Gchil2454.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2454.t1
Unique NameGchil2454.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1170377..1171559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1408424.JHYI01000021_gene42
PFAMsCBM_4_9,CBM_6,Cadherin-like,F5_F8_type_C,FIVAR,Glyco_hydro_16,Gram_pos_anchor,SLH
Max annot lvl91061|Bacilli
Evalue1.94e-42
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,1TR5U@1239|Firmicutes,4HB9D@91061|Bacilli,1ZFAG@1386|Bacillus
DescriptionGlycoside hydrolase family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2454Gchil2454Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1170377..1171559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2454.t1Gchil2454.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1170377..1171559 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2454.t1.stop1Gchil2454.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1170377..1170379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2454.t1.CDS1Gchil2454.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1170377..1171305 -
Gchil2454.t1.CDS2Gchil2454.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1171445..1171559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2454.t1.exon1Gchil2454.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1170377..1171305 -
Gchil2454.t1.exon2Gchil2454.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1171445..1171559 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2454.t1.intron1Gchil2454.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1171306..1171444 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2454.t1.start1Gchil2454.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1171557..1171559 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2454.t1 ID=Gchil2454.t1|Name=Gchil2454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp
MLPLSCSSTRSRSRWLGALFLVLATSSIIVSASLLRHEQTTSQPISSNVN
YSTLVRYIYKARNALSAHPLFAVIRNKNNKHTRKATNKNQNNKEQKWRQR
QLTTCSAANQCSFVDSFKQIQKFRWKVSDGYANGVPFDCWWSASSTSIDQ
KNGQLKLTLSKQNNHGKPYKSGQVMSKNWHGYGCYEVRMRPIAQSGLITT
FFSYTGPWDAAPGKSKAHNEIDIEFVWKKGSGKLSLQANYFTNGQGGNEH
MIPIDFNPAASMNNYAFKWTSKAVTWYVNGKLVYKTSKNIPKASQAPHKI
MMSFWPVSGQAAKWGGHFAYQGHRTVAYEAMRFTKGENCKIKNWFPA*
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spliced messenger RNA

>Gchil2454.t1 ID=Gchil2454.t1|Name=Gchil2454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004400_pilon:1170377..1171559- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCCTTTCATGCTCATCAACGAGGTCGCGTTCGCGGTGGCTGGG
AGCATTGTTTCTTGTGCTCGCAACCTCTTCTATTATTGTTTCAGCTTCAC
TCCTGCGACATGAACAAACAACTTCCCAACCCATATCAAGCAATGTTAAT
TATTCAACGCTCGTAAGGTATATCTACAAGGCACGAAACGCGCTCAGCGC
GCACCCTCTGTTCGCGGTTATTCGCAACAAGAATAATAAACATACCAGAA
AAGCCACAAACAAAAACCAGAATAATAAGGAACAAAAGTGGAGACAAAGG
CAACTAACAACATGTTCTGCAGCAAACCAGTGTTCGTTTGTCGATAGCTT
CAAACAGATACAGAAATTCCGCTGGAAAGTTTCGGATGGATACGCCAACG
GAGTTCCATTTGATTGTTGGTGGTCCGCTTCATCAACTTCAATCGACCAA
AAAAACGGTCAGTTGAAGCTCACCCTTTCAAAACAAAACAACCATGGAAA
GCCCTACAAAAGTGGTCAGGTCATGTCCAAGAACTGGCACGGGTATGGAT
GTTACGAAGTTCGGATGCGACCAATTGCCCAATCTGGGTTGATCACTACC
TTCTTTTCGTACACCGGACCATGGGACGCCGCTCCTGGAAAAAGCAAAGC
ACATAACGAAATCGACATTGAGTTTGTTTGGAAAAAAGGATCAGGAAAGC
TTAGTTTACAGGCAAATTACTTCACAAACGGCCAGGGAGGAAATGAGCAC
ATGATTCCGATCGACTTTAACCCAGCAGCTTCAATGAACAACTACGCGTT
CAAGTGGACTAGTAAGGCCGTCACGTGGTACGTGAACGGAAAATTAGTGT
ACAAGACTTCAAAGAATATCCCAAAAGCGAGTCAAGCGCCGCATAAGATC
ATGATGAGCTTCTGGCCTGTGAGTGGGCAGGCAGCCAAATGGGGCGGCCA
TTTTGCATATCAAGGTCATCGTACGGTCGCTTATGAAGCTATGAGATTCA
CAAAGGGAGAGAACTGTAAGATTAAGAATTGGTTCCCGGCATAA
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protein sequence of Gchil2454.t1

