Gchil2415.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2415.t1
Unique NameGchil2415.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length604
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:819460..822025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2415Gchil2415Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 819460..822025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2415.t1Gchil2415.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 819460..822025 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2415.t1.start1Gchil2415.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 819460..819462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2415.t1.CDS1Gchil2415.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 819460..819693 +
Gchil2415.t1.CDS2Gchil2415.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 820448..822025 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2415.t1.exon1Gchil2415.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 819460..819693 +
Gchil2415.t1.exon2Gchil2415.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 820448..822025 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2415.t1.intron1Gchil2415.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 819694..820447 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2415.t1.stop1Gchil2415.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 822023..822025 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2415.t1 ID=Gchil2415.t1|Name=Gchil2415.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=604bp
MRLLARLNVHRESGGVQRGDAHGAQLRKLVEMTSELHHQTRHVALPLRVE
KVAQVPRHARHLRRRRHRVFTAIRPDGPHSFLSDPSRVTTKLVDALLNNR
VGVADAHIHTKDLLVPVSRSVLIALNSYLADYACSVSFTAPPDPDSPALV
HAKPLPILAHQLRNVLEFVYTNDCAFVRNMRSSILWRKDTDVPPTTIVDI
IHLAHAAHICHTPELSNWCENTALAVVRHKPNLLCSALNTIMNCSTANAH
HLIDLWMSRVFQQPAYFLGSVYNESSPLQLHPTTGDLRTPVVDLDANTLA
RILKSRQDNDEYYFRALYCWATRGYTEFVRAGARWRNAIKLVSRIDFTKV
SSKFLLGFVDSSGLISEQDMPAIIRKHLAAKSNLPQSYGMHRSKDRPPKR
KNTVSGHHTDHSQKKPRLEPAHRSYQTSAVNQASPTAQLHQSKPPAHSPR
QHAIPENAITRVHAASPMPRTPRTHRQVAPPSSVHTFSLVSGAGDANHQS
QNRGREPQPPSYMRSPPNHRSQVAPQPNGSALHERSPCASTHRNPPRSAN
CILPRSYGANSIQRGQAPTSALAQSNDAFKEVKEEVVEDVKPKVKEEYEL
LHV*
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spliced messenger RNA

>Gchil2415.t1 ID=Gchil2415.t1|Name=Gchil2415.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00004400_pilon:819460..822025+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTGCTCGCACGACTCAACGTCCACCGTGAGTCCGGTGGCGTCCA
GCGCGGTGACGCGCACGGCGCTCAGCTGCGAAAGCTCGTCGAAATGACGT
