Gchil2388.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2388.t1
Unique NameGchil2388.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:309784..311231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX48006
PFAMsFAD_binding_3
Max annot lvl2759|Eukaryota
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
Evalue9.37e-61
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
EC1.14.13.1
DescriptionFAD binding
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2388Gchil2388Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 309784..311231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2388.t1Gchil2388.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 309784..311231 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2388.t1.start1Gchil2388.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 309784..309786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2388.t1.CDS1Gchil2388.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 309784..310810 +
Gchil2388.t1.CDS2Gchil2388.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 310924..311231 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2388.t1.exon1Gchil2388.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 309784..310810 +
Gchil2388.t1.exon2Gchil2388.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 310924..311231 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2388.t1.intron1Gchil2388.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 310811..310923 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2388.t1.stop1Gchil2388.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 311229..311231 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2388.t1 ID=Gchil2388.t1|Name=Gchil2388.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=445bp
MAFAQLAHLPTKVPCVKTDSCQARPSWTASAKPRRVGIAGAGIAGLSTAL
ALIRTPGTGVEQVDIFEPRLDVDSGKGGALNLNGASAILGSVYGVPIQDI
GSSLDRVIAREVAGSTLFEVDVGRVLKSSKAATKALSMNGRHSFMAVMRE
DMLSLLAKEIEHQVTINRGESNRVTGVHQQGSDTHFILKDGTLSDPFDLV
IGADGVRSNVRSHVSKQPTEPIYSGIRIQWAIANGSMLPQGHLEQWFGDG
VYVLRYSAGSQDKPYEIIASSFRKRESALENEGYEQDKFVRKDFRERLHR
SSMPTSVTDVLERSERLIETSVYRQNLPSIWHRGSCCLVGDSAHAMPPYL
GQGANQAVQDAHCLALALSKIDMQHGTLSDALESYERIRRVPVQAVLQTS
RLVSFFEIQDGKIQSQARNNFFRILGIAGVPGRTLIQAAIPRIS*
back to top

spliced messenger RNA

>Gchil2388.t1 ID=Gchil2388.t1|Name=Gchil2388.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00004400_pilon:309784..311231+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTTGCTCAACTTGCTCACTTGCCCACAAAAGTTCCGTGCGTTAA
AACTGATTCTTGTCAGGCAAGGCCTTCATGGACGGCGTCTGCAAAGCCTC
GTCGCGTAGGAATTGCAGGAGCAGGGATTGCAGGTCTCTCCACTGCTCTA
GCCCTCATACGCACACCTGGAACAGGAGTTGAACAAGTGGATATATTTGA
GCCACGTTTGGATGTGGATTCCGGTAAAGGAGGAGCGTTGAATCTCAATG
GAGCGTCAGCTATTCTCGGGAGTGTGTACGGTGTTCCCATCCAGGACATT
GGCTCATCTCTTGATAGAGTGATAGCTAGAGAAGTGGCCGGTAGCACTCT
CTTTGAGGTCGATGTTGGTCGTGTTCTGAAATCCTCCAAAGCAGCGACCA
AAGCTCTTTCAATGAACGGGCGTCATTCGTTCATGGCAGTGATGAGAGAA
GACATGCTGTCATTGCTTGCCAAAGAAATAGAACACCAAGTAACGATTAA
CAGGGGCGAATCAAATCGCGTAACCGGAGTTCACCAACAAGGAAGCGATA
CACATTTCATTTTAAAAGATGGGACTCTTTCCGACCCATTTGACCTTGTC
ATAGGGGCTGACGGAGTCCGATCAAACGTACGAAGCCACGTTAGTAAGCA
ACCCACAGAGCCGATCTATAGTGGTATCCGTATTCAATGGGCAATAGCCA
ACGGTTCTATGCTCCCACAAGGTCACTTAGAGCAATGGTTTGGCGACGGT
GTGTACGTATTGCGCTATTCAGCGGGTTCACAGGACAAACCATATGAGAT
TATAGCAAGCTCTTTTAGAAAACGAGAGAGCGCGCTTGAGAACGAAGGCT
ACGAGCAGGACAAATTTGTCAGAAAAGACTTTCGTGAAAGGCTTCACAGG
TCATCTATGCCTACGTCTGTCACTGATGTTCTAGAGCGTAGTGAACGTCT
AATTGAGACTTCTGTTTATCGTCAAAATCTTCCCTCTATATGGCATCGCG
GCTCTTGCTGCCTCGTGGGCGACTCAGCACATGCTATGCCACCATATCTA
GGTCAAGGTGCCAATCAAGCAGTACAGGATGCACACTGCTTGGCGCTTGC
GTTATCAAAAATCGATATGCAGCACGGAACTCTTTCAGATGCTTTGGAGA
GCTACGAGCGCATAAGGCGTGTGCCAGTCCAAGCCGTCTTGCAGACCAGT
CGCCTTGTCTCCTTTTTTGAAATCCAAGACGGCAAGATACAATCACAAGC
GCGAAACAACTTCTTTCGGATTCTTGGCATTGCAGGAGTTCCAGGGAGGA
CTTTGATACAAGCTGCCATTCCTCGTATTTCATAA
back to top

