Gchil2405.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2405.t1
Unique Name	Gchil2405.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:667323..668546 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	181119.XP_005530398.1
Preferred name	HIBCH
PFAMs	ECH_2
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00004,RC00014,RC00137
KEGG ko	ko:K05605
KEGG Reaction	R03158,R05064
KEGG Pathway	ko00280,ko00410,ko00640,ko01100,ko01200,map00280,map00410,map00640,map01100,map01200
KEGG Module	M00013
GOs	GO:0003674,GO:0003824,GO:0003860,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575
Evalue	3.15e-70
EggNOG OGs	COG1024@1\|root,KOG1684@2759\|Eukaryota,38EBG@33154\|Opisthokonta,3BDAT@33208\|Metazoa,3CYSP@33213\|Bilateria,48211@7711\|Chordata,4920N@7742\|Vertebrata,4GT2E@8782\|Aves
EC	3.1.2.4
Description	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2405	Gchil2405	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 667323..668546 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2405.t1.stop1	Gchil2405.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 667323..667325 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2405.t1.CDS1	Gchil2405.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 667323..668546 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2405.t1.exon1	Gchil2405.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 667323..668546 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2405.t1.start1	Gchil2405.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 668544..668546 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2405.t1	Gchil2405.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 667323..668546 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:667323..668546-
coding sequence from alignment at tig00004400_pilon:667323..668546-

mRNA sequence

>Gchil2405.t1 ID=Gchil2405.t1|Name=Gchil2405.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp
MAVNNQKERKWGPSKVVTLALTTSGLPIIPSIYSPILEQSSLDNKSVRTL
CLNRPNSLHALDTTMCETLYSRILQIAHSETKCVILKSTTPSRAFCAGGD
VRKMCILAEKQQYEMMHEFLRIESRLVSLLGMGTSDVVSILDGVVMGGGA
GLCVHGRFRVATENTVFAMPEVAIGFHPDVGASHFLSRLSPGLGTYLALT
GASLKGEQVLSAGIATHFVPHNSIDGFLEAIQGCRIRSRRDIENLLHRFC
RNRSPLTEDTQFLSSMAALFNLPSIEDVIKRLKEESSLVDSIHASFAADS
LRTIQNRCPMSLKVAFESLKRGLSMELDDCLKMEFRLSIRLSRRADFARG
VRAVLVSKSNRAQWSPAKLSDISDEDVSKLFRPLADIMLPDLDLSHDLDT
LSRMARL*

spliced messenger RNA

>Gchil2405.t1 ID=Gchil2405.t1|Name=Gchil2405.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00004400_pilon:667323..668546- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCAACAACCAAAAGGAACGTAAATGGGGTCCTTCGAAGGTCGT
CACTTTAGCCCTGACAACATCTGGGCTGCCAATCATTCCATCCATTTATT
CTCCTATACTGGAGCAATCGTCCCTCGACAACAAGAGCGTCAGGACTTTG
TGTCTGAATCGTCCAAATTCTCTTCATGCTTTGGACACAACCATGTGCGA
GACTCTTTACTCTCGAATTCTTCAAATAGCTCACTCTGAAACGAAGTGCG
TTATTCTCAAATCCACTACTCCGTCTCGAGCTTTTTGTGCAGGAGGCGAT
GTGCGCAAAATGTGCATTCTTGCCGAAAAGCAGCAATATGAAATGATGCA
TGAGTTTTTGAGAATCGAGAGTCGTCTTGTCTCTCTCTTAGGTATGGGAA
CATCTGATGTTGTTTCAATACTCGACGGTGTCGTTATGGGAGGGGGTGCA
GGTTTATGCGTTCATGGAAGATTCCGAGTCGCAACGGAGAACACCGTTTT
TGCCATGCCCGAAGTTGCAATTGGGTTTCACCCTGATGTTGGCGCTTCAC
ACTTTCTGTCGCGTCTCAGTCCTGGTCTTGGCACTTATCTCGCTCTCACG
GGCGCTTCTCTGAAAGGAGAGCAGGTTCTTTCTGCTGGAATAGCTACTCA
TTTTGTTCCTCACAATTCGATCGATGGCTTTCTAGAAGCCATACAAGGAT
GTCGTATTCGCTCGAGGAGGGACATTGAGAATCTACTGCACAGATTTTGT
AGAAATAGATCGCCATTGACGGAAGATACACAATTCTTATCATCTATGGC
GGCACTATTCAATCTTCCTTCTATCGAGGATGTCATCAAAAGACTGAAAG
AGGAGAGTTCACTGGTCGACAGCATACACGCAAGTTTCGCGGCGGATTCA
TTGCGAACAATTCAGAACCGCTGTCCGATGTCGCTGAAAGTCGCTTTCGA
ATCGCTCAAAAGAGGATTAAGCATGGAGCTTGATGATTGTCTGAAGATGG
AGTTCAGACTGTCAATTCGTCTTTCGAGACGAGCAGATTTTGCGCGGGGG
GTCCGGGCTGTGCTGGTATCCAAAAGCAACAGAGCGCAGTGGTCACCGGC
TAAATTATCTGATATCTCTGATGAAGATGTGTCCAAGCTGTTCCGACCTC
TGGCAGATATAATGCTCCCGGACCTCGACCTTTCACATGACCTGGACACA
TTGTCAAGAATGGCTCGATTGTGA

