Gchil2443.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2443.t1
Unique Name	Gchil2443.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	402

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:973784..974989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003284078.1
PFAMs	Pkinase
Max annot lvl	554915\|Amoebozoa
GOs	GO:0000166,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019220,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030554,GO:0031098,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0033674,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Evalue	4.44e-16
EggNOG OGs	KOG0574@1\|root,KOG0574@2759\|Eukaryota,3XEP7@554915\|Amoebozoa
Description	Serine/Threonine protein kinases, catalytic domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2443	Gchil2443	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 973784..974989 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2443.t1.start1	Gchil2443.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 973784..973786 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2443.t1.CDS1	Gchil2443.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 973784..974989 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2443.t1.exon1	Gchil2443.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 973784..974989 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2443.t1.stop1	Gchil2443.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 974987..974989 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2443.t1	Gchil2443.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 973784..974989 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:973784..974989+
coding sequence from alignment at tig00004400_pilon:973784..974989+

mRNA sequence

>Gchil2443.t1 ID=Gchil2443.t1|Name=Gchil2443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp
MSNDSVGVDDHILHGTGICAIDPTQIFIPAAVLSDEHDFGTLLSATVHRS
YVSQIGFANVSIRILSITAKEADALRAVVQRVKHNIRTPLILSYVGVWKN
GSETWLVSERRRQVSVRVLFENIHFADPESIVSHIVNQALSCLRILHQDH
LTSHLSVTHSNIYICHDASVCLGDVGVYSVLCASIKSRRSCSGAKLWPMP
RNLSISYRRAIHSEDVWDLGISILTLMDGSATVARGWRSGKRVPHLANAN
KWSAQLNSFLTVLFSQASIPPCAELLSHRFVANASSSACHAAVAEYFERC
ADLIAEPYRQDIISTLCLKNEVAIQAPLISIDDYSTDLFSCDQWNSVDAD
RATVELSLARMLANFNQKPLCVDIEKNKCAQRTVGAMQTFLETADAEWNR
M*

spliced messenger RNA

>Gchil2443.t1 ID=Gchil2443.t1|Name=Gchil2443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004400_pilon:973784..974989+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAACGACTCGGTCGGTGTGGACGACCACATCCTACATGGAACAGG
CATTTGCGCTATAGACCCCACCCAAATTTTTATTCCCGCCGCCGTTCTCA
GTGACGAGCATGACTTCGGCACCTTGCTTTCGGCCACTGTTCACCGCTCA
TATGTGTCACAGATTGGATTTGCAAACGTCTCCATACGCATCTTGTCCAT
CACCGCCAAGGAGGCCGACGCTTTGCGAGCTGTTGTGCAGCGCGTCAAGC
ACAACATCCGCACGCCGCTTATTCTCAGCTATGTGGGCGTGTGGAAGAAC
GGCTCGGAGACTTGGCTTGTGTCTGAGAGACGACGCCAAGTATCTGTAAG
AGTTCTGTTTGAAAACATTCACTTTGCCGATCCTGAATCTATTGTGTCTC
ACATTGTGAACCAAGCGCTATCATGTTTGCGCATTCTCCATCAAGATCAT
CTCACGTCACACTTATCAGTTACACACTCAAATATATACATTTGCCACGA
TGCCTctgtgtgcctcggtgatgttggagtgtattctgtgctgtgtgcCA
GCATCAAATCACGCCGTTCGTGCTCGGGAGCCAAGCTTTGGCCGATGCCA
CGCAATCTTTCGATCAGCTACAGGCGTGCCATTCACAGCGAGGATGTTTG
GGACTTGGGCATTTCCATTCTCACTTTGATGGATGGCAGTGCCACCGTGG
CGAGGGGTTGGCGATCTGGCAAGCGAGTACCACATTTGGCAAACGCAAAC
AAGTGGTCAGCTCAGTTGAACAGTTTTTTGACGGTTTTGTTTAGTCAAGC
TTCGATTCCGCCATGCGCGGAGCTTTTATCGCACCGCTTTGTTGCAAATG
CCTCTTCCTCAGCGTGCCATGCGGCAGTGGCCGAGTACTTTGAGCGTTGT
GCTGACCTGATAGCAGAGCCTTACCGACAAGATATCATTAGTACTCTTTG
TCTGAAGAATGAGGTTGCTATTCAGGCACCTTTGATTAGCATTGATGACT
ACTCTACGGATTTGTTCTCGTGTGATCAGTGGAATAGTGTGGACGCCGAT
CGGGCTACGGTAGAGCTTTCTCTAGCACGCATGTTGGCCAACTTCAACCA
AAAGCCGTTGTGTGTGGATATTGAAAAAAACAAATGCGCGCAAAGAACGG
TTGGAGCGATGCAGACGTTCCTTGAAACTGCTGATGCTGAATGGAATAGA
ATGTAA

