Gchil2424.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2424.t1
Unique NameGchil2424.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length545
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:847114..848748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog414996.IL38_17940
PFAMsInhibitor_I9,PKD,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue1.25e-44
EggNOG OGsCOG1404@1|root,COG3291@1|root,COG1404@2|Bacteria,COG3291@2|Bacteria,2GJYH@201174|Actinobacteria,408K9@622450|Actinopolysporales
DescriptionRepeats in polycystic kidney disease 1 (PKD1) and other proteins
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2424Gchil2424Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 847114..848748 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2424.t1.stop1Gchil2424.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 847114..847116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2424.t1.CDS1Gchil2424.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 847114..848748 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2424.t1.exon1Gchil2424.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 847114..848748 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2424.t1.start1Gchil2424.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 848746..848748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2424.t1Gchil2424.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 847114..848748 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2424.t1 ID=Gchil2424.t1|Name=Gchil2424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=545bp
MRTLAILFAALIGVAHSISRGYIRKRFIVSLKPESECDSTCVEAVKRSIV
NLVYEEKPARCQVLRHNVHLGMITVRCGSVRSDTTAMLVKNELEQIEGVM
YASQDAILTTTPTDSEAQYVDTTGSSSPGFVPISRKVVPQGFAPYNWGLD
RIDEEDADLDYFSADYSCYPKMGKGVRVFVIDTGCRTDHSEFVNLDITTE
KAPGSKFSSGNDDNGHGTHIAGVIGGANVGIARNTSVTCIKAFDHRGNGM
ATDTINAVEYILEEKAKNTSVPFIVNLSYSALTGYTTTPLDEIVYASSAR
GIIFVVSAGNSAVNSCFFSPSKAKEAFTVTASTRHDSLEVDSNIGPCVEF
IAPGHEILSASIDSPTDYDFMNGTSMATPHVVGLSALVLAENMHLQKVPE
IVRAALYEKLLSRTADVANFLMPLMHVECSESQSEVSSRRSGNKGTLSPR
DEELSPDASAEASVEPFETEEPSAEGLITSLEPENEPATPLTFSTSSSEG
TQKDILIGTTTIPKKRNRNNHETDIMLQLMQMLQDSGLGFDSVE*
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spliced messenger RNA

>Gchil2424.t1 ID=Gchil2424.t1|Name=Gchil2424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00004400_pilon:847114..848748- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGACTCTAGCTATACTCTTCGCGGCTCTTATTGGAGTCGCCCACTC
TATATCTAGAGGATATATTCGTAAGCGTTTCATTGTTTCCCTTAAACCAG
AGAGCGAGTGTGACAGCACGTGCGTTGAGGCCGTTAAGAGGAGCATTGTC
AACTTAGTATACGAAGAAAAACCTGCTCGGTGTCAAGTTCTTCGACACAA
TGTACACTTGGGCATGATCACCGTTCGCTGCGGTTCAGTTCGCAGTGATA
CAACGGCAATGCTTGTGAAGAATGAACTGGAACAGATTGAGGGTGTTATG
TATGCATCTCAAGATGCCATTCTTACCACTACACCAACCGATTCAGAGGC
ACAATATGTCGATACAACTGGTTCTAGTAGCCCCGGGTTTGTTCCAATTT
CAAGAAAAGTCGTACCACAAGGCTTTGCTCCTTACAACTGGGGATTGGAT
CGCATCGATGAGGAAGATGCAGACCTGGATTACTTCTCGGCGGACTATTC
ATGCTATCCAAAAATGGGAAAGGGAGTTCGTGTGTTCGTAATTGACACAG
