Gchil2426.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2426.t1
Unique Name	Gchil2426.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:851165..852766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	272134.KB731324_gene3457
Preferred name	gatA
PFAMs	Amidase
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00010
KEGG ko	ko:K02433
KEGG Reaction	R03905,R04212
KEGG Pathway	ko00970,ko01100,map00970,map01100
Evalue	1.28e-172
EggNOG OGs	COG0154@1\|root,COG0154@2\|Bacteria,1G0HS@1117\|Cyanobacteria,1H6YQ@1150\|Oscillatoriales
EC	6.3.5.6,6.3.5.7
Description	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2426	Gchil2426	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 851165..852766 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2426.t1.start1	Gchil2426.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 851165..851167 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2426.t1.CDS1	Gchil2426.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 851165..852766 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2426.t1.exon1	Gchil2426.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 851165..852766 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2426.t1.stop1	Gchil2426.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 852764..852766 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2426.t1	Gchil2426.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 851165..852766 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:851165..852766+
coding sequence from alignment at tig00004400_pilon:851165..852766+

mRNA sequence

>Gchil2426.t1 ID=Gchil2426.t1|Name=Gchil2426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp
MATTFITSTNSLSRFRFSHRTSFPSRSQHTKSLRNVTRALASHSIRDIVR
SIRSRDTSACQVLNQSLSRIESIEPLVNAFITIDVEHAQAQATRIDKHIA
QGKDPGPLAGVPIAIKDNLSTKGLPTTAASRILDGFVPAYNATAVQRLVD
AGALIVGKTNLDEFGMGGSTENSAYATTRNPWDLSCVPGGSSGGSAVAVA
AGMCPIALGSDTGGSIRQPASFCGVTGFKPSYGRVSRHGLFSFGSSLDTV
GPICRSAQDAALIMQIIAGSDGMDSAASTTSVPSYADLLEGDLSNFRIAV
VSESLSFGVDTEVAQAVQEALGVFTSLGASVEMVSVPLLSVAAPAYYVIT
NSEASANLARYDGVRYGVRQHDAKTSSDMYAESRASGFGWEVKRRIMGGT
YALSSGYYDAYYCQAQRVRTALTNSIKDKFAEGFDILITPVAPNPAFGIG
EKISDPVWMMLNDICTVPANLAGLPAISVPCGRTMKNLPIGLQIIGSFMK
DELVLKAAHAYQQQTAHHEQLAEPVAGNVAVSV*

spliced messenger RNA

>Gchil2426.t1 ID=Gchil2426.t1|Name=Gchil2426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00004400_pilon:851165..852766+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCACATTCATCACTTCAACAAACTCCCTCTCTCGTTTTCGCTT
CTCACACCGCACCTCGTTTCCCAGTAGGTCTCAACACACGAAATCGCTCC
GAAACGTGACGCGCGCCCTTGCTTCTCATTCAATCAGGGACATAGTCAGA
TCCATTCGATCTCGTGACACATCCGCGTGCCAAGTCCTCAACCAATCGCT
CTCTCGAATTGAATCTATTGAGCCGCTCGTCAATGCTTTCATTACCATTG
ACGTGGAGCACGCACAAGCGCAAGCCACGAGAATAGATAAGCACATTGCC
CAGGGGAAAGATCCTGGACCGCTAGCAGGCGTTCCGATTGCCATCAAGGA
CAATCTCTCCACAAAAGGTCTACCGACCACAGCTGCGAGCCGCATTCTCG
ACGGCTTTGTCCCTGCGTACAATGCCACTGCGGTGCAGAGACTTGTCGAT
GCTGGCGCTCTCATTGTAGGAAAGACCAATTTGGACGAGTTTGGTATGGG
AGGTTCGACGGAAAACTCAGCCTATGCGACCACGCGAAATCCATGGGATC
TTTCTTGCGTGCCTGGCGGCTCGTCGGGGGGTTCCGCTGTAGCCGTGGCC
GCTGGTATGTGCCCAATTGCGCTCGGTTCAGATACGGGTGGAAGCATTCG
ACAACCAGCATCATTCTGCGGGGTAACGGGTTTCAAGCCGTCCTATGGTC
GCGTAAGCCGTCATGGCCTTTTTTCGTTCGGCTCTTCATTGGATACTGTT
GGGCCGATATGCCGTAGCGCCCAAGATGCTGCTCTGATCATGCAGATTAT
AGCAGGGTCAGATGGGATGGACTCAGCTGCGAGCACCACTTCTGTTCCAT
CTTATGCAGATCTCTTGGAGGGGGATCTCTCCAACTTTCGAATTGCGGTA
GTCAGTGAGTCTTTGTCTTTTGGAGTAGATACAGAAGTTGCGCAAGCGGT
GCAGGAAGCGTTGGGTGTCTTCACGAGTCTTGGAGCTAGCGTTGAAATGG
TGTCAGTACCGTTGCTATCGGTGGCCGCACCAGCGTACTATGTAATAACA
AACTCTGAGGCGTCTGCCAATTTAGCCAGGTATGATGGTGTGAGATACGG
CGTGCGTCAACACGATGCGAAGACCTCATCGGATATGTACGCGGAGTCAC
GTGCCTCTGGTTTCGGATGGGAGGTGAAGCGCCGCATCATGGGAGGCACA
TACGCCTTGTCAAGCGGATACTATGATGCTTATTACTGCCAAGCTCAGCG
GGTGAGAACAGCGCTTACCAACTCTATAAAGGACAAGTTCGCTGAGGGTT
TCGATATTCTAATTACCCCTGTGGCACCCAACCCCGCGTTTGGTATTGGA
GAGAAGATATCGGACCCTGTTTGGATGATGCTGAACGACATCTGTACTGT
TCCGGCGAACCTTGCCGGACTTCCGGCCATCAGCGTGCCTTGCGGAAGGA
CTATGAAGAACTTGCCGATTGGGCTGCAAATCATCGGTTCATTCATGAAA
GATGAACTTGTGTTGAAGGCAGCCCATGCGTATCAACAACAGACTGCACA
TCATGAGCAATTGGCAGAACCAGTGGCAGGCAACGTCGCGGTATCGGTGT
AA

