Gchil2438.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2438.t1
Unique NameGchil2438.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:967919..968770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1089550.ATTH01000001_gene610
Preferred nameczcD
PFAMsCation_efflux,ZT_dimer
Max annot lvl976|Bacteroidetes
KEGG koko:K16264
KEGG TC2.A.4.1
Evalue2.88e-26
EggNOG OGsCOG1230@1|root,COG1230@2|Bacteria,4NIHB@976|Bacteroidetes,1FJWQ@1100069|Bacteroidetes Order II. Incertae sedis
DescriptionCation efflux family
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2438Gchil2438Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 967919..968770 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2438.t1.start1Gchil2438.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 967919..967921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2438.t1.CDS1Gchil2438.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 967919..968770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2438.t1.exon1Gchil2438.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 967919..968770 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2438.t1.stop1Gchil2438.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 968768..968770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2438.t1Gchil2438.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 967919..968770 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2438.t1 ID=Gchil2438.t1|Name=Gchil2438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=284bp
MVEALHTALDGLTVVISLISVVISRRDADKRFSYGYARAEVLSALLSVLA
LGLLCVKLFSTGVRRLWLISHGNVIKVDGKYVVIAEALTLFSNMSMASVL
ARGSNKKSLNLRALRAHVIADCIENVVVLMGGMLIWNFPNAAIVDPILTV
VIVALIVTMNVSICKETVAALMQAAPSGIIEGIAALVVKSNHVVEVRQLH
VWTLTSGCLVGSVVVSVDTEANSKDVKKNVKQVFKDFGVENVTVQIDEVQ
ERDEDREVDAGEHPGMVHGANGYGLVPGDDEIV*
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spliced messenger RNA

>Gchil2438.t1 ID=Gchil2438.t1|Name=Gchil2438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004400_pilon:967919..968770+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAGGCCCTACACACAGCGTTGGATGGTCTCACAGTTGTAATATC
GCTTATCTCCGTGGTCATATCGCGTCGCGATGCTGACAAGCGCTTTTCCT
ATGGGTATGCTCGCGCAGAGGTTTTGTCCGCGCTCCTGAGTGTGCTGGCT
CTTGGGCTGTTGTGCGTCAAGCTTTTCTCAACTGGTGTGCGACGTCTGTG
GCTTATTTCACACGGCAACGTGATTAAGGTGGATGGAAAGTACGTGGTGA
TTGCCGAGGCGCTAACGCTTTTTTCTAACATGTCCATGGCGTCGGTACTT
GCTCGTGGGTCGAACAAAAAGAGTCTTAACTTGCGTGCTTTGCGTGCCCA
TGTTATTGCCGACTGCATCGAGAATGTCGTTGTCTTGATGGGCGGCATGC
TCATCTGGAACTTTCCAAATGCTGCAATTGTCGATCCGATTTTAACTGTG
GTTATTGTGGCGTTAATCGTAACCATGAACGTCAGCATATGCAAAGAAAC
GGTTGCGGCATTGATGCAAGCGGCCCCATCAGGTATTATCGAAGGCATTG
CTGCACTTGTCGTCAAAAGCAACCACGTCGTTGAAGTACGGCAATTGCAT
GTGTGGACCTTGACGAGCGGTTGTCTTGTGGGGAGCGTTGTGGTTTCCGT
TGATACCGAGGCAAATTCGAAGGACGTGAAGAAGAACGTGAAGCAAGTGT
TCAAGGATTTTGGCGTGGAAAACGTCACTGTGCAAATAGATGAAGTTCAG
GAGAGAGATGAAGACCGTGAGGTGGATGCCGGGGAACACCCAGGAATGGT
TCATGGGGCGAACGGATATGGACTGGTTCCCGGTGATGATGAGATTGTAT
GA
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protein sequence of Gchil2438.t1