protein sequence of Gchil2388.t1

>Gchil2388.t1 ID=Gchil2388.t1|Name=Gchil2388.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=445bp
MAFAQLAHLPTKVPCVKTDSCQARPSWTASAKPRRVGIAGAGIAGLSTAL
ALIRTPGTGVEQVDIFEPRLDVDSGKGGALNLNGASAILGSVYGVPIQDI
GSSLDRVIAREVAGSTLFEVDVGRVLKSSKAATKALSMNGRHSFMAVMRE
DMLSLLAKEIEHQVTINRGESNRVTGVHQQGSDTHFILKDGTLSDPFDLV
IGADGVRSNVRSHVSKQPTEPIYSGIRIQWAIANGSMLPQGHLEQWFGDG
VYVLRYSAGSQDKPYEIIASSFRKRESALENEGYEQDKFVRKDFRERLHR
SSMPTSVTDVLERSERLIETSVYRQNLPSIWHRGSCCLVGDSAHAMPPYL
GQGANQAVQDAHCLALALSKIDMQHGTLSDALESYERIRRVPVQAVLQTS
RLVSFFEIQDGKIQSQARNNFFRILGIAGVPGRTLIQAAIPRIS*
back to top

mRNA from alignment at tig00004400_pilon:309784..311231+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2388.t1 ID=Gchil2388.t1|Name=Gchil2388.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1448bp|location=Sequence derived from alignment at tig00004400_pilon:309784..311231+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATTTGCTCAACTTGCTCACTTGCCCACAAAAGTTCCGTGCGTTAA
AACTGATTCTTGTCAGGCAAGGCCTTCATGGACGGCGTCTGCAAAGCCTC
GTCGCGTAGGAATTGCAGGAGCAGGGATTGCAGGTCTCTCCACTGCTCTA
GCCCTCATACGCACACCTGGAACAGGAGTTGAACAAGTGGATATATTTGA
GCCACGTTTGGATGTGGATTCCGGTAAAGGAGGAGCGTTGAATCTCAATG
GAGCGTCAGCTATTCTCGGGAGTGTGTACGGTGTTCCCATCCAGGACATT
GGCTCATCTCTTGATAGAGTGATAGCTAGAGAAGTGGCCGGTAGCACTCT
CTTTGAGGTCGATGTTGGTCGTGTTCTGAAATCCTCCAAAGCAGCGACCA
AAGCTCTTTCAATGAACGGGCGTCATTCGTTCATGGCAGTGATGAGAGAA
GACATGCTGTCATTGCTTGCCAAAGAAATAGAACACCAAGTAACGATTAA
CAGGGGCGAATCAAATCGCGTAACCGGAGTTCACCAACAAGGAAGCGATA
CACATTTCATTTTAAAAGATGGGACTCTTTCCGACCCATTTGACCTTGTC
ATAGGGGCTGACGGAGTCCGATCAAACGTACGAAGCCACGTTAGTAAGCA
ACCCACAGAGCCGATCTATAGTGGTATCCGTATTCAATGGGCAATAGCCA
ACGGTTCTATGCTCCCACAAGGTCACTTAGAGCAATGGTTTGGCGACGGT
GTGTACGTATTGCGCTATTCAGCGGGTTCACAGGACAAACCATATGAGAT
TATAGCAAGCTCTTTTAGAAAACGAGAGAGCGCGCTTGAGAACGAAGGCT
ACGAGCAGGACAAATTTGTCAGAAAAGACTTTCGTGAAAGGCTTCACAGG
TCATCTATGCCTACGTCTGTCACTGATGTTCTAGAGCGTAGTGAACGTCT
AATTGAGACTTCTGTTTATCGTCAAAATCTTCCCTCTATATGGCATCGCG
GCTCTTGCTGCCTCGTGGGCGACTCAGGTAAGATAAAATGCACACATCTA
AGGGCTGATGCAAAACAAACGCTTATTGAAATAGTTAGCTAACATCTAAT
ACTCCAACCGTCCCCTTCTATTCCAATTCTTATTCGGTAGCACATGCTAT
GCCACCATATCTAGGTCAAGGTGCCAATCAAGCAGTACAGGATGCACACT
GCTTGGCGCTTGCGTTATCAAAAATCGATATGCAGCACGGAACTCTTTCA
GATGCTTTGGAGAGCTACGAGCGCATAAGGCGTGTGCCAGTCCAAGCCGT
CTTGCAGACCAGTCGCCTTGTCTCCTTTTTTGAAATCCAAGACGGCAAGA
TACAATCACAAGCGCGAAACAACTTCTTTCGGATTCTTGGCATTGCAGGA
GTTCCAGGGAGGACTTTGATACAAGCTGCCATTCCTCGTATTTCATAA
back to top

