Gchil2397.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2397.t1
Unique NameGchil2397.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:429664..430887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2397Gchil2397Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 429664..430887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2397.t1Gchil2397.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 429664..430887 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2397.t1.stop1Gchil2397.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 429664..429666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2397.t1.CDS1Gchil2397.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 429664..430350 -
Gchil2397.t1.CDS2Gchil2397.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 430438..430586 -
Gchil2397.t1.CDS3Gchil2397.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 430674..430887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2397.t1.exon1Gchil2397.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 429664..430350 -
Gchil2397.t1.exon2Gchil2397.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 430438..430586 -
Gchil2397.t1.exon3Gchil2397.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 430674..430887 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2397.t1.intron1Gchil2397.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 430351..430437 -
Gchil2397.t1.intron2Gchil2397.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 430587..430673 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2397.t1.start1Gchil2397.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 430885..430887 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2397.t1 ID=Gchil2397.t1|Name=Gchil2397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=350bp
MSNYKHSERFIVFNSLLFALVYSVIFNLSAASVIPDLFHWLENGEQAAQL
VVNATTNHLIRFSGSEELILGPPSEDSDLEICGHSKNGTTPCSRVVCEEW
LTLSKVTNVGGSRCICECCNGQKATCEVTFNPAGTFLGCGCVGSITGDKE
VSSTTVDEDTLETVNLTNSENETEEAGTVPDCVETAWLKQHGFSHGILHE
RCSSSVLCIPGLPCATAGHLLRECDAVTISCNLRTYEHICEQRDDCMYRC
AEVSRLSNSVDWSVVRSAGPNGSSISLTSLSVHPYGGRLSVSYGVAYVAD
LLNTHGFGHICDFVVLSMLGIGEMGVGIREMLGQLREEYLTWCSALLTI*
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spliced messenger RNA

>Gchil2397.t1 ID=Gchil2397.t1|Name=Gchil2397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00004400_pilon:429664..430887- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAACTACAAACATTCAGAGCGATTCATCGTCTTCAATTCGCTGCT
CTTCGCCTTGGTCTATTCCGTAATCTTCAACCTCTCCGCTGCCAGTGTCA
TCCCCGACTTGTTCCATTGGTTGGAAAACGGAGAGCAAGCTGCTCAATTG
GTTGTAAATGCCACTACTAATCATCTCATAAGATTCTCAGGGTCTGAAGA
GCTCATCTTGGGTCCGCCGAGCGAGGATTCCGATTTGGAAATCTGCGGCC
ATTCAAAGAATGGAACTACGCCGTGTTCTAGGGTGGTATGCGAAGAATGG
CTTACCCTATCAAAAGTTACGAATGTGGGTGGAAGTCGTTGCATCTGTGA
ATGTTGCAATGGGCAAAAGGCCACTTGCGAAGTTACTTTCAATCCGGCCG
GTACCTTCTTAGGGTGTGGCTGCGTTGGAAGCATTACTGGTGATAAGGAG
GTCTCTTCCACTACAGTCGATGAAGACACTCTGGAGACCGTTAATCTAAC
TAACTCTGAAAATGAAACTGAAGAGGCTGGAACTGTGCCTGACTGCGTGG
AGACTGCATGGCTTAAACAGCACGGTTTCAGTCACGGAATTCTTCACGAG
AGATGTTCTTCATCAGTTCTGTGCATTCCCGGTCTACCATGTGCCACAGC
AGGACATCTTTTACGAGAATGTGACGCTGTCACTATATCCTGTAACCTCC
GCACCTACGAACACATATGCGAACAGAGAGATGATTGCATGTATCGCTGC
GCTGAAGTATCGCGCCTATCAAACTCCGTGGACTGGAGCGTGGTCAGAAG
CGCTGGACCAAACGGCAGTTCTATATCACTCACAAGCCTGAGTGTCCATC
CGTATGGGGGACGCTTATCGGTTTCGTATGGTGTGGCGTACGTAGCAGAC
TTGCTCAATACTCATGGGTTTGGGCATATCTGCGATTTCGTGGTGCTCTC
AATGCTTGGAATTGGAGAGATGGGAGTGGGTATTAGAGAAATGCTAGGCC
AACTCCGGGAGGAGTATCTAACCTGGTGCTCAGCGTTGCTAACCATCTGA
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protein sequence of Gchil2397.t1