protein sequence of Gchil2443.t1

>Gchil2443.t1 ID=Gchil2443.t1|Name=Gchil2443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MSNDSVGVDDHILHGTGICAIDPTQIFIPAAVLSDEHDFGTLLSATVHRS
YVSQIGFANVSIRILSITAKEADALRAVVQRVKHNIRTPLILSYVGVWKN
GSETWLVSERRRQVSVRVLFENIHFADPESIVSHIVNQALSCLRILHQDH
LTSHLSVTHSNIYICHDASVCLGDVGVYSVLCASIKSRRSCSGAKLWPMP
RNLSISYRRAIHSEDVWDLGISILTLMDGSATVARGWRSGKRVPHLANAN
KWSAQLNSFLTVLFSQASIPPCAELLSHRFVANASSSACHAAVAEYFERC
ADLIAEPYRQDIISTLCLKNEVAIQAPLISIDDYSTDLFSCDQWNSVDAD
RATVELSLARMLANFNQKPLCVDIEKNKCAQRTVGAMQTFLETADAEWNR
M*

mRNA from alignment at tig00004400_pilon:973784..974989+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2443.t1 ID=Gchil2443.t1|Name=Gchil2443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004400_pilon:973784..974989+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAACGACTCGGTCGGTGTGGACGACCACATCCTACATGGAACAGG
CATTTGCGCTATAGACCCCACCCAAATTTTTATTCCCGCCGCCGTTCTCA
GTGACGAGCATGACTTCGGCACCTTGCTTTCGGCCACTGTTCACCGCTCA
TATGTGTCACAGATTGGATTTGCAAACGTCTCCATACGCATCTTGTCCAT
CACCGCCAAGGAGGCCGACGCTTTGCGAGCTGTTGTGCAGCGCGTCAAGC
ACAACATCCGCACGCCGCTTATTCTCAGCTATGTGGGCGTGTGGAAGAAC
GGCTCGGAGACTTGGCTTGTGTCTGAGAGACGACGCCAAGTATCTGTAAG
AGTTCTGTTTGAAAACATTCACTTTGCCGATCCTGAATCTATTGTGTCTC
ACATTGTGAACCAAGCGCTATCATGTTTGCGCATTCTCCATCAAGATCAT
CTCACGTCACACTTATCAGTTACACACTCAAATATATACATTTGCCACGA
TGCCTctgtgtgcctcggtgatgttggagtgtattctgtgctgtgtgcCA
GCATCAAATCACGCCGTTCGTGCTCGGGAGCCAAGCTTTGGCCGATGCCA
CGCAATCTTTCGATCAGCTACAGGCGTGCCATTCACAGCGAGGATGTTTG
GGACTTGGGCATTTCCATTCTCACTTTGATGGATGGCAGTGCCACCGTGG
CGAGGGGTTGGCGATCTGGCAAGCGAGTACCACATTTGGCAAACGCAAAC
AAGTGGTCAGCTCAGTTGAACAGTTTTTTGACGGTTTTGTTTAGTCAAGC
TTCGATTCCGCCATGCGCGGAGCTTTTATCGCACCGCTTTGTTGCAAATG
CCTCTTCCTCAGCGTGCCATGCGGCAGTGGCCGAGTACTTTGAGCGTTGT
GCTGACCTGATAGCAGAGCCTTACCGACAAGATATCATTAGTACTCTTTG
TCTGAAGAATGAGGTTGCTATTCAGGCACCTTTGATTAGCATTGATGACT
ACTCTACGGATTTGTTCTCGTGTGATCAGTGGAATAGTGTGGACGCCGAT
CGGGCTACGGTAGAGCTTTCTCTAGCACGCATGTTGGCCAACTTCAACCA
AAAGCCGTTGTGTGTGGATATTGAAAAAAACAAATGCGCGCAAAGAACGG
TTGGAGCGATGCAGACGTTCCTTGAAACTGCTGATGCTGAATGGAATAGA
ATGTAA

