Gchil2420.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2420.t1
Unique NameGchil2420.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:838801..840138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ252CT
Preferred nameNIT2
PFAMsCN_hydrolase
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00021,RC00053,RC00315,RC00325,RC00617,RC00959,RC02811
KEGG koko:K00797,ko:K01501,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348,R00540,R01887,R01920,R02869,R03093,R03542,R05591,R07855,R08359
KEGG Pathwayko00250,ko00270,ko00330,ko00380,ko00410,ko00460,ko00480,ko00627,ko00643,ko00910,ko01100,ko01120,map00250,map00270,map00330,map00380,map00410,map00460,map00480,map00627,map00643,map00910,map01100,map01120
KEGG ModuleM00034,M00133
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006107,GO:0006108,GO:0006520,GO:0006528,GO:0006541,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009064,GO:0009066,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0012505,GO:0015630,GO:0016192,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032787,GO:0032940,GO:0034641,GO:0034774,GO:0035580,GO:0036230,GO:0042119,GO:0042221,GO:0042581,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046872,GO:0046903,GO:0046914,GO:0050152,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0060205,GO:0070013,GO:0070820,GO:0070887,GO:0071704,GO:0097237,GO:0097708,GO:0098754,GO:0099503,GO:1901564,GO:1901605,GO:1904724,GO:1990748
Evalue6.67e-105
EggNOG OGsCOG0388@1|root,KOG0806@2759|Eukaryota
EC2.5.1.16,3.5.1.3,3.5.5.1
Descriptionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
COG categoryDU
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2420Gchil2420Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 838801..840138 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2420.t1.start1Gchil2420.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 838801..838803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2420.t1.CDS1Gchil2420.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 838801..840138 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2420.t1.exon1Gchil2420.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 838801..840138 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2420.t1.stop1Gchil2420.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 840136..840138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2420.t1Gchil2420.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 838801..840138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2420.t1 ID=Gchil2420.t1|Name=Gchil2420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=446bp
MISRSSCSKMSTDEVFLSFVKDKNTNNAHVFLMHNRALRCPRCSSKITSK
PSNSAIFRLIFLRAIRPSSTAAVGIRHSMIFPAMKPLSLATQTYHLTRQS
YLMPRLGTAFAFLRNSFTRPFTSHGLQSSRISSVSQQQHCNVCHSYSRSY
AMSAHSQMFKLALCQMHVTADKEANLAKARDFLRRAKEADAKIAVLPECF
QCPYDTTCFRSYSESLPEPPYPVTSRHESPSLTMLQDIALETGMYIVGGS
VPEISEDKVYNTSMTVSPAGELIAKHRKAHLFDIDVPGGITFKESDALTA
