Gchil2379.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2379.t1
Unique NameGchil2379.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:292342..292737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI50995
Max annot lvl2759|Eukaryota
Evalue4.83e-06
EggNOG OGs2D37E@1|root,2SQGC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2379Gchil2379Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 292342..292737 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2379.t1.stop1Gchil2379.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 292342..292344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2379.t1.CDS1Gchil2379.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 292342..292737 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2379.t1.exon1Gchil2379.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 292342..292737 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2379.t1.start1Gchil2379.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 292735..292737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2379.t1Gchil2379.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 292342..292737 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2379.t1 ID=Gchil2379.t1|Name=Gchil2379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=132bp
MSLVDPVSLAAYHKVRLLSAFDDKFLKTICRQHKDLVRIASQNVPLLSQL
SRFLPNRQVISKSWTPFGSRLQKLMLFSAGFATAIPTKSRVESDFSLLFY
RRNSYCSWLIDFALERFIYPKQFFHLQQAAK*
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spliced messenger RNA

>Gchil2379.t1 ID=Gchil2379.t1|Name=Gchil2379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004400_pilon:292342..292737- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTAGTTGACCCCGTATCACTGGCAGCCTATCACAAGGTTCGGCT
GCTTTCAGCGTTTGATGACAAGTTTCTGAAGACCATTTGCCGGCAGCACA
AAGATCTTGTCCGCATTGCTTCCCAGAATGTACCTTTACTGTCACAGTTG
AGCCGTTTTCTACCGAATAGACAAGTGATTTCGAAGTCTTGGACTCCTTT
TGGGTCTCGTCTCCAAAAGCTTATGCTGTTCTCAGCGGGGTTTGCGACAG
CCATCCCAACTAAGAGCCGCGTGGAGTCTGACTTCTCGTTGTTGTTCTAC
CGCCGCAACTCCTACTGCTCGTGGTTGATTGACTTTGCGCTTGAGAGATT
CATATACCCGAAGCAATTCTTCCACCTTCAGCAGGCGGCAAAGTAG
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protein sequence of Gchil2379.t1

>Gchil2379.t1 ID=Gchil2379.t1|Name=Gchil2379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=132bp
MSLVDPVSLAAYHKVRLLSAFDDKFLKTICRQHKDLVRIASQNVPLLSQL
SRFLPNRQVISKSWTPFGSRLQKLMLFSAGFATAIPTKSRVESDFSLLFY
RRNSYCSWLIDFALERFIYPKQFFHLQQAAK*
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mRNA from alignment at tig00004400_pilon:292342..292737-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2379.t1 ID=Gchil2379.t1|Name=Gchil2379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004400_pilon:292342..292737- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCTAGTTGACCCCGTATCACTGGCAGCCTATCACAAGGTTCGGCT
GCTTTCAGCGTTTGATGACAAGTTTCTGAAGACCATTTGCCGGCAGCACA
AAGATCTTGTCCGCATTGCTTCCCAGAATGTACCTTTACTGTCACAGTTG
AGCCGTTTTCTACCGAATAGACAAGTGATTTCGAAGTCTTGGACTCCTTT
TGGGTCTCGTCTCCAAAAGCTTATGCTGTTCTCAGCGGGGTTTGCGACAG
CCATCCCAACTAAGAGCCGCGTGGAGTCTGACTTCTCGTTGTTGTTCTAC
CGCCGCAACTCCTACTGCTCGTGGTTGATTGACTTTGCGCTTGAGAGATT
CATATACCCGAAGCAATTCTTCCACCTTCAGCAGGCGGCAAAGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:292342..292737-

>Gchil2379.t1 ID=Gchil2379.t1|Name=Gchil2379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=396bp|location=Sequence derived from alignment at tig00004400_pilon:292342..292737- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCTAGTTGACCCCGTATCACTGGCAGCCTATCACAAGGTTCGGCT
GCTTTCAGCGTTTGATGACAAGTTTCTGAAGACCATTTGCCGGCAGCACA
AAGATCTTGTCCGCATTGCTTCCCAGAATGTACCTTTACTGTCACAGTTG
AGCCGTTTTCTACCGAATAGACAAGTGATTTCGAAGTCTTGGACTCCTTT
TGGGTCTCGTCTCCAAAAGCTTATGCTGTTCTCAGCGGGGTTTGCGACAG
CCATCCCAACTAAGAGCCGCGTGGAGTCTGACTTCTCGTTGTTGTTCTAC
CGCCGCAACTCCTACTGCTCGTGGTTGATTGACTTTGCGCTTGAGAGATT
CATATACCCGAAGCAATTCTTCCACCTTCAGCAGGCGGCAAAGTAG
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