Coding sequence (CDS) from alignment at tig00004400_pilon:973784..974989+

>Gchil2443.t1 ID=Gchil2443.t1|Name=Gchil2443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00004400_pilon:973784..974989+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAACGACTCGGTCGGTGTGGACGACCACATCCTACATGGAACAGG
CATTTGCGCTATAGACCCCACCCAAATTTTTATTCCCGCCGCCGTTCTCA
GTGACGAGCATGACTTCGGCACCTTGCTTTCGGCCACTGTTCACCGCTCA
TATGTGTCACAGATTGGATTTGCAAACGTCTCCATACGCATCTTGTCCAT
CACCGCCAAGGAGGCCGACGCTTTGCGAGCTGTTGTGCAGCGCGTCAAGC
ACAACATCCGCACGCCGCTTATTCTCAGCTATGTGGGCGTGTGGAAGAAC
GGCTCGGAGACTTGGCTTGTGTCTGAGAGACGACGCCAAGTATCTGTAAG
AGTTCTGTTTGAAAACATTCACTTTGCCGATCCTGAATCTATTGTGTCTC
ACATTGTGAACCAAGCGCTATCATGTTTGCGCATTCTCCATCAAGATCAT
CTCACGTCACACTTATCAGTTACACACTCAAATATATACATTTGCCACGA
TGCCTctgtgtgcctcggtgatgttggagtgtattctgtgctgtgtgcCA
GCATCAAATCACGCCGTTCGTGCTCGGGAGCCAAGCTTTGGCCGATGCCA
CGCAATCTTTCGATCAGCTACAGGCGTGCCATTCACAGCGAGGATGTTTG
GGACTTGGGCATTTCCATTCTCACTTTGATGGATGGCAGTGCCACCGTGG
CGAGGGGTTGGCGATCTGGCAAGCGAGTACCACATTTGGCAAACGCAAAC
AAGTGGTCAGCTCAGTTGAACAGTTTTTTGACGGTTTTGTTTAGTCAAGC
TTCGATTCCGCCATGCGCGGAGCTTTTATCGCACCGCTTTGTTGCAAATG
CCTCTTCCTCAGCGTGCCATGCGGCAGTGGCCGAGTACTTTGAGCGTTGT
GCTGACCTGATAGCAGAGCCTTACCGACAAGATATCATTAGTACTCTTTG
TCTGAAGAATGAGGTTGCTATTCAGGCACCTTTGATTAGCATTGATGACT
ACTCTACGGATTTGTTCTCGTGTGATCAGTGGAATAGTGTGGACGCCGAT
CGGGCTACGGTAGAGCTTTCTCTAGCACGCATGTTGGCCAACTTCAACCA
AAAGCCGTTGTGTGTGGATATTGAAAAAAACAAATGCGCGCAAAGAACGG
TTGGAGCGATGCAGACGTTCCTTGAAACTGCTGATGCTGAATGGAATAGA
ATGTAA