protein sequence of Gchil2426.t1

>Gchil2426.t1 ID=Gchil2426.t1|Name=Gchil2426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=534bp
MATTFITSTNSLSRFRFSHRTSFPSRSQHTKSLRNVTRALASHSIRDIVR
SIRSRDTSACQVLNQSLSRIESIEPLVNAFITIDVEHAQAQATRIDKHIA
QGKDPGPLAGVPIAIKDNLSTKGLPTTAASRILDGFVPAYNATAVQRLVD
AGALIVGKTNLDEFGMGGSTENSAYATTRNPWDLSCVPGGSSGGSAVAVA
AGMCPIALGSDTGGSIRQPASFCGVTGFKPSYGRVSRHGLFSFGSSLDTV
GPICRSAQDAALIMQIIAGSDGMDSAASTTSVPSYADLLEGDLSNFRIAV
VSESLSFGVDTEVAQAVQEALGVFTSLGASVEMVSVPLLSVAAPAYYVIT
NSEASANLARYDGVRYGVRQHDAKTSSDMYAESRASGFGWEVKRRIMGGT
YALSSGYYDAYYCQAQRVRTALTNSIKDKFAEGFDILITPVAPNPAFGIG
EKISDPVWMMLNDICTVPANLAGLPAISVPCGRTMKNLPIGLQIIGSFMK
DELVLKAAHAYQQQTAHHEQLAEPVAGNVAVSV*

mRNA from alignment at tig00004400_pilon:851165..852766+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2426.t1 ID=Gchil2426.t1|Name=Gchil2426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00004400_pilon:851165..852766+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACCACATTCATCACTTCAACAAACTCCCTCTCTCGTTTTCGCTT
CTCACACCGCACCTCGTTTCCCAGTAGGTCTCAACACACGAAATCGCTCC
GAAACGTGACGCGCGCCCTTGCTTCTCATTCAATCAGGGACATAGTCAGA
TCCATTCGATCTCGTGACACATCCGCGTGCCAAGTCCTCAACCAATCGCT
CTCTCGAATTGAATCTATTGAGCCGCTCGTCAATGCTTTCATTACCATTG
ACGTGGAGCACGCACAAGCGCAAGCCACGAGAATAGATAAGCACATTGCC
CAGGGGAAAGATCCTGGACCGCTAGCAGGCGTTCCGATTGCCATCAAGGA
CAATCTCTCCACAAAAGGTCTACCGACCACAGCTGCGAGCCGCATTCTCG
ACGGCTTTGTCCCTGCGTACAATGCCACTGCGGTGCAGAGACTTGTCGAT
GCTGGCGCTCTCATTGTAGGAAAGACCAATTTGGACGAGTTTGGTATGGG
AGGTTCGACGGAAAACTCAGCCTATGCGACCACGCGAAATCCATGGGATC
TTTCTTGCGTGCCTGGCGGCTCGTCGGGGGGTTCCGCTGTAGCCGTGGCC
GCTGGTATGTGCCCAATTGCGCTCGGTTCAGATACGGGTGGAAGCATTCG
ACAACCAGCATCATTCTGCGGGGTAACGGGTTTCAAGCCGTCCTATGGTC
GCGTAAGCCGTCATGGCCTTTTTTCGTTCGGCTCTTCATTGGATACTGTT
GGGCCGATATGCCGTAGCGCCCAAGATGCTGCTCTGATCATGCAGATTAT
AGCAGGGTCAGATGGGATGGACTCAGCTGCGAGCACCACTTCTGTTCCAT
CTTATGCAGATCTCTTGGAGGGGGATCTCTCCAACTTTCGAATTGCGGTA
GTCAGTGAGTCTTTGTCTTTTGGAGTAGATACAGAAGTTGCGCAAGCGGT
GCAGGAAGCGTTGGGTGTCTTCACGAGTCTTGGAGCTAGCGTTGAAATGG
TGTCAGTACCGTTGCTATCGGTGGCCGCACCAGCGTACTATGTAATAACA
AACTCTGAGGCGTCTGCCAATTTAGCCAGGTATGATGGTGTGAGATACGG
CGTGCGTCAACACGATGCGAAGACCTCATCGGATATGTACGCGGAGTCAC
GTGCCTCTGGTTTCGGATGGGAGGTGAAGCGCCGCATCATGGGAGGCACA
TACGCCTTGTCAAGCGGATACTATGATGCTTATTACTGCCAAGCTCAGCG
GGTGAGAACAGCGCTTACCAACTCTATAAAGGACAAGTTCGCTGAGGGTT
TCGATATTCTAATTACCCCTGTGGCACCCAACCCCGCGTTTGGTATTGGA
GAGAAGATATCGGACCCTGTTTGGATGATGCTGAACGACATCTGTACTGT
TCCGGCGAACCTTGCCGGACTTCCGGCCATCAGCGTGCCTTGCGGAAGGA
CTATGAAGAACTTGCCGATTGGGCTGCAAATCATCGGTTCATTCATGAAA
GATGAACTTGTGTTGAAGGCAGCCCATGCGTATCAACAACAGACTGCACA
TCATGAGCAATTGGCAGAACCAGTGGCAGGCAACGTCGCGGTATCGGTGT
AA