CCGAACTTCACCACCAGACGCGCCACGTCGCGCTGCCGCTCCGCGTTGAG
AAAGTCGCACAGGTCCCCCGCCACGCCCGCCACCTCCGCCGTCGTCGCCA
CCGCGTCTTCACCGCCATTCGCCCGGACGGCCCCCACTCCTTTCTCTCCG
ACCCCTCCAGAGTCACCACAAAGCTCGTGGACGCCCTTCTCAACAACCGC
GTCGGCGTTGCAGACGCTCACATCCACACCAAGGATCTTCTCGTCCCGGT
GTCCCGCTCCGTCCTCATCGCCCTCAATTCCTATCTGGCCGACTACGCTT
GCTCCGTTTCCTTCACCGCCCCGCCCGACCCGGACAGTCCCGCCCTCGTC
CATGCCAAACCGCTTCCCATCCTCGCCCACCAGCTGCGCAACGTGCTCGA
GTTCGTGTACACCAATGACTGCGCCTTCGTTCGAAACATGCGCTCCTCCA
TTCTGTGGCGAAAGGACACCGATGTCCCCCCCACCACAATCGTCGATATC
ATCCACCTCGCCCACGCCGCCCACATCTGTCACACCCCGGAGCTCTCCAA
CTGGTGCGAGAACACCGCCCTGGCCGTTGTGCGCCACAAGCCAAACCTCC
TGTGCTCGGCCCTCAACACCATCATGAACTGCTCCACCGCAAACGCCCAT
CACCTTATTGACCTCTGGATGTCTCGAGTCTTCCAGCAACCCGCCTACTT
TCTCGGCAGCGTTTACAACGAAAGCTCTCCGCTCCAGCTGCACCCCACCA
CGGGCGACTTGCGTACCCCAGTTGTCGATCTCGACGCCAACACCCTTGCC
CGCATTTTGAAGTCGAGACAGGACAATGACGAGTACTACTTCCGCGCCCT
GTACTGTTGGGCAACTCGCGGCTACACTGAATTCGTCAGGGCCGGAGCGC
GCTGGAGAAATGCCATCAAGCTCGTCAGTCGCATTGACTTCACAAAGGTC
TCCTCCAAGTTTTTGCTCGGCTTTGTTGACTCCTCCGGCCTCATTTCTGA
ACAAGACATGCCCGCCATCATCCGCAAGCACCTCGCCGCCAAATCCAATC
TCCCACAAAGCTATGGCATGCATCGCTCCAAAGACAGGCCCCCCAAACGG
AAAAACACCGTCAGCGGTCACCACACTGACCATTCTCAAAAGAAACCGCG
GCTTGAGCCTGCCCACCGATCGTACCAAACCAGCGCCGTCAACCAAGCCT
CCCCTACCGCCCAATTACACCAATCCAAACCCCCTGCCCATTCGCCGCGC
CAACATGCCATACCCGAGAACGCCATCACCCGCGTCCATGCTGCATCGCC
CATGCCTCGCACTCCGCGTACTCACCGTCAAGTCGCGCCTCCCTCCTCCG
TGCACACATTTTCATTAGTCAGTGGTGCCGGTGACGCCAATCACCAATCC
CAAAACAGGGGTCGAGAGCCCCAACCTCCGAGCTACATGCGTTCCCCACC
CAATCATCGCTCGCAAGTCGCACCGCAGCCAAACGGTAGCGCTCTGCACG
AACGATCCCCTTGTGCATCTACGCATCGAAACCCCCCGAGGAGCGCCAAT
TGCATCCTTCCACGTTCCTATGGAGCGAATAGTATCCAGCGCGGACAAGC
ACCCACTTCTGCGCTCGCCCAAAGCAACGATGCCTTCAAAGAGGTGAAGG
AAGAAGTTGTGGAGGATGTCAAGCCAAAGGTGAAAGAAGAATATGAACTG
CTTCACGTATAG
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protein sequence of Gchil2415.t1

>Gchil2415.t1 ID=Gchil2415.t1|Name=Gchil2415.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=604bp
MRLLARLNVHRESGGVQRGDAHGAQLRKLVEMTSELHHQTRHVALPLRVE
KVAQVPRHARHLRRRRHRVFTAIRPDGPHSFLSDPSRVTTKLVDALLNNR
VGVADAHIHTKDLLVPVSRSVLIALNSYLADYACSVSFTAPPDPDSPALV
HAKPLPILAHQLRNVLEFVYTNDCAFVRNMRSSILWRKDTDVPPTTIVDI
IHLAHAAHICHTPELSNWCENTALAVVRHKPNLLCSALNTIMNCSTANAH
HLIDLWMSRVFQQPAYFLGSVYNESSPLQLHPTTGDLRTPVVDLDANTLA
RILKSRQDNDEYYFRALYCWATRGYTEFVRAGARWRNAIKLVSRIDFTKV
SSKFLLGFVDSSGLISEQDMPAIIRKHLAAKSNLPQSYGMHRSKDRPPKR
KNTVSGHHTDHSQKKPRLEPAHRSYQTSAVNQASPTAQLHQSKPPAHSPR
QHAIPENAITRVHAASPMPRTPRTHRQVAPPSSVHTFSLVSGAGDANHQS
QNRGREPQPPSYMRSPPNHRSQVAPQPNGSALHERSPCASTHRNPPRSAN
CILPRSYGANSIQRGQAPTSALAQSNDAFKEVKEEVVEDVKPKVKEEYEL
LHV*
