Gchil2411.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2411.t1
Unique Name	Gchil2411.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:721572..722894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CML284CT
PFAMs	GcpE
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC01486
KEGG ko	ko:K03526
KEGG Reaction	R08689,R10859
KEGG Pathway	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG Module	M00096
Evalue	1.13e-235
EggNOG OGs	COG0821@1\|root,2QSBY@2759\|Eukaryota
EC	1.17.7.1,1.17.7.3
Description	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2411	Gchil2411	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 721572..722894 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2411.t1.start1	Gchil2411.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 721572..721574 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2411.t1.CDS1	Gchil2411.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 721572..722894 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2411.t1.exon1	Gchil2411.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 721572..722894 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2411.t1.stop1	Gchil2411.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 722892..722894 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2411.t1	Gchil2411.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 721572..722894 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:721572..722894+
coding sequence from alignment at tig00004400_pilon:721572..722894+

mRNA sequence

>Gchil2411.t1 ID=Gchil2411.t1|Name=Gchil2411.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp
MHDGPARPSPPPELVKDKSFMSDQSGIAGLDIESGAIQRRPTRVVRVGEI
LIGGGNPVVVQSMINEDTLDIDNAVNSIREMHEAGCEIVRVTCVSMAHAH
AVGFIKEKLRAEYKDVPLVADVHHNGLKIALEVAKHVDKVRINPGLYVFE
KPDVNRTEYNSEEFEAAKNKLRDTLEPLIVSLRDQGKALRIGVNHGSLSE
RMLFTYGDTPRGMVESALECIRVCEDLNFHNIVISMKASKVLVMLAAYRM
LAKVLDANGMNYPLHLGVTEAGDGEYGRIKSTLGIGTLLAEGLGDTIRVS
LTEAPVKEIPVCYGILQGLGLRRTMVEYVACPSCGRTLFNLETVLHEVRE
ATKHMPGLSIAVMGCIVNGPGEMADADYGYVGKQAGFISLYRGRKEIRTV
RETNGVEELIKLLKEDGVWVEAPAAEGSAVGEERVAAVRK*

spliced messenger RNA

>Gchil2411.t1 ID=Gchil2411.t1|Name=Gchil2411.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00004400_pilon:721572..722894+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGACGGACCGGCTCGACCGTCACCTCCGCCGGAATTGGTCAAGGA
TAAGTCGTTCATGTCCGACCAGTCCGGCATTGCGGGTCTGGACATTGAAA
GCGGCGCCATTCAGCGCCGACCCACTCGCGTGGTGCGCGTGGGCGAGATT
CTGATTGGCGGTGGCAACCCGGTGGTCGTTCAGAGCATGATTAATGAAGA
CACACTTGACATTGACAACGCGGTGAATTCCATCCGCGAAATGCACGAGG
CTGGGTGTGAAATTGTTCGCGTCACGTGCGTTAGCATGGCGCATGCCCAC
GCGGTGGGCTTTATCAAGGAGAAGCTGCGTGCGGAGTACAAGGATGTTCC
TCTGGTAGCTGACGTGCATCACAATGGACTCAAGATCGCGTTAGAGGTGG
CCAAACACGTGGACAAGGTACGCATCAATCCTGGGCTGTACGTGTTTGAG
AAGCCTGACGTGAATCGCACCGAGTACAACAGCGAAGAGTTTGAGGCGGC
CAAGAACAAGCTGCGAGATACACTCGAGCCTCTCATTGTGAGCTTGAGAG
ACCAGGGCAAGGCGCTACGAATCGGAGTGAACCACGGGTCGCTGTCGGAG
CGCATGTTGTTTACATATGGCGACACGCCGCGCGGTATGGTGGAGAGCGC
TTTGGAATGCATCCGCGTGTGTGAGGACCTTAACTTTCACAACATTGTCA
TCTCAATGAAGGCCAGCAAAGTGCTGGTAATGCTAGCGGCATACCGCATG
CTCGCCAAGGTACTGGACGCAAATGGGATGAACTATCCGTTGCATCTGGG
CGTGACGGAGGCAGGGGATGGGGAGTACGGAAGGATTAAGAGCACGCTGG
GTATCGGTACGCTGTTGGCGGAGGGGCTGGGGGATACGATCCGTGTGTCG
TTAACAGAGGCGCCTGTGAAGGAGATCCCCGTGTGTTATGGGATCCTGCA
AGGGTTGGGGCTGCGCCGGACCATGGTAGAGTATGTGGCGTGCCCGTCGT
GCGGAAGGACGCTGTTCAACCTGGAGACAGTGTTGCACGAGGTGCGCGAG
GCAACAAAGCACATGCCGGGGCTCTCGATTGCGGTGATGGGATGCATCGT
GAACGGACCGGGCGAGATGGCGGACGCCGACTATGGGTACGTGGGCAAGC
AGGCGGGCTTCATCTCGCTGTACCGGGGACGCAAGGAGATTCGCACGGTG
CGGGAGACGAACGGGGTGGAGGAGCTCATCAAGCTGTTGAAGGAGGACGG
AGTATGGGTGGAAGCGCCAGCGGCAGAGGGTAGTGCGGTGGGGGAGGAGC
GCGTAGCGGCGGTACGTAAATAG

