Gchil2380.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2380.t1
Unique NameGchil2380.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:293448..294236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000022965
Max annot lvl121069|Pythiales
Evalue3.42e-05
EggNOG OGs29NZY@1|root,2RWB6@2759|Eukaryota,1MJPB@121069|Pythiales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2380Gchil2380Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 293448..294236 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2380.t1.stop1Gchil2380.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 293448..293450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2380.t1.CDS1Gchil2380.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 293448..294236 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2380.t1.exon1Gchil2380.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 293448..294236 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2380.t1.start1Gchil2380.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 294234..294236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2380.t1Gchil2380.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 293448..294236 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2380.t1 ID=Gchil2380.t1|Name=Gchil2380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=263bp
MSFFKKRFTVFGRKTVFAKDEAIVKVIMKEFTIPDSNARCDGDSVSDAED
VGPPLGDRRVDVLVLQYEVAENRARIGSCCTVVIFNPVKFDYAVSLLSDG
LSFRRISKVVKDNRDRVGAAGVIGCVCDGDASNFAPITCAFRLQILDDMM
WYNWAYSLATAVSTNDFGNSHLDVRIRILGIGVADNQRSFHLLEIPLSRR
HTAPSHSLLYSLRFLMRFFRRGRRRLSDRLETAPRIRLGTTLDFPHGLPS
FSLAESSMAFGA*
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spliced messenger RNA

>Gchil2380.t1 ID=Gchil2380.t1|Name=Gchil2380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004400_pilon:293448..294236- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTTTTCAAGAAGCGCTTTACGGTTTTTGGGCGCAAGACCGTCTT
CGCGAAAGACGAGGCCATCGTCAAAGTGATTATGAAAGAGTTCACGATTC
CAGACTCGAACGCGCGGTGTGACGGTGACTCAGTGTCGGACGCTGAAGAC
GTCGGGCCTCCACTCGGAGACCGTAGGGTCGATGTATTAGTGCTGCAGTA
CGAAGTCGCCGAGAACAGAGCCAGGATCGGGTCATGCTGTACTGTCGTGA
TTTTTAATCCCGTGAAGTTCGACTACGCCGTATCGCTTCTCAGTGACGGT
CTATCATTTCGCCGAATATCAAAAGTTGTTAAAGATAACCGAGACCGAGT
TGGCGCCGCTGGCGTAATTGGTTGTGTTTGTGACGGAGACGCTTCAAACT
TTGCGCCCATCACCTGTGCATTCCGCCTTCAGATCCTCGATGACATGATG
TGGTACAACTGGGCGTACTCCCTGGCGACCGCTGTGTCGACGAACGACTT
CGGAAATTCTCATCTTGACGTCCGCATTCGCATACTCGGTATCGGCGTAG
CCGACAATCAGCGGTCGTTTCATCTTTTGGAAATTCCTCTTTCGAGGCGT
CACACAGCGCCATCTCACTCTTTACTATATTCTCTAAGGTTTTTGATGCG
CTTTTTCCGGCGTGGAAGGAGAAGGTTATCGGATCGTCTGGAGACGGCGC
CTCGAATACGACTGGGTACAACATTGGACTTTCCACACGGCTTGCCAAGT
TTTTCATTGGCGGAAAGCTCTATGGCGTTTGGTGCCTAG
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protein sequence of Gchil2380.t1