>Gchil2397.t1 ID=Gchil2397.t1|Name=Gchil2397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=350bp
MSNYKHSERFIVFNSLLFALVYSVIFNLSAASVIPDLFHWLENGEQAAQL
VVNATTNHLIRFSGSEELILGPPSEDSDLEICGHSKNGTTPCSRVVCEEW
LTLSKVTNVGGSRCICECCNGQKATCEVTFNPAGTFLGCGCVGSITGDKE
VSSTTVDEDTLETVNLTNSENETEEAGTVPDCVETAWLKQHGFSHGILHE
RCSSSVLCIPGLPCATAGHLLRECDAVTISCNLRTYEHICEQRDDCMYRC
AEVSRLSNSVDWSVVRSAGPNGSSISLTSLSVHPYGGRLSVSYGVAYVAD
LLNTHGFGHICDFVVLSMLGIGEMGVGIREMLGQLREEYLTWCSALLTI*
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mRNA from alignment at tig00004400_pilon:429664..430887-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2397.t1 ID=Gchil2397.t1|Name=Gchil2397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00004400_pilon:429664..430887- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAACTACAAACATTCAGAGCGATTCATCGTCTTCAATTCGCTGCT
CTTCGCCTTGGTCTATTCCGTAATCTTCAACCTCTCCGCTGCCAGTGTCA
TCCCCGACTTGTTCCATTGGTTGGAAAACGGAGAGCAAGCTGCTCAATTG
GTTGTAAATGCCACTACTAATCATCTCATAAGATTCTCAGGGTCTGAAGA
GCTCATCTTGGGTCGTAGGTTTCCCCCATCTCTGCACTGCACACAAGTTC
TGGTTTTCGATTGATTCTGACTTTGAAATCATTCTTTTTGTTTCGCGTCA
GCGCCGAGCGAGGATTCCGATTTGGAAATCTGCGGCCATTCAAAGAATGG
AACTACGCCGTGTTCTAGGGTGGTATGCGAAGAATGGCTTACCCTATCAA
AAGTTACGAATGTGGGTGGAAGTCGTTGCATCTGTGAATGTTGCAATGGG
GTAAGTTTGCTTGTGTACCTTTCTGGCATGACATACCAAATGCTTTTCAT
CAATATCTCTAACTCATTGTTTTCCTACCACCCGTAGCAAAAGGCCACTT
GCGAAGTTACTTTCAATCCGGCCGGTACCTTCTTAGGGTGTGGCTGCGTT
GGAAGCATTACTGGTGATAAGGAGGTCTCTTCCACTACAGTCGATGAAGA
CACTCTGGAGACCGTTAATCTAACTAACTCTGAAAATGAAACTGAAGAGG
CTGGAACTGTGCCTGACTGCGTGGAGACTGCATGGCTTAAACAGCACGGT
TTCAGTCACGGAATTCTTCACGAGAGATGTTCTTCATCAGTTCTGTGCAT
TCCCGGTCTACCATGTGCCACAGCAGGACATCTTTTACGAGAATGTGACG
CTGTCACTATATCCTGTAACCTCCGCACCTACGAACACATATGCGAACAG
AGAGATGATTGCATGTATCGCTGCGCTGAAGTATCGCGCCTATCAAACTC
CGTGGACTGGAGCGTGGTCAGAAGCGCTGGACCAAACGGCAGTTCTATAT
CACTCACAAGCCTGAGTGTCCATCCGTATGGGGGACGCTTATCGGTTTCG
TATGGTGTGGCGTACGTAGCAGACTTGCTCAATACTCATGGGTTTGGGCA
TATCTGCGATTTCGTGGTGCTCTCAATGCTTGGAATTGGAGAGATGGGAG
TGGGTATTAGAGAAATGCTAGGCCAACTCCGGGAGGAGTATCTAACCTGG
TGCTCAGCGTTGCTAACCATCTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:429664..430887-

>Gchil2397.t1 ID=Gchil2397.t1|Name=Gchil2397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00004400_pilon:429664..430887- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAACTACAAACATTCAGAGCGATTCATCGTCTTCAATTCGCTGCT
CTTCGCCTTGGTCTATTCCGTAATCTTCAACCTCTCCGCTGCCAGTGTCA
TCCCCGACTTGTTCCATTGGTTGGAAAACGGAGAGCAAGCTGCTCAATTG
GTTGTAAATGCCACTACTAATCATCTCATAAGATTCTCAGGGTCTGAAGA
GCTCATCTTGGGTCCGCCGAGCGAGGATTCCGATTTGGAAATCTGCGGCC
ATTCAAAGAATGGAACTACGCCGTGTTCTAGGGTGGTATGCGAAGAATGG
CTTACCCTATCAAAAGTTACGAATGTGGGTGGAAGTCGTTGCATCTGTGA
ATGTTGCAATGGGCAAAAGGCCACTTGCGAAGTTACTTTCAATCCGGCCG
GTACCTTCTTAGGGTGTGGCTGCGTTGGAAGCATTACTGGTGATAAGGAG
GTCTCTTCCACTACAGTCGATGAAGACACTCTGGAGACCGTTAATCTAAC
TAACTCTGAAAATGAAACTGAAGAGGCTGGAACTGTGCCTGACTGCGTGG
AGACTGCATGGCTTAAACAGCACGGTTTCAGTCACGGAATTCTTCACGAG
AGATGTTCTTCATCAGTTCTGTGCATTCCCGGTCTACCATGTGCCACAGC
AGGACATCTTTTACGAGAATGTGACGCTGTCACTATATCCTGTAACCTCC
GCACCTACGAACACATATGCGAACAGAGAGATGATTGCATGTATCGCTGC
GCTGAAGTATCGCGCCTATCAAACTCCGTGGACTGGAGCGTGGTCAGAAG
CGCTGGACCAAACGGCAGTTCTATATCACTCACAAGCCTGAGTGTCCATC
CGTATGGGGGACGCTTATCGGTTTCGTATGGTGTGGCGTACGTAGCAGAC
TTGCTCAATACTCATGGGTTTGGGCATATCTGCGATTTCGTGGTGCTCTC
AATGCTTGGAATTGGAGAGATGGGAGTGGGTATTAGAGAAATGCTAGGCC
AACTCCGGGAGGAGTATCTAACCTGGTGCTCAGCGTTGCTAACCATCTGA
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