Gchil2395.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2395.t1
Unique NameGchil2395.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:388325..388945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002681941.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363
Evalue1.44e-06
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Descriptionubiquitin modification-dependent histone binding
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2395Gchil2395Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 388325..388945 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2395.t1.start1Gchil2395.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 388325..388327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2395.t1.CDS1Gchil2395.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 388325..388945 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2395.t1.exon1Gchil2395.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 388325..388945 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2395.t1.stop1Gchil2395.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 388943..388945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2395.t1Gchil2395.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 388325..388945 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2395.t1 ID=Gchil2395.t1|Name=Gchil2395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=207bp
MRRHGKGKWKEIAADVGSRTANQCQSHAQKYFLRLAKSDAERKKKSIHDI
HDSIEDPKPIPANHPSPPSQRKPAPIAPASLVPQCPVPLALRPTPIAPAT
FNYAALLPHLLAAPLSDASRAAIIAPPPAPRVRVTVHINGHAKGGMTLLV
PDTLPQFFHTAASKLRSQLAFSRIFTRSGGEITSVDELCQDDMLWLSAGN
DFLTPK*
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spliced messenger RNA

>Gchil2395.t1 ID=Gchil2395.t1|Name=Gchil2395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00004400_pilon:388325..388945+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCCACGGCAAGGGAAAGTGGAAGGAGATTGCTGCCGACGTCGG
CTCCCGCACTGCTAATCAATGCCAGTCCCACGCTCAAAAGTACTTTCTCC
GTCTGGCCAAATCCGACGCAGAGCGCAAAAAGAAGAGCATTCACGACATT
CACGATTCCATCGAAGATCCAAAACCTATCCCCGCCAATCACCCTTCGCC
GCCATCGCAGCGCAAACCCGCCCCCATTGCCCCCGCCTCGCTTGTGCCCC
AGTGCCCCGTGCCGCTCGCGCTGCGTCCCACCCCCATCGCACCCGCCACC
TTCAACTACGCCGCGCTTTTACCGCATCTGCTCGCAGCTCCGCTGTCCGA
CGCGTCGCGCGCCGCCATCATTGCACCCCCACCTGCCCCGCGCGTGCGCG
TCACCGTCCATATCAACGGCCACGCCAAGGGCGGCATGACGCTACTCGTC
CCGGACACCCTGCCCCAATTCTTTCACACCGCTGCGTCCAAGCTTCGTTC
TCAGCTTGCGTTTAGCAGGATTTTCACGCGCAGCGGCGGCGAGATCACCA
GCGTCGACGAGCTCTGCCAGGACGACATGCTGTGGCTTTCTGCCGGCAAC
GACTTTCTCACTCCCAAGTAG
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protein sequence of Gchil2395.t1

>Gchil2395.t1 ID=Gchil2395.t1|Name=Gchil2395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=207bp
MRRHGKGKWKEIAADVGSRTANQCQSHAQKYFLRLAKSDAERKKKSIHDI
HDSIEDPKPIPANHPSPPSQRKPAPIAPASLVPQCPVPLALRPTPIAPAT
FNYAALLPHLLAAPLSDASRAAIIAPPPAPRVRVTVHINGHAKGGMTLLV
PDTLPQFFHTAASKLRSQLAFSRIFTRSGGEITSVDELCQDDMLWLSAGN
DFLTPK*
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mRNA from alignment at tig00004400_pilon:388325..388945+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2395.t1 ID=Gchil2395.t1|Name=Gchil2395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00004400_pilon:388325..388945+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCGCCACGGCAAGGGAAAGTGGAAGGAGATTGCTGCCGACGTCGG
CTCCCGCACTGCTAATCAATGCCAGTCCCACGCTCAAAAGTACTTTCTCC
GTCTGGCCAAATCCGACGCAGAGCGCAAAAAGAAGAGCATTCACGACATT
CACGATTCCATCGAAGATCCAAAACCTATCCCCGCCAATCACCCTTCGCC
GCCATCGCAGCGCAAACCCGCCCCCATTGCCCCCGCCTCGCTTGTGCCCC
AGTGCCCCGTGCCGCTCGCGCTGCGTCCCACCCCCATCGCACCCGCCACC
TTCAACTACGCCGCGCTTTTACCGCATCTGCTCGCAGCTCCGCTGTCCGA
CGCGTCGCGCGCCGCCATCATTGCACCCCCACCTGCCCCGCGCGTGCGCG
TCACCGTCCATATCAACGGCCACGCCAAGGGCGGCATGACGCTACTCGTC
CCGGACACCCTGCCCCAATTCTTTCACACCGCTGCGTCCAAGCTTCGTTC
TCAGCTTGCGTTTAGCAGGATTTTCACGCGCAGCGGCGGCGAGATCACCA
GCGTCGACGAGCTCTGCCAGGACGACATGCTGTGGCTTTCTGCCGGCAAC
GACTTTCTCACTCCCAAGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:388325..388945+

>Gchil2395.t1 ID=Gchil2395.t1|Name=Gchil2395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00004400_pilon:388325..388945+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCGCCACGGCAAGGGAAAGTGGAAGGAGATTGCTGCCGACGTCGG
CTCCCGCACTGCTAATCAATGCCAGTCCCACGCTCAAAAGTACTTTCTCC
GTCTGGCCAAATCCGACGCAGAGCGCAAAAAGAAGAGCATTCACGACATT
CACGATTCCATCGAAGATCCAAAACCTATCCCCGCCAATCACCCTTCGCC
GCCATCGCAGCGCAAACCCGCCCCCATTGCCCCCGCCTCGCTTGTGCCCC
AGTGCCCCGTGCCGCTCGCGCTGCGTCCCACCCCCATCGCACCCGCCACC
TTCAACTACGCCGCGCTTTTACCGCATCTGCTCGCAGCTCCGCTGTCCGA
CGCGTCGCGCGCCGCCATCATTGCACCCCCACCTGCCCCGCGCGTGCGCG
TCACCGTCCATATCAACGGCCACGCCAAGGGCGGCATGACGCTACTCGTC
CCGGACACCCTGCCCCAATTCTTTCACACCGCTGCGTCCAAGCTTCGTTC
TCAGCTTGCGTTTAGCAGGATTTTCACGCGCAGCGGCGGCGAGATCACCA
GCGTCGACGAGCTCTGCCAGGACGACATGCTGTGGCTTTCTGCCGGCAAC
GACTTTCTCACTCCCAAGTAG
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