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mRNA from alignment at tig00004400_pilon:819460..822025+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2415.t1 ID=Gchil2415.t1|Name=Gchil2415.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2566bp|location=Sequence derived from alignment at tig00004400_pilon:819460..822025+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTGCTCGCACGACTCAACGTCCACCGTGAGTCCGGTGGCGTCCA
GCGCGGTGACGCGCACGGCGCTCAGCTGCGAAAGCTCGTCGAAATGACGT
CCGAACTTCACCACCAGACGCGCCACGTCGCGCTGCCGCTCCGCGTTGAG
AAAGTCGCACAGGTCCCCCGCCACGCCCGCCACCTCCGCCGTCGTCGCCA
CCGCGTCTTCACCGCCATTCGCCCGGACGGCCCCGTGACCGTCGTCGTCT
TTGTGGCCGCTGCCGCGCGTGTCGCGCGTGTCGCACGCCACCCAGGCCCG
TCTTGCCCACCGCGCCGAGTCCCCCTTCACTACCACCACCACGGGCAGTG
CCGCGCCGCGCCGCTGTGTACGCGCAAGACGCAGCGGTAAAACGGGCACG
AACGCGCCGCCGCGCGTCGTCATGGCGTCACCAAGCAACAAAACAAACAA
GGCAGCAGCAGCGCGCGAGCTCGAGCGCGCGCTGCACCACGTTTTTCCAA
CCGCATGCGCGTGCTCGGCAATTTATACTGTATGTGTTAGGGTTATGTAC
CTTTGTACATACTGTAACTTTACCTTTGTACAATGCAACGCCACCGGCGC
TCCATTGGCGCCCGATTCGACGGTGTGATCGCGCAGGAAAGACGTCGTCG
CTCAGCCTCGCAccccacccgccgtcaccatgcccgccgcgtcacagccg
tcttcgtcgtcgcgctctgcgcgtcgtcgtcgtcgccgcgcccccctccc
ccccccctcgtccccgtctccgtccccttctccgtccccgtTGCCGCTTC
GCCAGAGAACCACCCCCCTCAGGAGGAGCAGCAGGGTGgccgccgcagca
gccgccgcagctgccaccgcctccgcctccAACCACCACTCTTTGCACTC
GCACTCGTTCTCGCCGTcgcccgcgtccccgtcccgccccgacctggccg
cgcccTCATTCCCCTGTGAACTGTCCGAGCGCCCGCAGCACTCCTTTCTC
TCCGACCCCTCCAGAGTCACCACAAAGCTCGTGGACGCCCTTCTCAACAA
CCGCGTCGGCGTTGCAGACGCTCACATCCACACCAAGGATCTTCTCGTCC
CGGTGTCCCGCTCCGTCCTCATCGCCCTCAATTCCTATCTGGCCGACTAC
GCTTGCTCCGTTTCCTTCACCGCCCCGCCCGACCCGGACAGTCCCGCCCT
CGTCCATGCCAAACCGCTTCCCATCCTCGCCCACCAGCTGCGCAACGTGC
TCGAGTTCGTGTACACCAATGACTGCGCCTTCGTTCGAAACATGCGCTCC
TCCATTCTGTGGCGAAAGGACACCGATGTCCCCCCCACCACAATCGTCGA
TATCATCCACCTCGCCCACGCCGCCCACATCTGTCACACCCCGGAGCTCT
CCAACTGGTGCGAGAACACCGCCCTGGCCGTTGTGCGCCACAAGCCAAAC
CTCCTGTGCTCGGCCCTCAACACCATCATGAACTGCTCCACCGCAAACGC
CCATCACCTTATTGACCTCTGGATGTCTCGAGTCTTCCAGCAACCCGCCT
ACTTTCTCGGCAGCGTTTACAACGAAAGCTCTCCGCTCCAGCTGCACCCC
ACCACGGGCGACTTGCGTACCCCAGTTGTCGATCTCGACGCCAACACCCT
TGCCCGCATTTTGAAGTCGAGACAGGACAATGACGAGTACTACTTCCGCG
CCCTGTACTGTTGGGCAACTCGCGGCTACACTGAATTCGTCAGGGCCGGA
GCGCGCTGGAGAAATGCCATCAAGCTCGTCAGTCGCATTGACTTCACAAA
GGTCTCCTCCAAGTTTTTGCTCGGCTTTGTTGACTCCTCCGGCCTCATTT
CTGAACAAGACATGCCCGCCATCATCCGCAAGCACCTCGCCGCCAAATCC
AATCTCCCACAAAGCTATGGCATGCATCGCTCCAAAGACAGGCCCCCCAA
ACGGAAAAACACCGTCAGCGGTCACCACACTGACCATTCTCAAAAGAAAC
CGCGGCTTGAGCCTGCCCACCGATCGTACCAAACCAGCGCCGTCAACCAA
GCCTCCCCTACCGCCCAATTACACCAATCCAAACCCCCTGCCCATTCGCC
GCGCCAACATGCCATACCCGAGAACGCCATCACCCGCGTCCATGCTGCAT
