Gchil2366.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2366.t1
Unique NameGchil2366.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:169936..171168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704518.1
Preferred nameDHH1
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K12614
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000288,GO:0000290,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006448,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010558,GO:0010603,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016032,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033043,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045182,GO:0045900,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0098552,GO:0098562,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902115,GO:1990904,GO:2000112,GO:2000113
Evalue7.38e-233
EggNOG OGsCOG0513@1|root,KOG0326@2759|Eukaryota
EC3.6.4.13
Descriptioncytoplasmic mRNA processing body assembly
COG categoryJKL
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2366Gchil2366Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 169936..171168 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2366.t1.stop1Gchil2366.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 169936..169938 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2366.t1.CDS1Gchil2366.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 169936..171168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2366.t1.exon1Gchil2366.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 169936..171168 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2366.t1.start1Gchil2366.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 171166..171168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2366.t1Gchil2366.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 169936..171168 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2366.t1 ID=Gchil2366.t1|Name=Gchil2366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp
MAAAPAPDDWRSLVKPPPKDTRFRTTDVTATKGNDFEDYYLKRELLMGIY
EMGFEQPSPIQEAAIPVSLAGRDILARAKNGTGKTGAYLIPILERVDLNQ
TVASALILVPTRELALQTAQVCKKLARHIDALQVMVSTGGTSLKDDIMRF
YQPVHVLVATPGRVLDMARKNVCKLNRCSMLVMDEADKLLAPEFSHVIHQ
IIANFMPSDRQISLFSATFPVAVKGFRDRFLKKPYEINLMDELTLQGITQ
FYAFVEESNKVHCLNTLFSKLQINQSIIFCNSVNRVELLARKITDLGYSC
FYIHARMPQEQRNRVFHDFRSGACRNLVSSDLFTRGIDIQAVNVVINFDF
PKSSETYLHRVGRSGRFGHRGLAISLITYDDRFNLYRIEQELDTEISPIP
PLVDKALYCE*
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spliced messenger RNA