GGTGTCGGACGGACCATAGCGAGTTTGTCAATCTCGATATCACTACGGAG
AAAGCGCCCGGAAGCAAGTTCTCTTCTGGCAACGACGACAACGGTCACGG
AACCCATATCGCGGGTGTAATTGGTGGAGCAAATGTTGGCATTGCTAGAA
ACACTTCTGTTACTTGTATTAAGGCTTTTGACCACCGTGGCAATGGAATG
GCAACAGACACAATCAATGCGGTCGAATACATTCTGGAGGAGAAAGCTAA
GAATACTTCTGTTCCATTCATAGTGAATTTGAGTTACTCTGCACTTACAG
GCTATACGACAACTCCTCTTGACGAGATTGTGTATGCTTCTTCGGCTCGC
GGAATCATTTTCGTTGTTTCTGCGGGCAATTCTGCCGTGAACTCTTGCTT
CTTCAGTCCGTCAAAGGCAAAAGAAGCATTTACGGTAACGGCTAGCACCA
GACACGATTCATTGGAAGTGGACAGTAATATCGGCCCATGTGTTGAGTTC
ATCGCACCAGGACATGAGATCTTAAGCGCTAGCATCGACTCTCCCACGGA
TTATGACTTTATGAACGGAACTTCTATGGCCACACCTCATGTGGTGGGTC
TTTCCGCACTTGTACTTGCAGAAAATATGCATCTGCAAAAAGTTCCAGAG
ATTGTGCGAGCAGCTCTGTACGAAAAGCTTCTCTCACGAACTGCCGATGT
TGCTAATTTCCTCATGCCTCTAATGCACGTTGAGTGTTCTGAATCGCAGA
GTGAAGTGAGCTCCCGTCGGTCTGGTAATAAGGGAACGCTCTCACCAAGA
GATGAAGAGCTATCGCCGGACGCATCGGCAGAGGCTTCAGTGGAACCATT
TGAAACGGAGGAACCGTCGGCAGAAGGTTTGATCACTTCCTTAGAGCCTG
AAAACGAGCCTGCTACACCGCTTACGTTCTCAACATCATCATCCGAAGGA
ACGCAGAAAGACATTTTGATTGGTACAACCACTATACCTAAGAAACGCAA
CCGGAACAACCATGAAACAGATATTATGCTACAATTGATGCAAATGCTTC
AAGACAGCGGGTTGGGTTTCGACTCCGTCGAATAG
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protein sequence of Gchil2424.t1

>Gchil2424.t1 ID=Gchil2424.t1|Name=Gchil2424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=545bp
MRTLAILFAALIGVAHSISRGYIRKRFIVSLKPESECDSTCVEAVKRSIV
NLVYEEKPARCQVLRHNVHLGMITVRCGSVRSDTTAMLVKNELEQIEGVM
YASQDAILTTTPTDSEAQYVDTTGSSSPGFVPISRKVVPQGFAPYNWGLD
RIDEEDADLDYFSADYSCYPKMGKGVRVFVIDTGCRTDHSEFVNLDITTE
KAPGSKFSSGNDDNGHGTHIAGVIGGANVGIARNTSVTCIKAFDHRGNGM
ATDTINAVEYILEEKAKNTSVPFIVNLSYSALTGYTTTPLDEIVYASSAR
GIIFVVSAGNSAVNSCFFSPSKAKEAFTVTASTRHDSLEVDSNIGPCVEF
IAPGHEILSASIDSPTDYDFMNGTSMATPHVVGLSALVLAENMHLQKVPE
IVRAALYEKLLSRTADVANFLMPLMHVECSESQSEVSSRRSGNKGTLSPR
DEELSPDASAEASVEPFETEEPSAEGLITSLEPENEPATPLTFSTSSSEG
TQKDILIGTTTIPKKRNRNNHETDIMLQLMQMLQDSGLGFDSVE*
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mRNA from alignment at tig00004400_pilon:847114..848748-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2424.t1 ID=Gchil2424.t1|Name=Gchil2424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00004400_pilon:847114..848748- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGACTCTAGCTATACTCTTCGCGGCTCTTATTGGAGTCGCCCACTC
TATATCTAGAGGATATATTCGTAAGCGTTTCATTGTTTCCCTTAAACCAG
AGAGCGAGTGTGACAGCACGTGCGTTGAGGCCGTTAAGAGGAGCATTGTC
AACTTAGTATACGAAGAAAAACCTGCTCGGTGTCAAGTTCTTCGACACAA
TGTACACTTGGGCATGATCACCGTTCGCTGCGGTTCAGTTCGCAGTGATA
CAACGGCAATGCTTGTGAAGAATGAACTGGAACAGATTGAGGGTGTTATG
TATGCATCTCAAGATGCCATTCTTACCACTACACCAACCGATTCAGAGGC
ACAATATGTCGATACAACTGGTTCTAGTAGCCCCGGGTTTGTTCCAATTT
CAAGAAAAGTCGTACCACAAGGCTTTGCTCCTTACAACTGGGGATTGGAT
CGCATCGATGAGGAAGATGCAGACCTGGATTACTTCTCGGCGGACTATTC
ATGCTATCCAAAAATGGGAAAGGGAGTTCGTGTGTTCGTAATTGACACAG
GGTGTCGGACGGACCATAGCGAGTTTGTCAATCTCGATATCACTACGGAG
AAAGCGCCCGGAAGCAAGTTCTCTTCTGGCAACGACGACAACGGTCACGG
AACCCATATCGCGGGTGTAATTGGTGGAGCAAATGTTGGCATTGCTAGAA
ACACTTCTGTTACTTGTATTAAGGCTTTTGACCACCGTGGCAATGGAATG