protein sequence of Gchil2411.t1

>Gchil2411.t1 ID=Gchil2411.t1|Name=Gchil2411.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=441bp
MHDGPARPSPPPELVKDKSFMSDQSGIAGLDIESGAIQRRPTRVVRVGEI
LIGGGNPVVVQSMINEDTLDIDNAVNSIREMHEAGCEIVRVTCVSMAHAH
AVGFIKEKLRAEYKDVPLVADVHHNGLKIALEVAKHVDKVRINPGLYVFE
KPDVNRTEYNSEEFEAAKNKLRDTLEPLIVSLRDQGKALRIGVNHGSLSE
RMLFTYGDTPRGMVESALECIRVCEDLNFHNIVISMKASKVLVMLAAYRM
LAKVLDANGMNYPLHLGVTEAGDGEYGRIKSTLGIGTLLAEGLGDTIRVS
LTEAPVKEIPVCYGILQGLGLRRTMVEYVACPSCGRTLFNLETVLHEVRE
ATKHMPGLSIAVMGCIVNGPGEMADADYGYVGKQAGFISLYRGRKEIRTV
RETNGVEELIKLLKEDGVWVEAPAAEGSAVGEERVAAVRK*

mRNA from alignment at tig00004400_pilon:721572..722894+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2411.t1 ID=Gchil2411.t1|Name=Gchil2411.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00004400_pilon:721572..722894+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGACGGACCGGCTCGACCGTCACCTCCGCCGGAATTGGTCAAGGA
TAAGTCGTTCATGTCCGACCAGTCCGGCATTGCGGGTCTGGACATTGAAA
GCGGCGCCATTCAGCGCCGACCCACTCGCGTGGTGCGCGTGGGCGAGATT
CTGATTGGCGGTGGCAACCCGGTGGTCGTTCAGAGCATGATTAATGAAGA
CACACTTGACATTGACAACGCGGTGAATTCCATCCGCGAAATGCACGAGG
CTGGGTGTGAAATTGTTCGCGTCACGTGCGTTAGCATGGCGCATGCCCAC
GCGGTGGGCTTTATCAAGGAGAAGCTGCGTGCGGAGTACAAGGATGTTCC
TCTGGTAGCTGACGTGCATCACAATGGACTCAAGATCGCGTTAGAGGTGG
CCAAACACGTGGACAAGGTACGCATCAATCCTGGGCTGTACGTGTTTGAG
AAGCCTGACGTGAATCGCACCGAGTACAACAGCGAAGAGTTTGAGGCGGC
CAAGAACAAGCTGCGAGATACACTCGAGCCTCTCATTGTGAGCTTGAGAG
ACCAGGGCAAGGCGCTACGAATCGGAGTGAACCACGGGTCGCTGTCGGAG
CGCATGTTGTTTACATATGGCGACACGCCGCGCGGTATGGTGGAGAGCGC
TTTGGAATGCATCCGCGTGTGTGAGGACCTTAACTTTCACAACATTGTCA
TCTCAATGAAGGCCAGCAAAGTGCTGGTAATGCTAGCGGCATACCGCATG
CTCGCCAAGGTACTGGACGCAAATGGGATGAACTATCCGTTGCATCTGGG
CGTGACGGAGGCAGGGGATGGGGAGTACGGAAGGATTAAGAGCACGCTGG
GTATCGGTACGCTGTTGGCGGAGGGGCTGGGGGATACGATCCGTGTGTCG
TTAACAGAGGCGCCTGTGAAGGAGATCCCCGTGTGTTATGGGATCCTGCA
AGGGTTGGGGCTGCGCCGGACCATGGTAGAGTATGTGGCGTGCCCGTCGT
GCGGAAGGACGCTGTTCAACCTGGAGACAGTGTTGCACGAGGTGCGCGAG
GCAACAAAGCACATGCCGGGGCTCTCGATTGCGGTGATGGGATGCATCGT
GAACGGACCGGGCGAGATGGCGGACGCCGACTATGGGTACGTGGGCAAGC
AGGCGGGCTTCATCTCGCTGTACCGGGGACGCAAGGAGATTCGCACGGTG
CGGGAGACGAACGGGGTGGAGGAGCTCATCAAGCTGTTGAAGGAGGACGG
AGTATGGGTGGAAGCGCCAGCGGCAGAGGGTAGTGCGGTGGGGGAGGAGC
GCGTAGCGGCGGTACGTAAATAG

