Gchil2401.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2401.t1
Unique NameGchil2401.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:479848..480261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2401Gchil2401Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 479848..480261 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2401.t1.start1Gchil2401.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 479848..479850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2401.t1.CDS1Gchil2401.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 479848..480261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2401.t1.exon1Gchil2401.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 479848..480261 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2401.t1.stop1Gchil2401.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 480259..480261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2401.t1Gchil2401.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 479848..480261 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2401.t1 ID=Gchil2401.t1|Name=Gchil2401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=138bp
MMNSLITFFFTVALIAVAVSANTDSYPISKSDEPNAVAPIGADSKPANAI
NFVSRAEDCCYTDACTGVRTCVPANTFFTDGCGRTYNVSSSCKLTRKRCC
YSDACNSERICREAITVFTDSCGNSYVVQANCNLKRV*
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spliced messenger RNA

>Gchil2401.t1 ID=Gchil2401.t1|Name=Gchil2401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00004400_pilon:479848..480261+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAACAGCTTGATCACTTTCTTCTTCACCGTTGCACTCATCGCAGT
CGCTGTTTCTGCAAACACCGATTCGTACCCCATCTCCAAGTCCGATGAAC
CCAATGCCGTGGCGCCCATTGGTGCTGATTCCAAGCCCGCCAATGCCATC
AACTTCGTGTCCCGAGCAGAGGACTGTTGCTACACAGATGCTTGCACCGG
AGTTCGTACTTGTGTGCCGGCTAACACATTCTTTACCGATGGGTGCGGAA
GGACCTACAACGTCTCTTCTTCCTGCAAGCTCACGCGCAAACGCTGCTGT
TACTCTGATGCCTGTAATAGTGAGCGCATTTGCCGTGAGGCTATCACCGT
GTTCACGGATTCCTGTGGAAACAGTTATGTTGTGCAAGCCAACTGCAACC
TCAAAAGGGTTTAG
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protein sequence of Gchil2401.t1

>Gchil2401.t1 ID=Gchil2401.t1|Name=Gchil2401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=138bp
MMNSLITFFFTVALIAVAVSANTDSYPISKSDEPNAVAPIGADSKPANAI
NFVSRAEDCCYTDACTGVRTCVPANTFFTDGCGRTYNVSSSCKLTRKRCC
YSDACNSERICREAITVFTDSCGNSYVVQANCNLKRV*
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mRNA from alignment at tig00004400_pilon:479848..480261+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2401.t1 ID=Gchil2401.t1|Name=Gchil2401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00004400_pilon:479848..480261+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGAACAGCTTGATCACTTTCTTCTTCACCGTTGCACTCATCGCAGT
CGCTGTTTCTGCAAACACCGATTCGTACCCCATCTCCAAGTCCGATGAAC
CCAATGCCGTGGCGCCCATTGGTGCTGATTCCAAGCCCGCCAATGCCATC
AACTTCGTGTCCCGAGCAGAGGACTGTTGCTACACAGATGCTTGCACCGG
AGTTCGTACTTGTGTGCCGGCTAACACATTCTTTACCGATGGGTGCGGAA
GGACCTACAACGTCTCTTCTTCCTGCAAGCTCACGCGCAAACGCTGCTGT
TACTCTGATGCCTGTAATAGTGAGCGCATTTGCCGTGAGGCTATCACCGT
GTTCACGGATTCCTGTGGAAACAGTTATGTTGTGCAAGCCAACTGCAACC
TCAAAAGGGTTTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:479848..480261+

>Gchil2401.t1 ID=Gchil2401.t1|Name=Gchil2401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=414bp|location=Sequence derived from alignment at tig00004400_pilon:479848..480261+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGAACAGCTTGATCACTTTCTTCTTCACCGTTGCACTCATCGCAGT
CGCTGTTTCTGCAAACACCGATTCGTACCCCATCTCCAAGTCCGATGAAC
CCAATGCCGTGGCGCCCATTGGTGCTGATTCCAAGCCCGCCAATGCCATC
AACTTCGTGTCCCGAGCAGAGGACTGTTGCTACACAGATGCTTGCACCGG
AGTTCGTACTTGTGTGCCGGCTAACACATTCTTTACCGATGGGTGCGGAA
GGACCTACAACGTCTCTTCTTCCTGCAAGCTCACGCGCAAACGCTGCTGT
TACTCTGATGCCTGTAATAGTGAGCGCATTTGCCGTGAGGCTATCACCGT
GTTCACGGATTCCTGTGGAAACAGTTATGTTGTGCAAGCCAACTGCAACC
TCAAAAGGGTTTAG
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