>Gchil2454.t1 ID=Gchil2454.t1|Name=Gchil2454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=348bp
MLPLSCSSTRSRSRWLGALFLVLATSSIIVSASLLRHEQTTSQPISSNVN
YSTLVRYIYKARNALSAHPLFAVIRNKNNKHTRKATNKNQNNKEQKWRQR
QLTTCSAANQCSFVDSFKQIQKFRWKVSDGYANGVPFDCWWSASSTSIDQ
KNGQLKLTLSKQNNHGKPYKSGQVMSKNWHGYGCYEVRMRPIAQSGLITT
FFSYTGPWDAAPGKSKAHNEIDIEFVWKKGSGKLSLQANYFTNGQGGNEH
MIPIDFNPAASMNNYAFKWTSKAVTWYVNGKLVYKTSKNIPKASQAPHKI
MMSFWPVSGQAAKWGGHFAYQGHRTVAYEAMRFTKGENCKIKNWFPA*
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mRNA from alignment at tig00004400_pilon:1170377..1171559-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2454.t1 ID=Gchil2454.t1|Name=Gchil2454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1183bp|location=Sequence derived from alignment at tig00004400_pilon:1170377..1171559- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCCCTTTCATGCTCATCAACGAGGTCGCGTTCGCGGTGGCTGGG
AGCATTGTTTCTTGTGCTCGCAACCTCTTCTATTATTGTTTCAGCTTCAC
TCCTGCGACATGAACGTAAGTTTCCATTTACGGAGCGGCGGCTAACTGCA
ATATTTTTACGAGTCGCCAACAACGATTGAGGAGCGAAGCAAGGATAACT
AACGTTTTCTTCGCCTATCGTGATGTGCAATATGTCAACATGTCCATCAC
ATAGAAACAACTTCCCAACCCATATCAAGCAATGTTAATTATTCAACGCT
CGTAAGGTATATCTACAAGGCACGAAACGCGCTCAGCGCGCACCCTCTGT
TCGCGGTTATTCGCAACAAGAATAATAAACATACCAGAAAAGCCACAAAC
AAAAACCAGAATAATAAGGAACAAAAGTGGAGACAAAGGCAACTAACAAC
ATGTTCTGCAGCAAACCAGTGTTCGTTTGTCGATAGCTTCAAACAGATAC
AGAAATTCCGCTGGAAAGTTTCGGATGGATACGCCAACGGAGTTCCATTT
GATTGTTGGTGGTCCGCTTCATCAACTTCAATCGACCAAAAAAACGGTCA
GTTGAAGCTCACCCTTTCAAAACAAAACAACCATGGAAAGCCCTACAAAA
GTGGTCAGGTCATGTCCAAGAACTGGCACGGGTATGGATGTTACGAAGTT
CGGATGCGACCAATTGCCCAATCTGGGTTGATCACTACCTTCTTTTCGTA
CACCGGACCATGGGACGCCGCTCCTGGAAAAAGCAAAGCACATAACGAAA
TCGACATTGAGTTTGTTTGGAAAAAAGGATCAGGAAAGCTTAGTTTACAG
GCAAATTACTTCACAAACGGCCAGGGAGGAAATGAGCACATGATTCCGAT
CGACTTTAACCCAGCAGCTTCAATGAACAACTACGCGTTCAAGTGGACTA
GTAAGGCCGTCACGTGGTACGTGAACGGAAAATTAGTGTACAAGACTTCA
AAGAATATCCCAAAAGCGAGTCAAGCGCCGCATAAGATCATGATGAGCTT
CTGGCCTGTGAGTGGGCAGGCAGCCAAATGGGGCGGCCATTTTGCATATC
AAGGTCATCGTACGGTCGCTTATGAAGCTATGAGATTCACAAAGGGAGAG
AACTGTAAGATTAAGAATTGGTTCCCGGCATAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1170377..1171559-

>Gchil2454.t1 ID=Gchil2454.t1|Name=Gchil2454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00004400_pilon:1170377..1171559- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCCCTTTCATGCTCATCAACGAGGTCGCGTTCGCGGTGGCTGGG
AGCATTGTTTCTTGTGCTCGCAACCTCTTCTATTATTGTTTCAGCTTCAC
TCCTGCGACATGAACAAACAACTTCCCAACCCATATCAAGCAATGTTAAT
TATTCAACGCTCGTAAGGTATATCTACAAGGCACGAAACGCGCTCAGCGC
GCACCCTCTGTTCGCGGTTATTCGCAACAAGAATAATAAACATACCAGAA
AAGCCACAAACAAAAACCAGAATAATAAGGAACAAAAGTGGAGACAAAGG
CAACTAACAACATGTTCTGCAGCAAACCAGTGTTCGTTTGTCGATAGCTT
CAAACAGATACAGAAATTCCGCTGGAAAGTTTCGGATGGATACGCCAACG
GAGTTCCATTTGATTGTTGGTGGTCCGCTTCATCAACTTCAATCGACCAA
AAAAACGGTCAGTTGAAGCTCACCCTTTCAAAACAAAACAACCATGGAAA
GCCCTACAAAAGTGGTCAGGTCATGTCCAAGAACTGGCACGGGTATGGAT
GTTACGAAGTTCGGATGCGACCAATTGCCCAATCTGGGTTGATCACTACC
TTCTTTTCGTACACCGGACCATGGGACGCCGCTCCTGGAAAAAGCAAAGC
ACATAACGAAATCGACATTGAGTTTGTTTGGAAAAAAGGATCAGGAAAGC
TTAGTTTACAGGCAAATTACTTCACAAACGGCCAGGGAGGAAATGAGCAC
ATGATTCCGATCGACTTTAACCCAGCAGCTTCAATGAACAACTACGCGTT
CAAGTGGACTAGTAAGGCCGTCACGTGGTACGTGAACGGAAAATTAGTGT
ACAAGACTTCAAAGAATATCCCAAAAGCGAGTCAAGCGCCGCATAAGATC
ATGATGAGCTTCTGGCCTGTGAGTGGGCAGGCAGCCAAATGGGGCGGCCA
TTTTGCATATCAAGGTCATCGTACGGTCGCTTATGAAGCTATGAGATTCA
CAAAGGGAGAGAACTGTAAGATTAAGAATTGGTTCCCGGCATAA
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