>Gchil2438.t1 ID=Gchil2438.t1|Name=Gchil2438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=284bp
MVEALHTALDGLTVVISLISVVISRRDADKRFSYGYARAEVLSALLSVLA
LGLLCVKLFSTGVRRLWLISHGNVIKVDGKYVVIAEALTLFSNMSMASVL
ARGSNKKSLNLRALRAHVIADCIENVVVLMGGMLIWNFPNAAIVDPILTV
VIVALIVTMNVSICKETVAALMQAAPSGIIEGIAALVVKSNHVVEVRQLH
VWTLTSGCLVGSVVVSVDTEANSKDVKKNVKQVFKDFGVENVTVQIDEVQ
ERDEDREVDAGEHPGMVHGANGYGLVPGDDEIV*
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mRNA from alignment at tig00004400_pilon:967919..968770+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2438.t1 ID=Gchil2438.t1|Name=Gchil2438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004400_pilon:967919..968770+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGAGGCCCTACACACAGCGTTGGATGGTCTCACAGTTGTAATATC
GCTTATCTCCGTGGTCATATCGCGTCGCGATGCTGACAAGCGCTTTTCCT
ATGGGTATGCTCGCGCAGAGGTTTTGTCCGCGCTCCTGAGTGTGCTGGCT
CTTGGGCTGTTGTGCGTCAAGCTTTTCTCAACTGGTGTGCGACGTCTGTG
GCTTATTTCACACGGCAACGTGATTAAGGTGGATGGAAAGTACGTGGTGA
TTGCCGAGGCGCTAACGCTTTTTTCTAACATGTCCATGGCGTCGGTACTT
GCTCGTGGGTCGAACAAAAAGAGTCTTAACTTGCGTGCTTTGCGTGCCCA
TGTTATTGCCGACTGCATCGAGAATGTCGTTGTCTTGATGGGCGGCATGC
TCATCTGGAACTTTCCAAATGCTGCAATTGTCGATCCGATTTTAACTGTG
GTTATTGTGGCGTTAATCGTAACCATGAACGTCAGCATATGCAAAGAAAC
GGTTGCGGCATTGATGCAAGCGGCCCCATCAGGTATTATCGAAGGCATTG
CTGCACTTGTCGTCAAAAGCAACCACGTCGTTGAAGTACGGCAATTGCAT
GTGTGGACCTTGACGAGCGGTTGTCTTGTGGGGAGCGTTGTGGTTTCCGT
TGATACCGAGGCAAATTCGAAGGACGTGAAGAAGAACGTGAAGCAAGTGT
TCAAGGATTTTGGCGTGGAAAACGTCACTGTGCAAATAGATGAAGTTCAG
GAGAGAGATGAAGACCGTGAGGTGGATGCCGGGGAACACCCAGGAATGGT
TCATGGGGCGAACGGATATGGACTGGTTCCCGGTGATGATGAGATTGTAT
GA
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Coding sequence (CDS) from alignment at tig00004400_pilon:967919..968770+

>Gchil2438.t1 ID=Gchil2438.t1|Name=Gchil2438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00004400_pilon:967919..968770+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGAGGCCCTACACACAGCGTTGGATGGTCTCACAGTTGTAATATC
GCTTATCTCCGTGGTCATATCGCGTCGCGATGCTGACAAGCGCTTTTCCT
ATGGGTATGCTCGCGCAGAGGTTTTGTCCGCGCTCCTGAGTGTGCTGGCT
CTTGGGCTGTTGTGCGTCAAGCTTTTCTCAACTGGTGTGCGACGTCTGTG
GCTTATTTCACACGGCAACGTGATTAAGGTGGATGGAAAGTACGTGGTGA
TTGCCGAGGCGCTAACGCTTTTTTCTAACATGTCCATGGCGTCGGTACTT
GCTCGTGGGTCGAACAAAAAGAGTCTTAACTTGCGTGCTTTGCGTGCCCA
TGTTATTGCCGACTGCATCGAGAATGTCGTTGTCTTGATGGGCGGCATGC
TCATCTGGAACTTTCCAAATGCTGCAATTGTCGATCCGATTTTAACTGTG
GTTATTGTGGCGTTAATCGTAACCATGAACGTCAGCATATGCAAAGAAAC
GGTTGCGGCATTGATGCAAGCGGCCCCATCAGGTATTATCGAAGGCATTG
CTGCACTTGTCGTCAAAAGCAACCACGTCGTTGAAGTACGGCAATTGCAT
GTGTGGACCTTGACGAGCGGTTGTCTTGTGGGGAGCGTTGTGGTTTCCGT
TGATACCGAGGCAAATTCGAAGGACGTGAAGAAGAACGTGAAGCAAGTGT
TCAAGGATTTTGGCGTGGAAAACGTCACTGTGCAAATAGATGAAGTTCAG
GAGAGAGATGAAGACCGTGAGGTGGATGCCGGGGAACACCCAGGAATGGT
TCATGGGGCGAACGGATATGGACTGGTTCCCGGTGATGATGAGATTGTAT
GA
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