>Gchil2380.t1 ID=Gchil2380.t1|Name=Gchil2380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=263bp
MSFFKKRFTVFGRKTVFAKDEAIVKVIMKEFTIPDSNARCDGDSVSDAED
VGPPLGDRRVDVLVLQYEVAENRARIGSCCTVVIFNPVKFDYAVSLLSDG
LSFRRISKVVKDNRDRVGAAGVIGCVCDGDASNFAPITCAFRLQILDDMM
WYNWAYSLATAVSTNDFGNSHLDVRIRILGIGVADNQRSFHLLEIPLSRR
HTAPSHSLLYSLRFLMRFFRRGRRRLSDRLETAPRIRLGTTLDFPHGLPS
FSLAESSMAFGA*
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mRNA from alignment at tig00004400_pilon:293448..294236-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2380.t1 ID=Gchil2380.t1|Name=Gchil2380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004400_pilon:293448..294236- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTTTCAAGAAGCGCTTTACGGTTTTTGGGCGCAAGACCGTCTT
CGCGAAAGACGAGGCCATCGTCAAAGTGATTATGAAAGAGTTCACGATTC
CAGACTCGAACGCGCGGTGTGACGGTGACTCAGTGTCGGACGCTGAAGAC
GTCGGGCCTCCACTCGGAGACCGTAGGGTCGATGTATTAGTGCTGCAGTA
CGAAGTCGCCGAGAACAGAGCCAGGATCGGGTCATGCTGTACTGTCGTGA
TTTTTAATCCCGTGAAGTTCGACTACGCCGTATCGCTTCTCAGTGACGGT
CTATCATTTCGCCGAATATCAAAAGTTGTTAAAGATAACCGAGACCGAGT
TGGCGCCGCTGGCGTAATTGGTTGTGTTTGTGACGGAGACGCTTCAAACT
TTGCGCCCATCACCTGTGCATTCCGCCTTCAGATCCTCGATGACATGATG
TGGTACAACTGGGCGTACTCCCTGGCGACCGCTGTGTCGACGAACGACTT
CGGAAATTCTCATCTTGACGTCCGCATTCGCATACTCGGTATCGGCGTAG
CCGACAATCAGCGGTCGTTTCATCTTTTGGAAATTCCTCTTTCGAGGCGT
CACACAGCGCCATCTCACTCTTTACTATATTCTCTAAGGTTTTTGATGCG
CTTTTTCCGGCGTGGAAGGAGAAGGTTATCGGATCGTCTGGAGACGGCGC
CTCGAATACGACTGGGTACAACATTGGACTTTCCACACGGCTTGCCAAGT
TTTTCATTGGCGGAAAGCTCTATGGCGTTTGGTGCCTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:293448..294236-

>Gchil2380.t1 ID=Gchil2380.t1|Name=Gchil2380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00004400_pilon:293448..294236- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTTTCAAGAAGCGCTTTACGGTTTTTGGGCGCAAGACCGTCTT
CGCGAAAGACGAGGCCATCGTCAAAGTGATTATGAAAGAGTTCACGATTC
CAGACTCGAACGCGCGGTGTGACGGTGACTCAGTGTCGGACGCTGAAGAC
GTCGGGCCTCCACTCGGAGACCGTAGGGTCGATGTATTAGTGCTGCAGTA
CGAAGTCGCCGAGAACAGAGCCAGGATCGGGTCATGCTGTACTGTCGTGA
TTTTTAATCCCGTGAAGTTCGACTACGCCGTATCGCTTCTCAGTGACGGT
CTATCATTTCGCCGAATATCAAAAGTTGTTAAAGATAACCGAGACCGAGT
TGGCGCCGCTGGCGTAATTGGTTGTGTTTGTGACGGAGACGCTTCAAACT
TTGCGCCCATCACCTGTGCATTCCGCCTTCAGATCCTCGATGACATGATG
TGGTACAACTGGGCGTACTCCCTGGCGACCGCTGTGTCGACGAACGACTT
CGGAAATTCTCATCTTGACGTCCGCATTCGCATACTCGGTATCGGCGTAG
CCGACAATCAGCGGTCGTTTCATCTTTTGGAAATTCCTCTTTCGAGGCGT
CACACAGCGCCATCTCACTCTTTACTATATTCTCTAAGGTTTTTGATGCG
CTTTTTCCGGCGTGGAAGGAGAAGGTTATCGGATCGTCTGGAGACGGCGC
CTCGAATACGACTGGGTACAACATTGGACTTTCCACACGGCTTGCCAAGT
TTTTCATTGGCGGAAAGCTCTATGGCGTTTGGTGCCTAG
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