GCAACAGACACAATCAATGCGGTCGAATACATTCTGGAGGAGAAAGCTAA
GAATACTTCTGTTCCATTCATAGTGAATTTGAGTTACTCTGCACTTACAG
GCTATACGACAACTCCTCTTGACGAGATTGTGTATGCTTCTTCGGCTCGC
GGAATCATTTTCGTTGTTTCTGCGGGCAATTCTGCCGTGAACTCTTGCTT
CTTCAGTCCGTCAAAGGCAAAAGAAGCATTTACGGTAACGGCTAGCACCA
GACACGATTCATTGGAAGTGGACAGTAATATCGGCCCATGTGTTGAGTTC
ATCGCACCAGGACATGAGATCTTAAGCGCTAGCATCGACTCTCCCACGGA
TTATGACTTTATGAACGGAACTTCTATGGCCACACCTCATGTGGTGGGTC
TTTCCGCACTTGTACTTGCAGAAAATATGCATCTGCAAAAAGTTCCAGAG
ATTGTGCGAGCAGCTCTGTACGAAAAGCTTCTCTCACGAACTGCCGATGT
TGCTAATTTCCTCATGCCTCTAATGCACGTTGAGTGTTCTGAATCGCAGA
GTGAAGTGAGCTCCCGTCGGTCTGGTAATAAGGGAACGCTCTCACCAAGA
GATGAAGAGCTATCGCCGGACGCATCGGCAGAGGCTTCAGTGGAACCATT
TGAAACGGAGGAACCGTCGGCAGAAGGTTTGATCACTTCCTTAGAGCCTG
AAAACGAGCCTGCTACACCGCTTACGTTCTCAACATCATCATCCGAAGGA
ACGCAGAAAGACATTTTGATTGGTACAACCACTATACCTAAGAAACGCAA
CCGGAACAACCATGAAACAGATATTATGCTACAATTGATGCAAATGCTTC
AAGACAGCGGGTTGGGTTTCGACTCCGTCGAATAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:847114..848748-

>Gchil2424.t1 ID=Gchil2424.t1|Name=Gchil2424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1635bp|location=Sequence derived from alignment at tig00004400_pilon:847114..848748- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGACTCTAGCTATACTCTTCGCGGCTCTTATTGGAGTCGCCCACTC
TATATCTAGAGGATATATTCGTAAGCGTTTCATTGTTTCCCTTAAACCAG
AGAGCGAGTGTGACAGCACGTGCGTTGAGGCCGTTAAGAGGAGCATTGTC
AACTTAGTATACGAAGAAAAACCTGCTCGGTGTCAAGTTCTTCGACACAA
TGTACACTTGGGCATGATCACCGTTCGCTGCGGTTCAGTTCGCAGTGATA
CAACGGCAATGCTTGTGAAGAATGAACTGGAACAGATTGAGGGTGTTATG
TATGCATCTCAAGATGCCATTCTTACCACTACACCAACCGATTCAGAGGC
ACAATATGTCGATACAACTGGTTCTAGTAGCCCCGGGTTTGTTCCAATTT
CAAGAAAAGTCGTACCACAAGGCTTTGCTCCTTACAACTGGGGATTGGAT
CGCATCGATGAGGAAGATGCAGACCTGGATTACTTCTCGGCGGACTATTC
ATGCTATCCAAAAATGGGAAAGGGAGTTCGTGTGTTCGTAATTGACACAG
GGTGTCGGACGGACCATAGCGAGTTTGTCAATCTCGATATCACTACGGAG
AAAGCGCCCGGAAGCAAGTTCTCTTCTGGCAACGACGACAACGGTCACGG
AACCCATATCGCGGGTGTAATTGGTGGAGCAAATGTTGGCATTGCTAGAA
ACACTTCTGTTACTTGTATTAAGGCTTTTGACCACCGTGGCAATGGAATG
GCAACAGACACAATCAATGCGGTCGAATACATTCTGGAGGAGAAAGCTAA
GAATACTTCTGTTCCATTCATAGTGAATTTGAGTTACTCTGCACTTACAG
GCTATACGACAACTCCTCTTGACGAGATTGTGTATGCTTCTTCGGCTCGC
GGAATCATTTTCGTTGTTTCTGCGGGCAATTCTGCCGTGAACTCTTGCTT
CTTCAGTCCGTCAAAGGCAAAAGAAGCATTTACGGTAACGGCTAGCACCA
GACACGATTCATTGGAAGTGGACAGTAATATCGGCCCATGTGTTGAGTTC
ATCGCACCAGGACATGAGATCTTAAGCGCTAGCATCGACTCTCCCACGGA
TTATGACTTTATGAACGGAACTTCTATGGCCACACCTCATGTGGTGGGTC
TTTCCGCACTTGTACTTGCAGAAAATATGCATCTGCAAAAAGTTCCAGAG
ATTGTGCGAGCAGCTCTGTACGAAAAGCTTCTCTCACGAACTGCCGATGT
TGCTAATTTCCTCATGCCTCTAATGCACGTTGAGTGTTCTGAATCGCAGA
GTGAAGTGAGCTCCCGTCGGTCTGGTAATAAGGGAACGCTCTCACCAAGA
GATGAAGAGCTATCGCCGGACGCATCGGCAGAGGCTTCAGTGGAACCATT
TGAAACGGAGGAACCGTCGGCAGAAGGTTTGATCACTTCCTTAGAGCCTG
AAAACGAGCCTGCTACACCGCTTACGTTCTCAACATCATCATCCGAAGGA
ACGCAGAAAGACATTTTGATTGGTACAACCACTATACCTAAGAAACGCAA
CCGGAACAACCATGAAACAGATATTATGCTACAATTGATGCAAATGCTTC
AAGACAGCGGGTTGGGTTTCGACTCCGTCGAATAG
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