Gchil2446.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2446.t1
Unique NameGchil2446.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:977359..978018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML309CT
PFAMsDUF3464
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue2.3e-23
EggNOG OGs2AEZ6@1|root,2RXKE@2759|Eukaryota
DescriptionProtein of unknown function (DUF3464)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2446Gchil2446Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 977359..978018 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2446.t1.stop1Gchil2446.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 977359..977361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2446.t1.CDS1Gchil2446.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 977359..978018 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2446.t1.exon1Gchil2446.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 977359..978018 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2446.t1.start1Gchil2446.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 978016..978018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2446.t1Gchil2446.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 977359..978018 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2446.t1 ID=Gchil2446.t1|Name=Gchil2446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=220bp
MGKLAFVFSTPVQRCTSKGKARVCRTQPLAKAGKGFGSRPKKENDRKADK
QGSEGSPFQSPSAPKTAEAFVPRGTTLRQEYERKGVIEPTYNPDAGTLPE
IVANRMLRRIIGFGGVPFGLFFSFFILYFVLKYKYDVTVLPVVVAFTTLG
TIGFATIGITYGIFSSSWDEDVEGSFFGWEQAKKNFVRAKDGLLGARQRE
MKEEELARIDELVEKESED*
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spliced messenger RNA

>Gchil2446.t1 ID=Gchil2446.t1|Name=Gchil2446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00004400_pilon:977359..978018- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAACTGGCATTTGTATTCTCGACGCCTGTGCAAAGATGTACGAG
CAAAGGCAAAGCGAGAGTATGTCGGACGCAACCTCTCGCCAAAGCTGGAA
AAGGGTTTGGAAGCCGGCCGAAAAAGGAAAACGATAGGAAAGCGGACAAA
CAGGGCAGCGAGGGGTCGCCTTTTCAATCTCCTTCTGCGCCAAAAACCGC
TGAAGCTTTTGTTCCGCGTGGAACGACTCTTCGACAAGAATACGAAAGAA
AGGGGGTGATCGAACCGACGTACAACCCAGATGCAGGAACATTGCCCGAA
ATTGTAGCAAACAGGATGTTGCGACGTATAATTGGATTCGGAGGAGTGCC
GTTCGGGTTGTTCTTTAGTTTCTTTATATTGTATTTTGTGCTCAAGTACA
AGTACGACGTGACGGTTCTGCCCGTGGTTGTAGCTTTTACAACGCTTGGG
ACGATTGGATTTGCTACGATAGGAATTACTTATGGTATATTCTCAAGCAG
TTGGGACGAGGATGTGGAAGGAAGTTTTTTTGGGTGGGAACAAGCTAAAA
AGAACTTTGTTCGCGCGAAAGACGGTCTGCTCGGGGCTCGGCAGCGAGAA
ATGAAAGAAGAAGAGCTTGCGAGGATAGACGAATTGGTGGAGAAGGAATC
TGAAGATTGA
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protein sequence of Gchil2446.t1

>Gchil2446.t1 ID=Gchil2446.t1|Name=Gchil2446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=220bp
MGKLAFVFSTPVQRCTSKGKARVCRTQPLAKAGKGFGSRPKKENDRKADK
QGSEGSPFQSPSAPKTAEAFVPRGTTLRQEYERKGVIEPTYNPDAGTLPE
IVANRMLRRIIGFGGVPFGLFFSFFILYFVLKYKYDVTVLPVVVAFTTLG
TIGFATIGITYGIFSSSWDEDVEGSFFGWEQAKKNFVRAKDGLLGARQRE
MKEEELARIDELVEKESED*
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mRNA from alignment at tig00004400_pilon:977359..978018-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2446.t1 ID=Gchil2446.t1|Name=Gchil2446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00004400_pilon:977359..978018- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAACTGGCATTTGTATTCTCGACGCCTGTGCAAAGATGTACGAG
CAAAGGCAAAGCGAGAGTATGTCGGACGCAACCTCTCGCCAAAGCTGGAA
AAGGGTTTGGAAGCCGGCCGAAAAAGGAAAACGATAGGAAAGCGGACAAA
CAGGGCAGCGAGGGGTCGCCTTTTCAATCTCCTTCTGCGCCAAAAACCGC
TGAAGCTTTTGTTCCGCGTGGAACGACTCTTCGACAAGAATACGAAAGAA
AGGGGGTGATCGAACCGACGTACAACCCAGATGCAGGAACATTGCCCGAA
ATTGTAGCAAACAGGATGTTGCGACGTATAATTGGATTCGGAGGAGTGCC
GTTCGGGTTGTTCTTTAGTTTCTTTATATTGTATTTTGTGCTCAAGTACA
AGTACGACGTGACGGTTCTGCCCGTGGTTGTAGCTTTTACAACGCTTGGG
ACGATTGGATTTGCTACGATAGGAATTACTTATGGTATATTCTCAAGCAG
TTGGGACGAGGATGTGGAAGGAAGTTTTTTTGGGTGGGAACAAGCTAAAA
AGAACTTTGTTCGCGCGAAAGACGGTCTGCTCGGGGCTCGGCAGCGAGAA
ATGAAAGAAGAAGAGCTTGCGAGGATAGACGAATTGGTGGAGAAGGAATC
TGAAGATTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:977359..978018-

>Gchil2446.t1 ID=Gchil2446.t1|Name=Gchil2446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00004400_pilon:977359..978018- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAACTGGCATTTGTATTCTCGACGCCTGTGCAAAGATGTACGAG
CAAAGGCAAAGCGAGAGTATGTCGGACGCAACCTCTCGCCAAAGCTGGAA
AAGGGTTTGGAAGCCGGCCGAAAAAGGAAAACGATAGGAAAGCGGACAAA
CAGGGCAGCGAGGGGTCGCCTTTTCAATCTCCTTCTGCGCCAAAAACCGC
TGAAGCTTTTGTTCCGCGTGGAACGACTCTTCGACAAGAATACGAAAGAA
AGGGGGTGATCGAACCGACGTACAACCCAGATGCAGGAACATTGCCCGAA
ATTGTAGCAAACAGGATGTTGCGACGTATAATTGGATTCGGAGGAGTGCC
GTTCGGGTTGTTCTTTAGTTTCTTTATATTGTATTTTGTGCTCAAGTACA
AGTACGACGTGACGGTTCTGCCCGTGGTTGTAGCTTTTACAACGCTTGGG
ACGATTGGATTTGCTACGATAGGAATTACTTATGGTATATTCTCAAGCAG
TTGGGACGAGGATGTGGAAGGAAGTTTTTTTGGGTGGGAACAAGCTAAAA
AGAACTTTGTTCGCGCGAAAGACGGTCTGCTCGGGGCTCGGCAGCGAGAA
ATGAAAGAAGAAGAGCTTGCGAGGATAGACGAATTGGTGGAGAAGGAATC
TGAAGATTGA
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