protein sequence of Gchil2405.t1

>Gchil2405.t1 ID=Gchil2405.t1|Name=Gchil2405.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=408bp
MAVNNQKERKWGPSKVVTLALTTSGLPIIPSIYSPILEQSSLDNKSVRTL
CLNRPNSLHALDTTMCETLYSRILQIAHSETKCVILKSTTPSRAFCAGGD
VRKMCILAEKQQYEMMHEFLRIESRLVSLLGMGTSDVVSILDGVVMGGGA
GLCVHGRFRVATENTVFAMPEVAIGFHPDVGASHFLSRLSPGLGTYLALT
GASLKGEQVLSAGIATHFVPHNSIDGFLEAIQGCRIRSRRDIENLLHRFC
RNRSPLTEDTQFLSSMAALFNLPSIEDVIKRLKEESSLVDSIHASFAADS
LRTIQNRCPMSLKVAFESLKRGLSMELDDCLKMEFRLSIRLSRRADFARG
VRAVLVSKSNRAQWSPAKLSDISDEDVSKLFRPLADIMLPDLDLSHDLDT
LSRMARL*

mRNA from alignment at tig00004400_pilon:667323..668546-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2405.t1 ID=Gchil2405.t1|Name=Gchil2405.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00004400_pilon:667323..668546- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTCAACAACCAAAAGGAACGTAAATGGGGTCCTTCGAAGGTCGT
CACTTTAGCCCTGACAACATCTGGGCTGCCAATCATTCCATCCATTTATT
CTCCTATACTGGAGCAATCGTCCCTCGACAACAAGAGCGTCAGGACTTTG
TGTCTGAATCGTCCAAATTCTCTTCATGCTTTGGACACAACCATGTGCGA
GACTCTTTACTCTCGAATTCTTCAAATAGCTCACTCTGAAACGAAGTGCG
TTATTCTCAAATCCACTACTCCGTCTCGAGCTTTTTGTGCAGGAGGCGAT
GTGCGCAAAATGTGCATTCTTGCCGAAAAGCAGCAATATGAAATGATGCA
TGAGTTTTTGAGAATCGAGAGTCGTCTTGTCTCTCTCTTAGGTATGGGAA
CATCTGATGTTGTTTCAATACTCGACGGTGTCGTTATGGGAGGGGGTGCA
GGTTTATGCGTTCATGGAAGATTCCGAGTCGCAACGGAGAACACCGTTTT
TGCCATGCCCGAAGTTGCAATTGGGTTTCACCCTGATGTTGGCGCTTCAC
ACTTTCTGTCGCGTCTCAGTCCTGGTCTTGGCACTTATCTCGCTCTCACG
GGCGCTTCTCTGAAAGGAGAGCAGGTTCTTTCTGCTGGAATAGCTACTCA
TTTTGTTCCTCACAATTCGATCGATGGCTTTCTAGAAGCCATACAAGGAT
GTCGTATTCGCTCGAGGAGGGACATTGAGAATCTACTGCACAGATTTTGT
AGAAATAGATCGCCATTGACGGAAGATACACAATTCTTATCATCTATGGC
GGCACTATTCAATCTTCCTTCTATCGAGGATGTCATCAAAAGACTGAAAG
AGGAGAGTTCACTGGTCGACAGCATACACGCAAGTTTCGCGGCGGATTCA
TTGCGAACAATTCAGAACCGCTGTCCGATGTCGCTGAAAGTCGCTTTCGA
ATCGCTCAAAAGAGGATTAAGCATGGAGCTTGATGATTGTCTGAAGATGG
AGTTCAGACTGTCAATTCGTCTTTCGAGACGAGCAGATTTTGCGCGGGGG
GTCCGGGCTGTGCTGGTATCCAAAAGCAACAGAGCGCAGTGGTCACCGGC
TAAATTATCTGATATCTCTGATGAAGATGTGTCCAAGCTGTTCCGACCTC
TGGCAGATATAATGCTCCCGGACCTCGACCTTTCACATGACCTGGACACA
TTGTCAAGAATGGCTCGATTGTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:667323..668546-