Coding sequence (CDS) from alignment at tig00004400_pilon:309784..311231+

>Gchil2388.t1 ID=Gchil2388.t1|Name=Gchil2388.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00004400_pilon:309784..311231+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATTTGCTCAACTTGCTCACTTGCCCACAAAAGTTCCGTGCGTTAA
AACTGATTCTTGTCAGGCAAGGCCTTCATGGACGGCGTCTGCAAAGCCTC
GTCGCGTAGGAATTGCAGGAGCAGGGATTGCAGGTCTCTCCACTGCTCTA
GCCCTCATACGCACACCTGGAACAGGAGTTGAACAAGTGGATATATTTGA
GCCACGTTTGGATGTGGATTCCGGTAAAGGAGGAGCGTTGAATCTCAATG
GAGCGTCAGCTATTCTCGGGAGTGTGTACGGTGTTCCCATCCAGGACATT
GGCTCATCTCTTGATAGAGTGATAGCTAGAGAAGTGGCCGGTAGCACTCT
CTTTGAGGTCGATGTTGGTCGTGTTCTGAAATCCTCCAAAGCAGCGACCA
AAGCTCTTTCAATGAACGGGCGTCATTCGTTCATGGCAGTGATGAGAGAA
GACATGCTGTCATTGCTTGCCAAAGAAATAGAACACCAAGTAACGATTAA
CAGGGGCGAATCAAATCGCGTAACCGGAGTTCACCAACAAGGAAGCGATA
CACATTTCATTTTAAAAGATGGGACTCTTTCCGACCCATTTGACCTTGTC
ATAGGGGCTGACGGAGTCCGATCAAACGTACGAAGCCACGTTAGTAAGCA
ACCCACAGAGCCGATCTATAGTGGTATCCGTATTCAATGGGCAATAGCCA
ACGGTTCTATGCTCCCACAAGGTCACTTAGAGCAATGGTTTGGCGACGGT
GTGTACGTATTGCGCTATTCAGCGGGTTCACAGGACAAACCATATGAGAT
TATAGCAAGCTCTTTTAGAAAACGAGAGAGCGCGCTTGAGAACGAAGGCT
ACGAGCAGGACAAATTTGTCAGAAAAGACTTTCGTGAAAGGCTTCACAGG
TCATCTATGCCTACGTCTGTCACTGATGTTCTAGAGCGTAGTGAACGTCT
AATTGAGACTTCTGTTTATCGTCAAAATCTTCCCTCTATATGGCATCGCG
GCTCTTGCTGCCTCGTGGGCGACTCAGCACATGCTATGCCACCATATCTA
GGTCAAGGTGCCAATCAAGCAGTACAGGATGCACACTGCTTGGCGCTTGC
GTTATCAAAAATCGATATGCAGCACGGAACTCTTTCAGATGCTTTGGAGA
GCTACGAGCGCATAAGGCGTGTGCCAGTCCAAGCCGTCTTGCAGACCAGT
CGCCTTGTCTCCTTTTTTGAAATCCAAGACGGCAAGATACAATCACAAGC
GCGAAACAACTTCTTTCGGATTCTTGGCATTGCAGGAGTTCCAGGGAGGA
CTTTGATACAAGCTGCCATTCCTCGTATTTCATAA
back to top