Gchil2435.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2435.t1
Unique NameGchil2435.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:960824..961488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010695709.1
PFAMsNAP
Max annot lvl35493|Streptophyta
KEGG koko:K11290
GOsGO:0000724,GO:0000725,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0016444,GO:0033554,GO:0034641,GO:0042221,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
Evalue8.66e-05
EggNOG OGsKOG1508@1|root,KOG1508@2759|Eukaryota,37MTJ@33090|Viridiplantae,3GACK@35493|Streptophyta
DescriptionBelongs to the nucleosome assembly protein (NAP) family
COG categoryL
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2435Gchil2435Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 960824..961488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2435.t1Gchil2435.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 960824..961488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2435.t1.stop1Gchil2435.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 960824..960826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2435.t1.CDS1Gchil2435.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 960824..960865 -
Gchil2435.t1.CDS2Gchil2435.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 960958..961488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2435.t1.exon1Gchil2435.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 960824..960865 -
Gchil2435.t1.exon2Gchil2435.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 960958..961488 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2435.t1.intron1Gchil2435.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 960866..960957 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2435.t1.start1Gchil2435.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 961486..961488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2435.t1 ID=Gchil2435.t1|Name=Gchil2435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=191bp
MATSRSESQSSDQTSPPRSRSPSPPSNSAADADADADVDADASNTAHTQL
QLLLLGESISAAIEHQRRFSSPPPSPSLPVLYERRRALAARVQHFWLTVM
LSHPALTLLVSAADTRVLRRLEHVHVAERAATPTSFELSFFFAPECDAHT
FCATRTTDSPLACVTKRYAYSERCGRVFASGRVVPPSSDP*
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spliced messenger RNA

>Gchil2435.t1 ID=Gchil2435.t1|Name=Gchil2435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00004400_pilon:960824..961488- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCAGCCGATCCGAGTCCCAGAGCTCCGACCAAACGTCCCCCCC
GCGCTCGCGCTCCCCCTCGCCGCCGTCCAACTCCGCCGCCGATGCCGATG
CCGATGCCGACGTCGACGCCGATGCCTCCAACACCGCCCACACCCAACTG
CAGCTGTTGCTTCTCGGCGAGAGCATCTCGGCCGCCATCGAGCACCAGCG
GCGCTTCTCGTCTCCGCCGCCCTCGCCGTCGCTCCCGGTGCTGTACGAGC
GCCGCCGCGCGCTAGCCGCGCGCGTGCAGCACTTCTGGCTCACAGTGATG
CTAAGCCACCCGGCGCTCACGCTCCTGGTCAGCGCCGCCGACACCCGCGT
GTTGCGCCGTCTGGAGCACGTGCACGTGGCCGAGCGTGCAGCCACGCCCA
CTTCGTTTGAGTTGAGTTTCTTCTTCGCTCCCGAGTGTGATGCGCACACC
TTTTGCGCTACGCGCACCACCGACAGCCCATTGGCGTGCGTCACTAAGCG
CTACGCGTATTCGGAGCGTTGTGGGCGAGTGTTCGCATCTGGGCGAGTTG
TTCCGCCATCAAGTGATCCCTGA
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protein sequence of Gchil2435.t1

>Gchil2435.t1 ID=Gchil2435.t1|Name=Gchil2435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=191bp
MATSRSESQSSDQTSPPRSRSPSPPSNSAADADADADVDADASNTAHTQL
QLLLLGESISAAIEHQRRFSSPPPSPSLPVLYERRRALAARVQHFWLTVM
LSHPALTLLVSAADTRVLRRLEHVHVAERAATPTSFELSFFFAPECDAHT
FCATRTTDSPLACVTKRYAYSERCGRVFASGRVVPPSSDP*
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mRNA from alignment at tig00004400_pilon:960824..961488-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2435.t1 ID=Gchil2435.t1|Name=Gchil2435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=665bp|location=Sequence derived from alignment at tig00004400_pilon:960824..961488- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCAGCCGATCCGAGTCCCAGAGCTCCGACCAAACGTCCCCCCC
GCGCTCGCGCTCCCCCTCGCCGCCGTCCAACTCCGCCGCCGATGCCGATG
CCGATGCCGACGTCGACGCCGATGCCTCCAACACCGCCCACACCCAACTG
CAGCTGTTGCTTCTCGGCGAGAGCATCTCGGCCGCCATCGAGCACCAGCG
GCGCTTCTCGTCTCCGCCGCCCTCGCCGTCGCTCCCGGTGCTGTACGAGC
GCCGCCGCGCGCTAGCCGCGCGCGTGCAGCACTTCTGGCTCACAGTGATG
CTAAGCCACCCGGCGCTCACGCTCCTGGTCAGCGCCGCCGACACCCGCGT
GTTGCGCCGTCTGGAGCACGTGCACGTGGCCGAGCGTGCAGCCACGCCCA
CTTCGTTTGAGTTGAGTTTCTTCTTCGCTCCCGAGTGTGATGCGCACACC
TTTTGCGCTACGCGCACCACCGACAGCCCATTGGCGTGCGTCACTAAGCG
CTACGCGTATTCGGAGCGTTGTGGGCGAGTGGTGAGCAACCACACGCCGG
TGCAACTTGTCGCTGTCGACGCCGACGCGTCGCGTCCCTTTTGCGCGTGG
CTGTTGCATGACACGCGCGATAGTTCGCATCTGGGCGAGTTGTTCCGCCA
TCAAGTGATCCCTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:960824..961488-

>Gchil2435.t1 ID=Gchil2435.t1|Name=Gchil2435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00004400_pilon:960824..961488- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCAGCCGATCCGAGTCCCAGAGCTCCGACCAAACGTCCCCCCC
GCGCTCGCGCTCCCCCTCGCCGCCGTCCAACTCCGCCGCCGATGCCGATG
CCGATGCCGACGTCGACGCCGATGCCTCCAACACCGCCCACACCCAACTG
CAGCTGTTGCTTCTCGGCGAGAGCATCTCGGCCGCCATCGAGCACCAGCG
GCGCTTCTCGTCTCCGCCGCCCTCGCCGTCGCTCCCGGTGCTGTACGAGC
GCCGCCGCGCGCTAGCCGCGCGCGTGCAGCACTTCTGGCTCACAGTGATG
CTAAGCCACCCGGCGCTCACGCTCCTGGTCAGCGCCGCCGACACCCGCGT
GTTGCGCCGTCTGGAGCACGTGCACGTGGCCGAGCGTGCAGCCACGCCCA
CTTCGTTTGAGTTGAGTTTCTTCTTCGCTCCCGAGTGTGATGCGCACACC
TTTTGCGCTACGCGCACCACCGACAGCCCATTGGCGTGCGTCACTAAGCG
CTACGCGTATTCGGAGCGTTGTGGGCGAGTGTTCGCATCTGGGCGAGTTG
TTCCGCCATCAAGTGATCCCTGA
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