CGCCCATGCCTCGCACTCCGCGTACTCACCGTCAAGTCGCGCCTCCCTCC
TCCGTGCACACATTTTCATTAGTCAGTGGTGCCGGTGACGCCAATCACCA
ATCCCAAAACAGGGGTCGAGAGCCCCAACCTCCGAGCTACATGCGTTCCC
CACCCAATCATCGCTCGCAAGTCGCACCGCAGCCAAACGGTAGCGCTCTG
CACGAACGATCCCCTTGTGCATCTACGCATCGAAACCCCCCGAGGAGCGC
CAATTGCATCCTTCCACGTTCCTATGGAGCGAATAGTATCCAGCGCGGAC
AAGCACCCACTTCTGCGCTCGCCCAAAGCAACGATGCCTTCAAAGAGGTG
AAGGAAGAAGTTGTGGAGGATGTCAAGCCAAAGGTGAAAGAAGAATATGA
ACTGCTTCACGTATAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:819460..822025+

>Gchil2415.t1 ID=Gchil2415.t1|Name=Gchil2415.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00004400_pilon:819460..822025+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTGCTCGCACGACTCAACGTCCACCGTGAGTCCGGTGGCGTCCA
GCGCGGTGACGCGCACGGCGCTCAGCTGCGAAAGCTCGTCGAAATGACGT
CCGAACTTCACCACCAGACGCGCCACGTCGCGCTGCCGCTCCGCGTTGAG
AAAGTCGCACAGGTCCCCCGCCACGCCCGCCACCTCCGCCGTCGTCGCCA
CCGCGTCTTCACCGCCATTCGCCCGGACGGCCCCCACTCCTTTCTCTCCG
ACCCCTCCAGAGTCACCACAAAGCTCGTGGACGCCCTTCTCAACAACCGC
GTCGGCGTTGCAGACGCTCACATCCACACCAAGGATCTTCTCGTCCCGGT
GTCCCGCTCCGTCCTCATCGCCCTCAATTCCTATCTGGCCGACTACGCTT
GCTCCGTTTCCTTCACCGCCCCGCCCGACCCGGACAGTCCCGCCCTCGTC
CATGCCAAACCGCTTCCCATCCTCGCCCACCAGCTGCGCAACGTGCTCGA
GTTCGTGTACACCAATGACTGCGCCTTCGTTCGAAACATGCGCTCCTCCA
TTCTGTGGCGAAAGGACACCGATGTCCCCCCCACCACAATCGTCGATATC
ATCCACCTCGCCCACGCCGCCCACATCTGTCACACCCCGGAGCTCTCCAA
CTGGTGCGAGAACACCGCCCTGGCCGTTGTGCGCCACAAGCCAAACCTCC
TGTGCTCGGCCCTCAACACCATCATGAACTGCTCCACCGCAAACGCCCAT
CACCTTATTGACCTCTGGATGTCTCGAGTCTTCCAGCAACCCGCCTACTT
TCTCGGCAGCGTTTACAACGAAAGCTCTCCGCTCCAGCTGCACCCCACCA
CGGGCGACTTGCGTACCCCAGTTGTCGATCTCGACGCCAACACCCTTGCC
CGCATTTTGAAGTCGAGACAGGACAATGACGAGTACTACTTCCGCGCCCT
GTACTGTTGGGCAACTCGCGGCTACACTGAATTCGTCAGGGCCGGAGCGC
GCTGGAGAAATGCCATCAAGCTCGTCAGTCGCATTGACTTCACAAAGGTC
TCCTCCAAGTTTTTGCTCGGCTTTGTTGACTCCTCCGGCCTCATTTCTGA
ACAAGACATGCCCGCCATCATCCGCAAGCACCTCGCCGCCAAATCCAATC
TCCCACAAAGCTATGGCATGCATCGCTCCAAAGACAGGCCCCCCAAACGG
AAAAACACCGTCAGCGGTCACCACACTGACCATTCTCAAAAGAAACCGCG
GCTTGAGCCTGCCCACCGATCGTACCAAACCAGCGCCGTCAACCAAGCCT
CCCCTACCGCCCAATTACACCAATCCAAACCCCCTGCCCATTCGCCGCGC
CAACATGCCATACCCGAGAACGCCATCACCCGCGTCCATGCTGCATCGCC
CATGCCTCGCACTCCGCGTACTCACCGTCAAGTCGCGCCTCCCTCCTCCG
TGCACACATTTTCATTAGTCAGTGGTGCCGGTGACGCCAATCACCAATCC
CAAAACAGGGGTCGAGAGCCCCAACCTCCGAGCTACATGCGTTCCCCACC
CAATCATCGCTCGCAAGTCGCACCGCAGCCAAACGGTAGCGCTCTGCACG
AACGATCCCCTTGTGCATCTACGCATCGAAACCCCCCGAGGAGCGCCAAT
TGCATCCTTCCACGTTCCTATGGAGCGAATAGTATCCAGCGCGGACAAGC
ACCCACTTCTGCGCTCGCCCAAAGCAACGATGCCTTCAAAGAGGTGAAGG
AAGAAGTTGTGGAGGATGTCAAGCCAAAGGTGAAAGAAGAATATGAACTG
CTTCACGTATAG
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