Gchil2381.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2381.t1
Unique NameGchil2381.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:300739..301276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2381Gchil2381Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 300739..301276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2381.t1Gchil2381.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 300739..301276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2381.t1.start1Gchil2381.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 300739..300741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2381.t1.CDS1Gchil2381.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 300739..300860 +
Gchil2381.t1.CDS2Gchil2381.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 300979..301276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2381.t1.exon1Gchil2381.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 300739..300860 +
Gchil2381.t1.exon2Gchil2381.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 300979..301276 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2381.t1.intron1Gchil2381.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 300861..300978 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2381.t1.stop1Gchil2381.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 301274..301276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2381.t1 ID=Gchil2381.t1|Name=Gchil2381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=140bp
MISVRKISGINNNTSYFHKAKARFRENRTFAVQPRIDRLRAVWQNESSET
APFSGRRHRNELRHNDYRDSLYRTNTAFPLNVHFSVLNPYSTSCVKKHAC
STVSKGSTFAPHDRARGCSQCYRGIWRGNCSWWNRRIPS*
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spliced messenger RNA

>Gchil2381.t1 ID=Gchil2381.t1|Name=Gchil2381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00004400_pilon:300739..301276+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCGGTTCGTAAGATCTCGGGTATTAACAATAACACAAGCTACTT
TCATAAAGCAAAGGCTCGATTCCGGGAAAACCGCACTTTTGCCGTTCAAC
CTCGCATTGACCGTCTTCGAGCAGTCTGGCAGAACGAATCTAGTGAAACG
GCTCCCTTCAGTGGGCGCAGACATAGAAACGAATTGCGGCATAATGACTA
CCGTGACAGCCTTTATAGGACCAATACCGCTTTCCCGCTCAACGTTCACT
TCTCGGTCCTCAACCCGTACTCCACTTCTTGCGTCAAGAAGCATGCGTGT
AGCACAGTTTCGAAGGGCTCAACTTTTGCCCCGCATGATCGCGCCAGAGG
TTGCTCGCAATGCTATCGCGGTATATGGCGTGGTAATTGCAGCTGGTGGA
ATCGGCGCATTCCTTCGTAG
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protein sequence of Gchil2381.t1

>Gchil2381.t1 ID=Gchil2381.t1|Name=Gchil2381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=140bp
MISVRKISGINNNTSYFHKAKARFRENRTFAVQPRIDRLRAVWQNESSET
APFSGRRHRNELRHNDYRDSLYRTNTAFPLNVHFSVLNPYSTSCVKKHAC
STVSKGSTFAPHDRARGCSQCYRGIWRGNCSWWNRRIPS*
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mRNA from alignment at tig00004400_pilon:300739..301276+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2381.t1 ID=Gchil2381.t1|Name=Gchil2381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp|location=Sequence derived from alignment at tig00004400_pilon:300739..301276+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTCGGTTCGTAAGATCTCGGGTATTAACAATAACACAAGCTACTT
TCATAAAGCAAAGGCTCGATTCCGGGAAAACCGCACTTTTGCCGTTCAAC
CTCGCATTGACCGTCTTCGAGCGTAAGTTGCCCGCTTTTCGGAACATGTT
TGAATTGCCTGCAATAAAGAAAAAAGGACGAATCACACATGGATATCATT
GCTAACGCAACCGTTGTTTCGATGTTTCTCTCTCTCATAGAGTCTGGCAG
AACGAATCTAGTGAAACGGCTCCCTTCAGTGGGCGCAGACATAGAAACGA
ATTGCGGCATAATGACTACCGTGACAGCCTTTATAGGACCAATACCGCTT
TCCCGCTCAACGTTCACTTCTCGGTCCTCAACCCGTACTCCACTTCTTGC
GTCAAGAAGCATGCGTGTAGCACAGTTTCGAAGGGCTCAACTTTTGCCCC
GCATGATCGCGCCAGAGGTTGCTCGCAATGCTATCGCGGTATATGGCGTG
GTAATTGCAGCTGGTGGAATCGGCGCATTCCTTCGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:300739..301276+

>Gchil2381.t1 ID=Gchil2381.t1|Name=Gchil2381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=420bp|location=Sequence derived from alignment at tig00004400_pilon:300739..301276+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTCGGTTCGTAAGATCTCGGGTATTAACAATAACACAAGCTACTT
TCATAAAGCAAAGGCTCGATTCCGGGAAAACCGCACTTTTGCCGTTCAAC
CTCGCATTGACCGTCTTCGAGCAGTCTGGCAGAACGAATCTAGTGAAACG
GCTCCCTTCAGTGGGCGCAGACATAGAAACGAATTGCGGCATAATGACTA
CCGTGACAGCCTTTATAGGACCAATACCGCTTTCCCGCTCAACGTTCACT
TCTCGGTCCTCAACCCGTACTCCACTTCTTGCGTCAAGAAGCATGCGTGT
AGCACAGTTTCGAAGGGCTCAACTTTTGCCCCGCATGATCGCGCCAGAGG
TTGCTCGCAATGCTATCGCGGTATATGGCGTGGTAATTGCAGCTGGTGGA
ATCGGCGCATTCCTTCGTAG
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