Coding sequence (CDS) from alignment at tig00004400_pilon:721572..722894+

>Gchil2411.t1 ID=Gchil2411.t1|Name=Gchil2411.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00004400_pilon:721572..722894+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGACGGACCGGCTCGACCGTCACCTCCGCCGGAATTGGTCAAGGA
TAAGTCGTTCATGTCCGACCAGTCCGGCATTGCGGGTCTGGACATTGAAA
GCGGCGCCATTCAGCGCCGACCCACTCGCGTGGTGCGCGTGGGCGAGATT
CTGATTGGCGGTGGCAACCCGGTGGTCGTTCAGAGCATGATTAATGAAGA
CACACTTGACATTGACAACGCGGTGAATTCCATCCGCGAAATGCACGAGG
CTGGGTGTGAAATTGTTCGCGTCACGTGCGTTAGCATGGCGCATGCCCAC
GCGGTGGGCTTTATCAAGGAGAAGCTGCGTGCGGAGTACAAGGATGTTCC
TCTGGTAGCTGACGTGCATCACAATGGACTCAAGATCGCGTTAGAGGTGG
CCAAACACGTGGACAAGGTACGCATCAATCCTGGGCTGTACGTGTTTGAG
AAGCCTGACGTGAATCGCACCGAGTACAACAGCGAAGAGTTTGAGGCGGC
CAAGAACAAGCTGCGAGATACACTCGAGCCTCTCATTGTGAGCTTGAGAG
ACCAGGGCAAGGCGCTACGAATCGGAGTGAACCACGGGTCGCTGTCGGAG
CGCATGTTGTTTACATATGGCGACACGCCGCGCGGTATGGTGGAGAGCGC
TTTGGAATGCATCCGCGTGTGTGAGGACCTTAACTTTCACAACATTGTCA
TCTCAATGAAGGCCAGCAAAGTGCTGGTAATGCTAGCGGCATACCGCATG
CTCGCCAAGGTACTGGACGCAAATGGGATGAACTATCCGTTGCATCTGGG
CGTGACGGAGGCAGGGGATGGGGAGTACGGAAGGATTAAGAGCACGCTGG
GTATCGGTACGCTGTTGGCGGAGGGGCTGGGGGATACGATCCGTGTGTCG
TTAACAGAGGCGCCTGTGAAGGAGATCCCCGTGTGTTATGGGATCCTGCA
AGGGTTGGGGCTGCGCCGGACCATGGTAGAGTATGTGGCGTGCCCGTCGT
GCGGAAGGACGCTGTTCAACCTGGAGACAGTGTTGCACGAGGTGCGCGAG
GCAACAAAGCACATGCCGGGGCTCTCGATTGCGGTGATGGGATGCATCGT
GAACGGACCGGGCGAGATGGCGGACGCCGACTATGGGTACGTGGGCAAGC
AGGCGGGCTTCATCTCGCTGTACCGGGGACGCAAGGAGATTCGCACGGTG
CGGGAGACGAACGGGGTGGAGGAGCTCATCAAGCTGTTGAAGGAGGACGG
AGTATGGGTGGAAGCGCCAGCGGCAGAGGGTAGTGCGGTGGGGGAGGAGC
GCGTAGCGGCGGTACGTAAATAG