GEKATAFKVPELSLTAGVAICYDMRFPELAMVQARNMKASLLIYPGAFNM
TTGPAHWELLIRARALDNQVFVAACSPARATSGDGYKAWGHSMVVDPWGK
IVAATEEKESVVVAEIDLSRVETVRKAIPTRRQRRTDLYTLEYLK*
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spliced messenger RNA

>Gchil2420.t1 ID=Gchil2420.t1|Name=Gchil2420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00004400_pilon:838801..840138+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAGCCGGTCATCATGTTCCAAGATGTCAACAGATGAGGTGTTCTT
GTCGTTCGTTAAGGACAAGAACACCAACAACGCGCACGTGTTCTTGATGC
ACAACAGGGCTCTGCGATGCCCGAGATGTAGTTCCAAAATCACTTCAAAG
CCTTCGAACTCAGCAATTTTTCGTCTGATCTTTCTGAGAGCCATTCGCCC
AAGCTCCACAGCGGCGGTCGGAATTCGGCATTCAATGATCTTCCCGGCTA
TGAAACCGCTTTCACTGGCCACACAGACGTACCATCTAACCAGACAAAGC
TATCTGATGCCACGCCTTGGCACAGCTTTCGCTTTCCTTCGCAACAGCTT
CACTCGCCCATTCACCTCCCACGGGCTTCAGTCTTCTCGCATCTCAAGCG
TGTCCCAGCAGCAACACTGCAACGTTTGTCACTCATACTCCCGTTCATAC
GCAATGTCCGCCCACTCGCAAATGTTCAAACTCGCCCTTTGCCAGATGCA
TGTCACTGCCGATAAAGAAGCAAACTTGGCAAAAGCCAGGGATTTTCTTC
GACGAGCTAAAGAAGCTGACGCAAAGATCGCCGTATTACCTGAGTGCTTT
CAATGCCCGTATGATACAACTTGCTTTCGTTCATACTCCGAAAGCCTGCC
AGAACCTCCATATCCGGTGACGAGTAGGCATGAATCGCCTTCTCTCACAA
TGCTTCAGGATATTGCGCTGGAGACAGGTATGTACATCGTGGGTGGATCT
GTGCCGGAAATATCTGAAGATAAGGTGTACAACACTAGCATGACCGTATC
ACCGGCAGGTGAGCTCATTGCAAAGCATCGCAAAGCCCATCTATTCGACA
TTGATGTTCCTGGGGGAATAACATTCAAGGAGAGTGATGCACTCACTGCT
GGGGAAAAAGCAACTGCTTTCAAAGTTCCAGAACTGTCGCTGACGGCTGG
AGTGGCCATTTGTTATGATATGAGATTCCCCGAGCTCGCAATGGTTCAAG
CGCGTAACATGAAAGCAAGCTTATTAATATATCCAGGTGCTTTTAATATG
ACGACTGGACCTGCTCATTGGGAGTTGCTCATCAGGGCACGTGCTTTAGA
TAACCAAGTGTTTGTAGCAGCATGTTCGCCTGCTCGAGCAACCAGCGGGG
ATGGATACAAGGCATGGGGACATTCAATGGTTGTTGATCCGTGGGGTAAA
ATCGTAGCTGCTACTGAAGAGAAGGAGTCAGTTGTCGTAGCTGAGATAGA
TCTTTCTAGAGTTGAAACAGTTCGAAAGGCTATTCCGACTAGGAGGCAGA
GAAGAACAGATTTGTATACCCTCGAATACCTTAAATAG
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protein sequence of Gchil2420.t1

>Gchil2420.t1 ID=Gchil2420.t1|Name=Gchil2420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=446bp
MISRSSCSKMSTDEVFLSFVKDKNTNNAHVFLMHNRALRCPRCSSKITSK
PSNSAIFRLIFLRAIRPSSTAAVGIRHSMIFPAMKPLSLATQTYHLTRQS
YLMPRLGTAFAFLRNSFTRPFTSHGLQSSRISSVSQQQHCNVCHSYSRSY
AMSAHSQMFKLALCQMHVTADKEANLAKARDFLRRAKEADAKIAVLPECF
QCPYDTTCFRSYSESLPEPPYPVTSRHESPSLTMLQDIALETGMYIVGGS
VPEISEDKVYNTSMTVSPAGELIAKHRKAHLFDIDVPGGITFKESDALTA
GEKATAFKVPELSLTAGVAICYDMRFPELAMVQARNMKASLLIYPGAFNM
TTGPAHWELLIRARALDNQVFVAACSPARATSGDGYKAWGHSMVVDPWGK
IVAATEEKESVVVAEIDLSRVETVRKAIPTRRQRRTDLYTLEYLK*
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mRNA from alignment at tig00004400_pilon:838801..840138+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2420.t1 ID=Gchil2420.t1|Name=Gchil2420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00004400_pilon:838801..840138+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAAGCCGGTCATCATGTTCCAAGATGTCAACAGATGAGGTGTTCTT
GTCGTTCGTTAAGGACAAGAACACCAACAACGCGCACGTGTTCTTGATGC
ACAACAGGGCTCTGCGATGCCCGAGATGTAGTTCCAAAATCACTTCAAAG