>Gchil2366.t1 ID=Gchil2366.t1|Name=Gchil2366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00004400_pilon:169936..171168- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGCGCCCGCGCCCGACGATTGGCGCTCGCTCGTCAAGCCGCC
CCCCAAGGACACGCGCTTCCGCACCACAGACGTGACCGCCACCAAGGGAA
ATGACTTTGAGGACTACTACCTCAAGCGCGAGCTACTCATGGGAATCTAC
GAAATGGGCTTTGAGCAGCCGTCGCCCATCCAGGAGGCCGCCATTCCCGT
CTCACTCGCCGGTCGCGACATTCTCGCCCGCGCCAAAAACGGTACCGGAA
AAACCGGCGCCTATCTCATCCCTATCCTCGAGCGCGTCGACCTCAACCAG
ACCGTCGCCTCCGCCCTCATCCTCGTTCCAACCCGCGAGCTCGCCCTGCA
GACCGCCCAGGTGTGCAAGAAACTTGCGCGTCACATCGACGCTTTGCAGG
TCATGGTGTCAACGGGCGGCACTAGTCTCAAGGACGATATCATGAGGTTT
TATCAACCTGTGCATGTGCTCGTTGCCACCCCGGGTCGCGTCCTCGACAT
GGCTAGAAAAAACGTGTGCAAGCTCAACCGTTGTTCCATGCTCGTCATGG
ACGAGGCAGACAAGCTGCTGGCCCCCGAGTTTTCGCACGTCATTCACCAG
ATCATCGCCAACTTCATGCCGTCTGACCGTCAGATCTCCCTCTTTTCCGC
CACCTTCCCCGTCGCCGTCAAGGGCTTTCGCGACCGCTTCCTGAAAAAGC
CTTATGAGATCAACCTCATGGACGAGCTCACCTTGCAGGGTATCACCCAG
TTTTACGCCTTTGTTGAGGAGAGCAACAAGGTCCACTGTCTCAACACCCT
CTTCTCAAAGCTTCAGATCAATCAGAGCATCATCTTTTGCAACTCGGTCA
ACCGCGTCGAACTGCTCGCCAGAAAGATCACCGATCTGGGCTATTCGTGC
TTTTACATCCATGCGCGCATGCCCCAGGAGCAACGAAATCGCGTCTTTCA
TGACTTTCGATCGGGCGCCTGTCGTAACCTCGTCTCCTCCGATCTCTTCA
CAAGAGGCATTGACATTCAGGCCGTCAACGTTGTCATTAACTTTGACTTT
CCAAAGTCCTCCGAGACTTATCTTCATCGCGTTGGTCGCTCCGGTCGCTT
TGGCCATCGCGGCTTGGCTATCAGTCTCATCACTTATGACGATCGTTTCA
ATCTCTACAGAATTGAACAGGAACTGGACACCGAGATTTCTCCCATCCCT
CCGCTCGTTGACAAGGCCTTGTATTGCGAGTGA
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protein sequence of Gchil2366.t1

>Gchil2366.t1 ID=Gchil2366.t1|Name=Gchil2366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=411bp
MAAAPAPDDWRSLVKPPPKDTRFRTTDVTATKGNDFEDYYLKRELLMGIY
EMGFEQPSPIQEAAIPVSLAGRDILARAKNGTGKTGAYLIPILERVDLNQ
TVASALILVPTRELALQTAQVCKKLARHIDALQVMVSTGGTSLKDDIMRF
YQPVHVLVATPGRVLDMARKNVCKLNRCSMLVMDEADKLLAPEFSHVIHQ
IIANFMPSDRQISLFSATFPVAVKGFRDRFLKKPYEINLMDELTLQGITQ
FYAFVEESNKVHCLNTLFSKLQINQSIIFCNSVNRVELLARKITDLGYSC
FYIHARMPQEQRNRVFHDFRSGACRNLVSSDLFTRGIDIQAVNVVINFDF
PKSSETYLHRVGRSGRFGHRGLAISLITYDDRFNLYRIEQELDTEISPIP
PLVDKALYCE*
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mRNA from alignment at tig00004400_pilon:169936..171168-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2366.t1 ID=Gchil2366.t1|Name=Gchil2366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00004400_pilon:169936..171168- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGCGCCCGCGCCCGACGATTGGCGCTCGCTCGTCAAGCCGCC
CCCCAAGGACACGCGCTTCCGCACCACAGACGTGACCGCCACCAAGGGAA
ATGACTTTGAGGACTACTACCTCAAGCGCGAGCTACTCATGGGAATCTAC
GAAATGGGCTTTGAGCAGCCGTCGCCCATCCAGGAGGCCGCCATTCCCGT
CTCACTCGCCGGTCGCGACATTCTCGCCCGCGCCAAAAACGGTACCGGAA
AAACCGGCGCCTATCTCATCCCTATCCTCGAGCGCGTCGACCTCAACCAG
