Gchil2402.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2402.t1
Unique NameGchil2402.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:578424..579587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LD67
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue6.04e-13
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2402Gchil2402Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 578424..579587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2402.t1.stop1Gchil2402.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 578424..578426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2402.t1.CDS1Gchil2402.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 578424..579587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2402.t1.exon1Gchil2402.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 578424..579587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2402.t1.start1Gchil2402.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 579585..579587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2402.t1Gchil2402.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 578424..579587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2402.t1 ID=Gchil2402.t1|Name=Gchil2402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=388bp
MPNMPYSFDEDAPKDYWLHFPAGSKNGSPGAALHSQVVAAGKRGWTPYDP
YRPDFRWRAGVCGDAVDGPQHHLRGGKYYYDAKIVARYSQGSVIGVGTSI
VTHHNGYMEMHLCDPSKCGGEISRRCFLSGACVQLHRAYNPVCESGKSPH
CGPIDHTYPGRWYMPCDAKNGWNDYRPAYATFKLPNHFYCKHCVLQWYWV
AANTCNPPGVLDYFDSKDRPTWGTCRGQGGAKGGVTRIQPPCGGNLFPEE
YIQCADISIDTVPRARSAPRSNLPSPKPTPWARHSLSKLMLWADRQPLRE
LVDGAVINIAMYDGIKIEAQLVSGVKTPAVQFFVNGKKMNLDRTAPYFME
DGVWRMYWRNVPLGKPVRIAAYCNREWYKADVTFIKR*
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spliced messenger RNA

>Gchil2402.t1 ID=Gchil2402.t1|Name=Gchil2402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004400_pilon:578424..579587- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAACATGCCATACTCCTTCGACGAGGACGCCCCAAAGGACTATTG
GCTACACTTTCCAGCCGGCAGCAAGAACGGTTCCCCTGGCGCCGCACTGC
ACAGTCAAGTAGTTGCTGCCGGCAAGCGCGGTTGGACCCCCTACGACCCC
TATCGTCCGGACTTTCGCTGGCGCGCCGGTGTGTGTGGCGATGCCGTCGA
CGGTCCGCAACATCACCTACGCGGCGGAAAGTATTACTACGACGCTAAGA
TCGTCGCGCGCTACTCTCAGGGCAGCGTCATTGGTGTTGGTACCTCCATT
GTCACCCATCACAACGGCTACATGGAGATGCATTTATGTGATCCGTCCAA
ATGCGGCGGCGAGATTAGTCGACGTTGCTTCCTCTCCGGCGCCTGTGTAC
AGTTGCATCGCGCGTACAACCCCGTGTGCGAGAGCGGGAAGTCTCCGCAT
TGCGGGCCCATCGACCATACCTACCCGGGTCGCTGGTACATGCCGTGCGA
CGCCAAAAACGGTTGGAATGACTATCGGCCTGCGTACGCTACTTTCAAGT
TGCCCAACCACTTCTACTGCAAGCACTGTGTGTTGCAATGGTATTGGGTT
GCCGCCAATACTTGCAACCCGCCAGGCGTGCTGGACTATTTTGATAGCAA
AGACCGCCCGACTTGGGGAACCTGTCGCGGACAGGGCGGTGCCAAGGGCG
GTGTCACGCGCATTCAACCGCCCTGCGGCGGCAACTTGTTCCCGGAGGAG
TACATTCAGTGTGCTGATATATCCATCGACACCGTGCCACGCGCCAGAAG
TGCCCCGAGATCCAATTTGCCTAGTCCGAAGCCCACGCCGTGGGCGAGAC
ATAGTCTGTCCAAACTCATGCTGTGGGCCGACCGCCAGCCATTGAGAGAG
CTTGTTGACGGAGCAGTGATTAATATTGCCATGTATGATGGTATCAAAAT
CGAAGCTCAGCTTGTTTCTGGCGTCAAGACACCAGCTGTTCAATTCTTTG
TCAATGGTAAGAAAATGAACCTGGATAGAACTGCACCGTACTTCATGGAG
GACGGTGTTTGGAGAATGTATTGGAGGAACGTTCCTCTGGGCAAACCGGT
GCGAATCGCCGCGTATTGCAATCGGGAATGGTACAAGGCAGATGTAACCT
TTATCAAGAGATGA
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protein sequence of Gchil2402.t1

