Gchil2399.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2399.t1
Unique NameGchil2399.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:432970..433563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5039.XP_002625327.1
PFAMsDUF962
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0030149,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046466,GO:0046519,GO:0046521,GO:0071704,GO:0097164,GO:0098827,GO:1901564,GO:1901565,GO:1901575
Evalue3.85e-09
EggNOG OGsCOG4539@1|root,KOG3292@2759|Eukaryota,39KJ6@33154|Opisthokonta,3P19U@4751|Fungi,3QK4F@4890|Ascomycota,20GWC@147545|Eurotiomycetes,3B34B@33183|Onygenales
DescriptionDUF962 domain-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2399Gchil2399Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 432970..433563 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2399.t1.start1Gchil2399.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 432970..432972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2399.t1.CDS1Gchil2399.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 432970..433563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2399.t1.exon1Gchil2399.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 432970..433563 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2399.t1.stop1Gchil2399.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 433561..433563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2399.t1Gchil2399.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 432970..433563 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2399.t1 ID=Gchil2399.t1|Name=Gchil2399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=198bp
MLKPSPQLPPPPPPALRPVRDWFDLGEVYAAYKADHSDPRNMALHTLADP
LISIPLLAVLWLVPLPANVPLPPLVTTCLALYYARLHAGVGVAMVPVHGA
YVLAAAALRERLGVFGTLAAAVAANVVGWHMLFWSHARFERNRPTITNNF
VLACLSEPITIFLDVMFAVGAFPALRARLADACVHYNARLKTINAYT*
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spliced messenger RNA

>Gchil2399.t1 ID=Gchil2399.t1|Name=Gchil2399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004400_pilon:432970..433563+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGCCTTcgccgcagctgccgccgccgccgccgccagcgctccg
ccccgTGCGTGACTGGTTCGACCTGGGCGAGGTGTACGCGGCGTACAAGG
CCGATCACTCGGACCCGCGCAACATGGCGCTGCACACATTGGCCGACCCG
CTCATCAGCATCCCGCTGCTGGCCGTGCTGTGGTTGGTGCCGCTGCCGGC
CAACGTGCCACTGCCGCCGCTGGTGACGACGTGCCTCGCGCTGTACTACG
CGCGCCTGCACGCGGGCGTCGGCGTGGCCATGGTGCCCGTACACGGCGCG
TACGTGCTGGCCGCCGCCGCGCTGCGTGAGCGGCTGGGCGTCTTCGGCAC
GCTGGCGGCGGCCGTGGCGGCTAACGTTGTCGGCTGGCACATGTTGTTTT
GGAGCCACGCGCGCTTCGAGCGCAACCGTCCCACCATCACTAACAATTTT
GTGCTGGCGTGTTTGTCCGAACCCATCACCATCTTTCTGGATGTCATGTT
TGCCGTCGGTGCGTTCCCCGCACTGCGTGCGCGCCTCGCCGACGCATGTG
TGCACTACAACGCCCGCTTGAAGACAATCAACGCTTATACGTGA
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protein sequence of Gchil2399.t1

>Gchil2399.t1 ID=Gchil2399.t1|Name=Gchil2399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=198bp
MLKPSPQLPPPPPPALRPVRDWFDLGEVYAAYKADHSDPRNMALHTLADP
LISIPLLAVLWLVPLPANVPLPPLVTTCLALYYARLHAGVGVAMVPVHGA
YVLAAAALRERLGVFGTLAAAVAANVVGWHMLFWSHARFERNRPTITNNF
VLACLSEPITIFLDVMFAVGAFPALRARLADACVHYNARLKTINAYT*
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mRNA from alignment at tig00004400_pilon:432970..433563+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2399.t1 ID=Gchil2399.t1|Name=Gchil2399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004400_pilon:432970..433563+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAAGCCTTcgccgcagctgccgccgccgccgccgccagcgctccg
ccccgTGCGTGACTGGTTCGACCTGGGCGAGGTGTACGCGGCGTACAAGG
CCGATCACTCGGACCCGCGCAACATGGCGCTGCACACATTGGCCGACCCG
CTCATCAGCATCCCGCTGCTGGCCGTGCTGTGGTTGGTGCCGCTGCCGGC
CAACGTGCCACTGCCGCCGCTGGTGACGACGTGCCTCGCGCTGTACTACG
CGCGCCTGCACGCGGGCGTCGGCGTGGCCATGGTGCCCGTACACGGCGCG
TACGTGCTGGCCGCCGCCGCGCTGCGTGAGCGGCTGGGCGTCTTCGGCAC
GCTGGCGGCGGCCGTGGCGGCTAACGTTGTCGGCTGGCACATGTTGTTTT
GGAGCCACGCGCGCTTCGAGCGCAACCGTCCCACCATCACTAACAATTTT
GTGCTGGCGTGTTTGTCCGAACCCATCACCATCTTTCTGGATGTCATGTT
TGCCGTCGGTGCGTTCCCCGCACTGCGTGCGCGCCTCGCCGACGCATGTG
TGCACTACAACGCCCGCTTGAAGACAATCAACGCTTATACGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:432970..433563+

>Gchil2399.t1 ID=Gchil2399.t1|Name=Gchil2399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00004400_pilon:432970..433563+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAAGCCTTcgccgcagctgccgccgccgccgccgccagcgctccg
ccccgTGCGTGACTGGTTCGACCTGGGCGAGGTGTACGCGGCGTACAAGG
CCGATCACTCGGACCCGCGCAACATGGCGCTGCACACATTGGCCGACCCG
CTCATCAGCATCCCGCTGCTGGCCGTGCTGTGGTTGGTGCCGCTGCCGGC
CAACGTGCCACTGCCGCCGCTGGTGACGACGTGCCTCGCGCTGTACTACG
CGCGCCTGCACGCGGGCGTCGGCGTGGCCATGGTGCCCGTACACGGCGCG
TACGTGCTGGCCGCCGCCGCGCTGCGTGAGCGGCTGGGCGTCTTCGGCAC
GCTGGCGGCGGCCGTGGCGGCTAACGTTGTCGGCTGGCACATGTTGTTTT
GGAGCCACGCGCGCTTCGAGCGCAACCGTCCCACCATCACTAACAATTTT
GTGCTGGCGTGTTTGTCCGAACCCATCACCATCTTTCTGGATGTCATGTT
TGCCGTCGGTGCGTTCCCCGCACTGCGTGCGCGCCTCGCCGACGCATGTG
TGCACTACAACGCCCGCTTGAAGACAATCAACGCTTATACGTGA
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