ACCGTCGCCTCCGCCCTCATCCTCGTTCCAACCCGCGAGCTCGCCCTGCA
GACCGCCCAGGTGTGCAAGAAACTTGCGCGTCACATCGACGCTTTGCAGG
TCATGGTGTCAACGGGCGGCACTAGTCTCAAGGACGATATCATGAGGTTT
TATCAACCTGTGCATGTGCTCGTTGCCACCCCGGGTCGCGTCCTCGACAT
GGCTAGAAAAAACGTGTGCAAGCTCAACCGTTGTTCCATGCTCGTCATGG
ACGAGGCAGACAAGCTGCTGGCCCCCGAGTTTTCGCACGTCATTCACCAG
ATCATCGCCAACTTCATGCCGTCTGACCGTCAGATCTCCCTCTTTTCCGC
CACCTTCCCCGTCGCCGTCAAGGGCTTTCGCGACCGCTTCCTGAAAAAGC
CTTATGAGATCAACCTCATGGACGAGCTCACCTTGCAGGGTATCACCCAG
TTTTACGCCTTTGTTGAGGAGAGCAACAAGGTCCACTGTCTCAACACCCT
CTTCTCAAAGCTTCAGATCAATCAGAGCATCATCTTTTGCAACTCGGTCA
ACCGCGTCGAACTGCTCGCCAGAAAGATCACCGATCTGGGCTATTCGTGC
TTTTACATCCATGCGCGCATGCCCCAGGAGCAACGAAATCGCGTCTTTCA
TGACTTTCGATCGGGCGCCTGTCGTAACCTCGTCTCCTCCGATCTCTTCA
CAAGAGGCATTGACATTCAGGCCGTCAACGTTGTCATTAACTTTGACTTT
CCAAAGTCCTCCGAGACTTATCTTCATCGCGTTGGTCGCTCCGGTCGCTT
TGGCCATCGCGGCTTGGCTATCAGTCTCATCACTTATGACGATCGTTTCA
ATCTCTACAGAATTGAACAGGAACTGGACACCGAGATTTCTCCCATCCCT
CCGCTCGTTGACAAGGCCTTGTATTGCGAGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:169936..171168-

>Gchil2366.t1 ID=Gchil2366.t1|Name=Gchil2366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1233bp|location=Sequence derived from alignment at tig00004400_pilon:169936..171168- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGCGCCCGCGCCCGACGATTGGCGCTCGCTCGTCAAGCCGCC
CCCCAAGGACACGCGCTTCCGCACCACAGACGTGACCGCCACCAAGGGAA
ATGACTTTGAGGACTACTACCTCAAGCGCGAGCTACTCATGGGAATCTAC
GAAATGGGCTTTGAGCAGCCGTCGCCCATCCAGGAGGCCGCCATTCCCGT
CTCACTCGCCGGTCGCGACATTCTCGCCCGCGCCAAAAACGGTACCGGAA
AAACCGGCGCCTATCTCATCCCTATCCTCGAGCGCGTCGACCTCAACCAG
ACCGTCGCCTCCGCCCTCATCCTCGTTCCAACCCGCGAGCTCGCCCTGCA
GACCGCCCAGGTGTGCAAGAAACTTGCGCGTCACATCGACGCTTTGCAGG
TCATGGTGTCAACGGGCGGCACTAGTCTCAAGGACGATATCATGAGGTTT
TATCAACCTGTGCATGTGCTCGTTGCCACCCCGGGTCGCGTCCTCGACAT
GGCTAGAAAAAACGTGTGCAAGCTCAACCGTTGTTCCATGCTCGTCATGG
ACGAGGCAGACAAGCTGCTGGCCCCCGAGTTTTCGCACGTCATTCACCAG
ATCATCGCCAACTTCATGCCGTCTGACCGTCAGATCTCCCTCTTTTCCGC
CACCTTCCCCGTCGCCGTCAAGGGCTTTCGCGACCGCTTCCTGAAAAAGC
CTTATGAGATCAACCTCATGGACGAGCTCACCTTGCAGGGTATCACCCAG
TTTTACGCCTTTGTTGAGGAGAGCAACAAGGTCCACTGTCTCAACACCCT
CTTCTCAAAGCTTCAGATCAATCAGAGCATCATCTTTTGCAACTCGGTCA
ACCGCGTCGAACTGCTCGCCAGAAAGATCACCGATCTGGGCTATTCGTGC
TTTTACATCCATGCGCGCATGCCCCAGGAGCAACGAAATCGCGTCTTTCA
TGACTTTCGATCGGGCGCCTGTCGTAACCTCGTCTCCTCCGATCTCTTCA
CAAGAGGCATTGACATTCAGGCCGTCAACGTTGTCATTAACTTTGACTTT
CCAAAGTCCTCCGAGACTTATCTTCATCGCGTTGGTCGCTCCGGTCGCTT
TGGCCATCGCGGCTTGGCTATCAGTCTCATCACTTATGACGATCGTTTCA
ATCTCTACAGAATTGAACAGGAACTGGACACCGAGATTTCTCCCATCCCT
CCGCTCGTTGACAAGGCCTTGTATTGCGAGTGA
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