Coding sequence (CDS) from alignment at tig00004400_pilon:851165..852766+

>Gchil2426.t1 ID=Gchil2426.t1|Name=Gchil2426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00004400_pilon:851165..852766+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACCACATTCATCACTTCAACAAACTCCCTCTCTCGTTTTCGCTT
CTCACACCGCACCTCGTTTCCCAGTAGGTCTCAACACACGAAATCGCTCC
GAAACGTGACGCGCGCCCTTGCTTCTCATTCAATCAGGGACATAGTCAGA
TCCATTCGATCTCGTGACACATCCGCGTGCCAAGTCCTCAACCAATCGCT
CTCTCGAATTGAATCTATTGAGCCGCTCGTCAATGCTTTCATTACCATTG
ACGTGGAGCACGCACAAGCGCAAGCCACGAGAATAGATAAGCACATTGCC
CAGGGGAAAGATCCTGGACCGCTAGCAGGCGTTCCGATTGCCATCAAGGA
CAATCTCTCCACAAAAGGTCTACCGACCACAGCTGCGAGCCGCATTCTCG
ACGGCTTTGTCCCTGCGTACAATGCCACTGCGGTGCAGAGACTTGTCGAT
GCTGGCGCTCTCATTGTAGGAAAGACCAATTTGGACGAGTTTGGTATGGG
AGGTTCGACGGAAAACTCAGCCTATGCGACCACGCGAAATCCATGGGATC
TTTCTTGCGTGCCTGGCGGCTCGTCGGGGGGTTCCGCTGTAGCCGTGGCC
GCTGGTATGTGCCCAATTGCGCTCGGTTCAGATACGGGTGGAAGCATTCG
ACAACCAGCATCATTCTGCGGGGTAACGGGTTTCAAGCCGTCCTATGGTC
GCGTAAGCCGTCATGGCCTTTTTTCGTTCGGCTCTTCATTGGATACTGTT
GGGCCGATATGCCGTAGCGCCCAAGATGCTGCTCTGATCATGCAGATTAT
AGCAGGGTCAGATGGGATGGACTCAGCTGCGAGCACCACTTCTGTTCCAT
CTTATGCAGATCTCTTGGAGGGGGATCTCTCCAACTTTCGAATTGCGGTA
GTCAGTGAGTCTTTGTCTTTTGGAGTAGATACAGAAGTTGCGCAAGCGGT
GCAGGAAGCGTTGGGTGTCTTCACGAGTCTTGGAGCTAGCGTTGAAATGG
TGTCAGTACCGTTGCTATCGGTGGCCGCACCAGCGTACTATGTAATAACA
AACTCTGAGGCGTCTGCCAATTTAGCCAGGTATGATGGTGTGAGATACGG
CGTGCGTCAACACGATGCGAAGACCTCATCGGATATGTACGCGGAGTCAC
GTGCCTCTGGTTTCGGATGGGAGGTGAAGCGCCGCATCATGGGAGGCACA
TACGCCTTGTCAAGCGGATACTATGATGCTTATTACTGCCAAGCTCAGCG
GGTGAGAACAGCGCTTACCAACTCTATAAAGGACAAGTTCGCTGAGGGTT
TCGATATTCTAATTACCCCTGTGGCACCCAACCCCGCGTTTGGTATTGGA
GAGAAGATATCGGACCCTGTTTGGATGATGCTGAACGACATCTGTACTGT
TCCGGCGAACCTTGCCGGACTTCCGGCCATCAGCGTGCCTTGCGGAAGGA
CTATGAAGAACTTGCCGATTGGGCTGCAAATCATCGGTTCATTCATGAAA
GATGAACTTGTGTTGAAGGCAGCCCATGCGTATCAACAACAGACTGCACA
TCATGAGCAATTGGCAGAACCAGTGGCAGGCAACGTCGCGGTATCGGTGT
AA