTGCAACCTCGCGCGCCGCATGTCAAGTCATTTCGCT
TCACGCCGCGATTGACGCGTATTCGCGCCGAGGAACGCATGCTTTCGACC
CAGTCGCGCCTTCGTACGCCGCCGGACAAAACCGCATCGAACAAACTTGC
TTTGCATCGCGCCGTGCATCATGCGCAAACGCCTTCGTCGCCGTCGACCG
AGTTGACTGTGCCCACCACCCCGCGGTCCACGCCGCCCAAGTCACCGTCT
TTCACAGACGAGTCGCTTAACTCCCCGCACCACAAGCCCGCCCCGATGTC
GCACGCTCTTTCCGCCTCGTCCTTTGCGTCGAAGCTTACATCTCTTTCCG
TGACCAATACTGCATCCACGCTTGCCCCGGCAACGCCCCACCACACCCCG
TCGCCATGTCATTTACATGAGCAGCTTGCGAGCCTGTCTATTGTCGATCC
GCCGCCACCGCACCAATCACTGGATGATTTTTTCGATGTCGATATCGATG
ATAGTGATGTGCCCACTAATGCCTTCCCAACCGATGATGACATATCCACC
ATGCGTTTACTTCGCAATCGTTCTCAATCCACTCCGGAGCCGCTTCGTCG
AGCGCCGATCTCTCCGCCAAGTCCGCAAAAGCAATCCGCTCTGAGAACAT
TGCGCACCTCTCGTACCGTTCGACGCGTAGCAAAAGCTGCCGTTCAAGAT
GTTGAACGGCTTGCATCTCTGCGGCGTCGCATCACGGGCGATATGCGCGT
AGACAGACGTCTTGCCCACTTGCGCCTCCTACAATCGCAGTTGCGCGCCA
GAAGCGCCCGCTTACCGTCCGCGGAAGATGCCAAACAACGTTTTGCCGGC
GCCTTGGACACACTGCGCGAGAGAAAGAGACAGGCTTTGATTCAACAACA
GAGACGCCTTTCTAGTTCTTGGAGAGTTCCAAAGCTTGGAGACGTTCCGA
GGAACGTCAAACTGCCCCCGCTACGAAGACTGACAAGAAGACCCAAGGAA
CAGAGCGTGACTTCGAGCCCTACAGACATACGTCGTACTGGTTACGCTGG
TTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1216915..1218468+

>Gchil2462.t1 ID=Gchil2462.t1|Name=Gchil2462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00004400_pilon:1216915..1218468+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGAAACCGCGCCTTCGACGACGACGGCGCCGCGCCGTCGCTGGC
GTCGGTACAGCCGCTCGACCTGGAGCGTCTGGCCGACGACCTGGAGCTGT
CCGAGCAGGTGCGCCACTCCGTACAGCAGATCGTCGACGAGTGGGATCcc
acccccgccgccgttgtcaacgccgacgccgacactgccgtctccgacgc
TGTCCCTTCCAAGTCGGCCTTCTCGGCGCATCCCATGCGTCTGTGGGCCT
CCCTCCGTCGCCTGTGGACCGCCGTCGTGCCCGACACCGTCGCCCCCGAC
GCGCCCGCGTCGTCTATCCGTCCCGCTGTCCGTCTCAACTCCCGTCCGCG
CCCGCGCCAGCGCCCGCGTCGCCTCCTCACAGCTGCGGCGGAGCGCGCCG
CCACCGTGAACGCCCGTCGCCATCACGCCCTCGCCCCAACTCCTCCTGAC
GGCGACCCGTTTTTCACGCCGTCCTCCGCCTCGTGCGCTCGCGCTGATGC
CCAACCAGTTTCTGTGCAACCTCGCGCGCCGCATGTCAAGTCATTTCGCT
TCACGCCGCGATTGACGCGTATTCGCGCCGAGGAACGCATGCTTTCGACC
CAGTCGCGCCTTCGTACGCCGCCGGACAAAACCGCATCGAACAAACTTGC
TTTGCATCGCGCCGTGCATCATGCGCAAACGCCTTCGTCGCCGTCGACCG
AGTTGACTGTGCCCACCACCCCGCGGTCCACGCCGCCCAAGTCACCGTCT
TTCACAGACGAGTCGCTTAACTCCCCGCACCACAAGCCCGCCCCGATGTC
GCACGCTCTTTCCGCCTCGTCCTTTGCGTCGAAGCTTACATCTCTTTCCG
TGACCAATACTGCATCCACGCTTGCCCCGGCAACGCCCCACCACACCCCG
TCGCCATGTCATTTACATGAGCAGCTTGCGAGCCTGTCTATTGTCGATCC
GCCGCCACCGCACCAATCACTGGATGATTTTTTCGATGTCGATATCGATG
ATAGTGATGTGCCCACTAATGCCTTCCCAACCGATGATGACATATCCACC
ATGCGTTTACTTCGCAATCGTTCTCAATCCACTCCGGAGCCGCTTCGTCG
AGCGCCGATCTCTCCGCCAAGTCCGCAAAAGCAATCCGCTCTGAGAACAT
TGCGCACCTCTCGTACCGTTCGACGCGTAGCAAAAGCTGCCGTTCAAGAT
GTTGAACGGCTTGCATCTCTGCGGCGTCGCATCACGGGCGATATGCGCGT
AGACAGACGTCTTGCCCACTTGCGCCTCCTACAATCGCAGTTGCGCGCCA
GAAGCGCCCGCTTACCGTCCGCGGAAGATGCCAAACAACGTTTTGCCGGC
GCCTTGGACACACTGCGCGAGAGAAAGAGACAGGCTTTGATTCAACAACA
GAGACGCCTTTCTAGTTCTTGGAGAGTTCCAAAGCTTGGAGACGTTCCGA
GGAACGTCAAACTGCCCCCGCTACGAAGACTGACAAGAAGACCCAAGGAA
CAGAGCGTGACTTCGAGCCCTACAGACATACGTCGTACTGGTTACGCTGG
TTGA
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