>Gchil2405.t1 ID=Gchil2405.t1|Name=Gchil2405.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00004400_pilon:667323..668546- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTCAACAACCAAAAGGAACGTAAATGGGGTCCTTCGAAGGTCGT
CACTTTAGCCCTGACAACATCTGGGCTGCCAATCATTCCATCCATTTATT
CTCCTATACTGGAGCAATCGTCCCTCGACAACAAGAGCGTCAGGACTTTG
TGTCTGAATCGTCCAAATTCTCTTCATGCTTTGGACACAACCATGTGCGA
GACTCTTTACTCTCGAATTCTTCAAATAGCTCACTCTGAAACGAAGTGCG
TTATTCTCAAATCCACTACTCCGTCTCGAGCTTTTTGTGCAGGAGGCGAT
GTGCGCAAAATGTGCATTCTTGCCGAAAAGCAGCAATATGAAATGATGCA
TGAGTTTTTGAGAATCGAGAGTCGTCTTGTCTCTCTCTTAGGTATGGGAA
CATCTGATGTTGTTTCAATACTCGACGGTGTCGTTATGGGAGGGGGTGCA
GGTTTATGCGTTCATGGAAGATTCCGAGTCGCAACGGAGAACACCGTTTT
TGCCATGCCCGAAGTTGCAATTGGGTTTCACCCTGATGTTGGCGCTTCAC
ACTTTCTGTCGCGTCTCAGTCCTGGTCTTGGCACTTATCTCGCTCTCACG
GGCGCTTCTCTGAAAGGAGAGCAGGTTCTTTCTGCTGGAATAGCTACTCA
TTTTGTTCCTCACAATTCGATCGATGGCTTTCTAGAAGCCATACAAGGAT
GTCGTATTCGCTCGAGGAGGGACATTGAGAATCTACTGCACAGATTTTGT
AGAAATAGATCGCCATTGACGGAAGATACACAATTCTTATCATCTATGGC
GGCACTATTCAATCTTCCTTCTATCGAGGATGTCATCAAAAGACTGAAAG
AGGAGAGTTCACTGGTCGACAGCATACACGCAAGTTTCGCGGCGGATTCA
TTGCGAACAATTCAGAACCGCTGTCCGATGTCGCTGAAAGTCGCTTTCGA
ATCGCTCAAAAGAGGATTAAGCATGGAGCTTGATGATTGTCTGAAGATGG
AGTTCAGACTGTCAATTCGTCTTTCGAGACGAGCAGATTTTGCGCGGGGG
GTCCGGGCTGTGCTGGTATCCAAAAGCAACAGAGCGCAGTGGTCACCGGC
TAAATTATCTGATATCTCTGATGAAGATGTGTCCAAGCTGTTCCGACCTC
TGGCAGATATAATGCTCCCGGACCTCGACCTTTCACATGACCTGGACACA
TTGTCAAGAATGGCTCGATTGTGA