Gchil2441.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2441.t1
Unique NameGchil2441.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:972279..972803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERM93898
PFAMsMed22
Max annot lvl35493|Streptophyta
KEGG koko:K15139
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0016592,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013
Evalue1.35e-11
EggNOG OGsKOG3304@1|root,KOG3304@2759|Eukaryota,37TRX@33090|Viridiplantae,3GI8S@35493|Streptophyta
Descriptionmediator of RNA polymerase II transcription subunit
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2441Gchil2441Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 972279..972803 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2441.t1.stop1Gchil2441.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 972279..972281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2441.t1.CDS1Gchil2441.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 972279..972803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2441.t1.exon1Gchil2441.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 972279..972803 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2441.t1.start1Gchil2441.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 972801..972803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2441.t1Gchil2441.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 972279..972803 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2441.t1 ID=Gchil2441.t1|Name=Gchil2441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MALSKARHSVARRVMTSRSQSRAAALPLTHDPTPQRTAPTARELRESYHD
RLDTEIDHVLTAFQDLVASCQISDRPSNARAEYQTQVEASNLANSADHLL
KLIADLKVAVVTQNLAEVKTENRYMQTFMDKNSHEMLTHIVNLGDAIAKT
LRLLENNYYASCTTWNHNPSPNPN*
back to top

spliced messenger RNA

>Gchil2441.t1 ID=Gchil2441.t1|Name=Gchil2441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004400_pilon:972279..972803- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCTCGAAGGCGCGCCATAGCGTCGCGCGCCGCGTGATGACGTC
TCGCAGCCAGAGTCGCGCCGCCGCGCTCCCCCTCACGCACGACCCCACGC
CGCAGCGCACGGCGCCGACCGCGCGCGAGCTGCGCGAGAGCTACCACGAT
CGCCTGGACACCGAGATCGACCACGTGCTCACCGCCTTTCAGGACCTCGT
CGCCTCGTGCCAAATCAGTGACCGCCCCAGCAACGCGCGCGCCGAGTACC
AGACCCAAGTCGAGGCCTCCAACCTGGCCAACTCCGCCGACCATCTGCTC
AAGCTCATTGCCGACCTCAAGGTCGCTGTCGTCACCCAGAACCTCGCCGA
GGTCAAGACCGAGAACCGCTACATGCAGACCTTCATGGACAAGAACAGCC
ACGAAATGCTCACCCACATCGTCAATCTGGGCGACGCCATTGCCAAGACC
TTGCGCTTGTTGGAGAACAACTACTACGCCAGTTGCACCACATGGAATCA
CAATCCTTCTCCCAATCCAAATTAA
back to top

protein sequence of Gchil2441.t1

>Gchil2441.t1 ID=Gchil2441.t1|Name=Gchil2441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MALSKARHSVARRVMTSRSQSRAAALPLTHDPTPQRTAPTARELRESYHD
RLDTEIDHVLTAFQDLVASCQISDRPSNARAEYQTQVEASNLANSADHLL
KLIADLKVAVVTQNLAEVKTENRYMQTFMDKNSHEMLTHIVNLGDAIAKT
LRLLENNYYASCTTWNHNPSPNPN*
back to top

mRNA from alignment at tig00004400_pilon:972279..972803-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2441.t1 ID=Gchil2441.t1|Name=Gchil2441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004400_pilon:972279..972803- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTCTCGAAGGCGCGCCATAGCGTCGCGCGCCGCGTGATGACGTC
TCGCAGCCAGAGTCGCGCCGCCGCGCTCCCCCTCACGCACGACCCCACGC
CGCAGCGCACGGCGCCGACCGCGCGCGAGCTGCGCGAGAGCTACCACGAT
CGCCTGGACACCGAGATCGACCACGTGCTCACCGCCTTTCAGGACCTCGT
CGCCTCGTGCCAAATCAGTGACCGCCCCAGCAACGCGCGCGCCGAGTACC
AGACCCAAGTCGAGGCCTCCAACCTGGCCAACTCCGCCGACCATCTGCTC
AAGCTCATTGCCGACCTCAAGGTCGCTGTCGTCACCCAGAACCTCGCCGA
GGTCAAGACCGAGAACCGCTACATGCAGACCTTCATGGACAAGAACAGCC
ACGAAATGCTCACCCACATCGTCAATCTGGGCGACGCCATTGCCAAGACC
TTGCGCTTGTTGGAGAACAACTACTACGCCAGTTGCACCACATGGAATCA
CAATCCTTCTCCCAATCCAAATTAA
back to top

Coding sequence (CDS) from alignment at tig00004400_pilon:972279..972803-

>Gchil2441.t1 ID=Gchil2441.t1|Name=Gchil2441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00004400_pilon:972279..972803- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTCTCGAAGGCGCGCCATAGCGTCGCGCGCCGCGTGATGACGTC
TCGCAGCCAGAGTCGCGCCGCCGCGCTCCCCCTCACGCACGACCCCACGC
CGCAGCGCACGGCGCCGACCGCGCGCGAGCTGCGCGAGAGCTACCACGAT
CGCCTGGACACCGAGATCGACCACGTGCTCACCGCCTTTCAGGACCTCGT
CGCCTCGTGCCAAATCAGTGACCGCCCCAGCAACGCGCGCGCCGAGTACC
AGACCCAAGTCGAGGCCTCCAACCTGGCCAACTCCGCCGACCATCTGCTC
AAGCTCATTGCCGACCTCAAGGTCGCTGTCGTCACCCAGAACCTCGCCGA
GGTCAAGACCGAGAACCGCTACATGCAGACCTTCATGGACAAGAACAGCC
ACGAAATGCTCACCCACATCGTCAATCTGGGCGACGCCATTGCCAAGACC
TTGCGCTTGTTGGAGAACAACTACTACGCCAGTTGCACCACATGGAATCA
CAATCCTTCTCCCAATCCAAATTAA
back to top