>Gchil2402.t1 ID=Gchil2402.t1|Name=Gchil2402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=388bp
MPNMPYSFDEDAPKDYWLHFPAGSKNGSPGAALHSQVVAAGKRGWTPYDP
YRPDFRWRAGVCGDAVDGPQHHLRGGKYYYDAKIVARYSQGSVIGVGTSI
VTHHNGYMEMHLCDPSKCGGEISRRCFLSGACVQLHRAYNPVCESGKSPH
CGPIDHTYPGRWYMPCDAKNGWNDYRPAYATFKLPNHFYCKHCVLQWYWV
AANTCNPPGVLDYFDSKDRPTWGTCRGQGGAKGGVTRIQPPCGGNLFPEE
YIQCADISIDTVPRARSAPRSNLPSPKPTPWARHSLSKLMLWADRQPLRE
LVDGAVINIAMYDGIKIEAQLVSGVKTPAVQFFVNGKKMNLDRTAPYFME
DGVWRMYWRNVPLGKPVRIAAYCNREWYKADVTFIKR*
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mRNA from alignment at tig00004400_pilon:578424..579587-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2402.t1 ID=Gchil2402.t1|Name=Gchil2402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004400_pilon:578424..579587- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTAACATGCCATACTCCTTCGACGAGGACGCCCCAAAGGACTATTG
GCTACACTTTCCAGCCGGCAGCAAGAACGGTTCCCCTGGCGCCGCACTGC
ACAGTCAAGTAGTTGCTGCCGGCAAGCGCGGTTGGACCCCCTACGACCCC
TATCGTCCGGACTTTCGCTGGCGCGCCGGTGTGTGTGGCGATGCCGTCGA
CGGTCCGCAACATCACCTACGCGGCGGAAAGTATTACTACGACGCTAAGA
TCGTCGCGCGCTACTCTCAGGGCAGCGTCATTGGTGTTGGTACCTCCATT
GTCACCCATCACAACGGCTACATGGAGATGCATTTATGTGATCCGTCCAA
ATGCGGCGGCGAGATTAGTCGACGTTGCTTCCTCTCCGGCGCCTGTGTAC
AGTTGCATCGCGCGTACAACCCCGTGTGCGAGAGCGGGAAGTCTCCGCAT
TGCGGGCCCATCGACCATACCTACCCGGGTCGCTGGTACATGCCGTGCGA
CGCCAAAAACGGTTGGAATGACTATCGGCCTGCGTACGCTACTTTCAAGT
TGCCCAACCACTTCTACTGCAAGCACTGTGTGTTGCAATGGTATTGGGTT
GCCGCCAATACTTGCAACCCGCCAGGCGTGCTGGACTATTTTGATAGCAA
AGACCGCCCGACTTGGGGAACCTGTCGCGGACAGGGCGGTGCCAAGGGCG
GTGTCACGCGCATTCAACCGCCCTGCGGCGGCAACTTGTTCCCGGAGGAG
TACATTCAGTGTGCTGATATATCCATCGACACCGTGCCACGCGCCAGAAG
TGCCCCGAGATCCAATTTGCCTAGTCCGAAGCCCACGCCGTGGGCGAGAC
ATAGTCTGTCCAAACTCATGCTGTGGGCCGACCGCCAGCCATTGAGAGAG
CTTGTTGACGGAGCAGTGATTAATATTGCCATGTATGATGGTATCAAAAT
CGAAGCTCAGCTTGTTTCTGGCGTCAAGACACCAGCTGTTCAATTCTTTG
TCAATGGTAAGAAAATGAACCTGGATAGAACTGCACCGTACTTCATGGAG
GACGGTGTTTGGAGAATGTATTGGAGGAACGTTCCTCTGGGCAAACCGGT
GCGAATCGCCGCGTATTGCAATCGGGAATGGTACAAGGCAGATGTAACCT
TTATCAAGAGATGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:578424..579587-

>Gchil2402.t1 ID=Gchil2402.t1|Name=Gchil2402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00004400_pilon:578424..579587- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTAACATGCCATACTCCTTCGACGAGGACGCCCCAAAGGACTATTG
GCTACACTTTCCAGCCGGCAGCAAGAACGGTTCCCCTGGCGCCGCACTGC
ACAGTCAAGTAGTTGCTGCCGGCAAGCGCGGTTGGACCCCCTACGACCCC
TATCGTCCGGACTTTCGCTGGCGCGCCGGTGTGTGTGGCGATGCCGTCGA
CGGTCCGCAACATCACCTACGCGGCGGAAAGTATTACTACGACGCTAAGA
TCGTCGCGCGCTACTCTCAGGGCAGCGTCATTGGTGTTGGTACCTCCATT
GTCACCCATCACAACGGCTACATGGAGATGCATTTATGTGATCCGTCCAA
ATGCGGCGGCGAGATTAGTCGACGTTGCTTCCTCTCCGGCGCCTGTGTAC
AGTTGCATCGCGCGTACAACCCCGTGTGCGAGAGCGGGAAGTCTCCGCAT
TGCGGGCCCATCGACCATACCTACCCGGGTCGCTGGTACATGCCGTGCGA
CGCCAAAAACGGTTGGAATGACTATCGGCCTGCGTACGCTACTTTCAAGT
TGCCCAACCACTTCTACTGCAAGCACTGTGTGTTGCAATGGTATTGGGTT
GCCGCCAATACTTGCAACCCGCCAGGCGTGCTGGACTATTTTGATAGCAA
AGACCGCCCGACTTGGGGAACCTGTCGCGGACAGGGCGGTGCCAAGGGCG
GTGTCACGCGCATTCAACCGCCCTGCGGCGGCAACTTGTTCCCGGAGGAG
TACATTCAGTGTGCTGATATATCCATCGACACCGTGCCACGCGCCAGAAG
TGCCCCGAGATCCAATTTGCCTAGTCCGAAGCCCACGCCGTGGGCGAGAC
ATAGTCTGTCCAAACTCATGCTGTGGGCCGACCGCCAGCCATTGAGAGAG
CTTGTTGACGGAGCAGTGATTAATATTGCCATGTATGATGGTATCAAAAT
CGAAGCTCAGCTTGTTTCTGGCGTCAAGACACCAGCTGTTCAATTCTTTG
TCAATGGTAAGAAAATGAACCTGGATAGAACTGCACCGTACTTCATGGAG
GACGGTGTTTGGAGAATGTATTGGAGGAACGTTCCTCTGGGCAAACCGGT
GCGAATCGCCGCGTATTGCAATCGGGAATGGTACAAGGCAGATGTAACCT
TTATCAAGAGATGA
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