CCTTCGAACTCAGCAATTTTTCGTCTGATCTTTCTGAGAGCCATTCGCCC
AAGCTCCACAGCGGCGGTCGGAATTCGGCATTCAATGATCTTCCCGGCTA
TGAAACCGCTTTCACTGGCCACACAGACGTACCATCTAACCAGACAAAGC
TATCTGATGCCACGCCTTGGCACAGCTTTCGCTTTCCTTCGCAACAGCTT
CACTCGCCCATTCACCTCCCACGGGCTTCAGTCTTCTCGCATCTCAAGCG
TGTCCCAGCAGCAACACTGCAACGTTTGTCACTCATACTCCCGTTCATAC
GCAATGTCCGCCCACTCGCAAATGTTCAAACTCGCCCTTTGCCAGATGCA
TGTCACTGCCGATAAAGAAGCAAACTTGGCAAAAGCCAGGGATTTTCTTC
GACGAGCTAAAGAAGCTGACGCAAAGATCGCCGTATTACCTGAGTGCTTT
CAATGCCCGTATGATACAACTTGCTTTCGTTCATACTCCGAAAGCCTGCC
AGAACCTCCATATCCGGTGACGAGTAGGCATGAATCGCCTTCTCTCACAA
TGCTTCAGGATATTGCGCTGGAGACAGGTATGTACATCGTGGGTGGATCT
GTGCCGGAAATATCTGAAGATAAGGTGTACAACACTAGCATGACCGTATC
ACCGGCAGGTGAGCTCATTGCAAAGCATCGCAAAGCCCATCTATTCGACA
TTGATGTTCCTGGGGGAATAACATTCAAGGAGAGTGATGCACTCACTGCT
GGGGAAAAAGCAACTGCTTTCAAAGTTCCAGAACTGTCGCTGACGGCTGG
AGTGGCCATTTGTTATGATATGAGATTCCCCGAGCTCGCAATGGTTCAAG
CGCGTAACATGAAAGCAAGCTTATTAATATATCCAGGTGCTTTTAATATG
ACGACTGGACCTGCTCATTGGGAGTTGCTCATCAGGGCACGTGCTTTAGA
TAACCAAGTGTTTGTAGCAGCATGTTCGCCTGCTCGAGCAACCAGCGGGG
ATGGATACAAGGCATGGGGACATTCAATGGTTGTTGATCCGTGGGGTAAA
ATCGTAGCTGCTACTGAAGAGAAGGAGTCAGTTGTCGTAGCTGAGATAGA
TCTTTCTAGAGTTGAAACAGTTCGAAAGGCTATTCCGACTAGGAGGCAGA
GAAGAACAGATTTGTATACCCTCGAATACCTTAAATAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:838801..840138+

>Gchil2420.t1 ID=Gchil2420.t1|Name=Gchil2420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1338bp|location=Sequence derived from alignment at tig00004400_pilon:838801..840138+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAAGCCGGTCATCATGTTCCAAGATGTCAACAGATGAGGTGTTCTT
GTCGTTCGTTAAGGACAAGAACACCAACAACGCGCACGTGTTCTTGATGC
ACAACAGGGCTCTGCGATGCCCGAGATGTAGTTCCAAAATCACTTCAAAG
CCTTCGAACTCAGCAATTTTTCGTCTGATCTTTCTGAGAGCCATTCGCCC
AAGCTCCACAGCGGCGGTCGGAATTCGGCATTCAATGATCTTCCCGGCTA
TGAAACCGCTTTCACTGGCCACACAGACGTACCATCTAACCAGACAAAGC
TATCTGATGCCACGCCTTGGCACAGCTTTCGCTTTCCTTCGCAACAGCTT
CACTCGCCCATTCACCTCCCACGGGCTTCAGTCTTCTCGCATCTCAAGCG
TGTCCCAGCAGCAACACTGCAACGTTTGTCACTCATACTCCCGTTCATAC
GCAATGTCCGCCCACTCGCAAATGTTCAAACTCGCCCTTTGCCAGATGCA
TGTCACTGCCGATAAAGAAGCAAACTTGGCAAAAGCCAGGGATTTTCTTC
GACGAGCTAAAGAAGCTGACGCAAAGATCGCCGTATTACCTGAGTGCTTT
CAATGCCCGTATGATACAACTTGCTTTCGTTCATACTCCGAAAGCCTGCC
AGAACCTCCATATCCGGTGACGAGTAGGCATGAATCGCCTTCTCTCACAA
TGCTTCAGGATATTGCGCTGGAGACAGGTATGTACATCGTGGGTGGATCT
GTGCCGGAAATATCTGAAGATAAGGTGTACAACACTAGCATGACCGTATC
ACCGGCAGGTGAGCTCATTGCAAAGCATCGCAAAGCCCATCTATTCGACA
TTGATGTTCCTGGGGGAATAACATTCAAGGAGAGTGATGCACTCACTGCT
GGGGAAAAAGCAACTGCTTTCAAAGTTCCAGAACTGTCGCTGACGGCTGG
AGTGGCCATTTGTTATGATATGAGATTCCCCGAGCTCGCAATGGTTCAAG
CGCGTAACATGAAAGCAAGCTTATTAATATATCCAGGTGCTTTTAATATG
ACGACTGGACCTGCTCATTGGGAGTTGCTCATCAGGGCACGTGCTTTAGA
TAACCAAGTGTTTGTAGCAGCATGTTCGCCTGCTCGAGCAACCAGCGGGG
ATGGATACAAGGCATGGGGACATTCAATGGTTGTTGATCCGTGGGGTAAA
ATCGTAGCTGCTACTGAAGAGAAGGAGTCAGTTGTCGTAGCTGAGATAGA
TCTTTCTAGAGTTGAAACAGTTCGAAAGGCTATTCCGACTAGGAGGCAGA
GAAGAACAGATTTGTATACCCTCGAATACCTTAAATAG
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