Gchil2362.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2362.t1
Unique Name	Gchil2362.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:159632..160780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_13156T0
PFAMs	ADH_N,ADH_zinc_N
Max annot lvl	33154\|Opisthokonta
Evalue	8.74e-84
EggNOG OGs	COG1064@1\|root,KOG0023@2759\|Eukaryota,38EJ7@33154\|Opisthokonta
Description	alcohol dehydrogenase (NADP ) activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2362	Gchil2362	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 159632..160780 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2362.t1.start1	Gchil2362.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 159632..159634 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2362.t1.CDS1	Gchil2362.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 159632..160780 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2362.t1.exon1	Gchil2362.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 159632..160780 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2362.t1.stop1	Gchil2362.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 160778..160780 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2362.t1	Gchil2362.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 159632..160780 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:159632..160780+
coding sequence from alignment at tig00004400_pilon:159632..160780+

mRNA sequence

>Gchil2362.t1 ID=Gchil2362.t1|Name=Gchil2362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=383bp
MGPSPIETAQAVQDVNQTQKPLLTEGYVVNERGAKLTLQPVTLPPMAPTM
VQVKILMSGLCHTDIHMRDNDTASSDYPLVLGHEGIGRVTHVGRSVRHLK
VGDTVAISWIRDSCGTCPACCCGRENICEQGYQGLFLSSAAGIWGASPKQ
YNLHGGCFVRYQRIEEHFAIKISNGLPPDIACPLVCGGGTVFEPLCDYAT
PGSHVGIVGIGGLGTAAVKLARIRGCVVWALSGTASKKDGILGAGAHHFV
HMKDEEDVKNAAGKLDLIIDTTPANMKVAPLLELLRMGGTLCKVGLPPST
DCTYSGDLGDLIFQQKKIAGSVVTGTRRFREMMQLVEANMKFMKDTEIWK
TEHWRMTRVNEAMDEIENGTNRGYRFVLHWDE*

spliced messenger RNA

>Gchil2362.t1 ID=Gchil2362.t1|Name=Gchil2362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00004400_pilon:159632..160780+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCCGAGTCCAATAGAAACGGCACAAGCTGTGCAAGATGTGAATCA
AACACAAAAGCCACTTTTGACGGAGGGTTACGTTGTCAATGAGAGGGGAG
CAAAACTCACTTTGCAACCAGTTACGTTACCTCCCATGGCGCCCACAATG
GTGCAGGTCAAGATCTTGATGTCAGGTTTGTGCCACACCGATATTCACAT
GAGAGATAATGACACAGCAAGTTCCGACTACCCATTGGTATTGGGACACG
AGGGTATTGGTCGAGTCACTCATGTAGGCCGTTCCGTTCGTCACCTAAAA
GTAGGTGACACAGTTGCAATCAGCTGGATTCGCGACTCGTGCGGTACCTG
CCCCGCCTGTTGTTGTGGTCGGGAGAACATATGTGAACAGGGGTACCAGG
GTCTCTTTCTTTCTTCTGCGGCTGGTATATGGGGTGCATCTCCGAAACAG
TACAACTTGCATGGTGGATGTTTTGTTCGTTATCAGAGGATTGAAGAACA
TTTTGCAATCAAGATTTCGAATGGGCTGCCGCCTGATATAGCTTGTCCGT
TGGTGTGCGGCGGTGGTACAGTGTTTGAGCCATTGTGTGACTACGCCACG
CCGGGTAGTCATGTGGGTATCGTCGGGATCGGTGGTCTTGGAACTGCTGC
TGTGAAACTTGCCAGAATTAGGGGTTGCGTTGTCTGGGCGTTGAGTGGTA
CGGCTTCCAAGAAAGATGGAATCCTTGGTGCGGGTGCTCATCACTTTGTG
CACATGAAGGATGAAGAGGACGTGAAGAACGCCGCCGGAAAACTTGATTT
GATTATTGATACTACGCCAGCGAATATGAAAGTTGCTCCACTGCTAGAAT
TGTTGAGAATGGGTGGCACTCTGTGTAAAGTGGGACTTCCGCCTTCTACT
GATTGTACCTACTCTGGAGATTTAGGAGATTTAATCTTTCAGCAGAAGAA
GATCGCTGGTTCTGTGGTCACTGGGACGCGGCGATTCAGGGAAATGATGC
AACTTGTGGAGGCGAACATGAAATTTATGAAAGATACCGAAATTTGGAAG
ACTGAGCATTGGCGCATGACACGCGTGAATGAGGCTATGGATGAAATCGA
GAACGGCACGAATAGGGGATATCGCTTTGTGTTGCACTGGGACGAGTGA

protein sequence of Gchil2362.t1

>Gchil2362.t1 ID=Gchil2362.t1|Name=Gchil2362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=383bp
MGPSPIETAQAVQDVNQTQKPLLTEGYVVNERGAKLTLQPVTLPPMAPTM
VQVKILMSGLCHTDIHMRDNDTASSDYPLVLGHEGIGRVTHVGRSVRHLK
VGDTVAISWIRDSCGTCPACCCGRENICEQGYQGLFLSSAAGIWGASPKQ
YNLHGGCFVRYQRIEEHFAIKISNGLPPDIACPLVCGGGTVFEPLCDYAT
PGSHVGIVGIGGLGTAAVKLARIRGCVVWALSGTASKKDGILGAGAHHFV
HMKDEEDVKNAAGKLDLIIDTTPANMKVAPLLELLRMGGTLCKVGLPPST
DCTYSGDLGDLIFQQKKIAGSVVTGTRRFREMMQLVEANMKFMKDTEIWK
TEHWRMTRVNEAMDEIENGTNRGYRFVLHWDE*

mRNA from alignment at tig00004400_pilon:159632..160780+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2362.t1 ID=Gchil2362.t1|Name=Gchil2362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00004400_pilon:159632..160780+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCCGAGTCCAATAGAAACGGCACAAGCTGTGCAAGATGTGAATCA
AACACAAAAGCCACTTTTGACGGAGGGTTACGTTGTCAATGAGAGGGGAG
CAAAACTCACTTTGCAACCAGTTACGTTACCTCCCATGGCGCCCACAATG
GTGCAGGTCAAGATCTTGATGTCAGGTTTGTGCCACACCGATATTCACAT
GAGAGATAATGACACAGCAAGTTCCGACTACCCATTGGTATTGGGACACG
AGGGTATTGGTCGAGTCACTCATGTAGGCCGTTCCGTTCGTCACCTAAAA
GTAGGTGACACAGTTGCAATCAGCTGGATTCGCGACTCGTGCGGTACCTG
CCCCGCCTGTTGTTGTGGTCGGGAGAACATATGTGAACAGGGGTACCAGG
GTCTCTTTCTTTCTTCTGCGGCTGGTATATGGGGTGCATCTCCGAAACAG
TACAACTTGCATGGTGGATGTTTTGTTCGTTATCAGAGGATTGAAGAACA
TTTTGCAATCAAGATTTCGAATGGGCTGCCGCCTGATATAGCTTGTCCGT
TGGTGTGCGGCGGTGGTACAGTGTTTGAGCCATTGTGTGACTACGCCACG
CCGGGTAGTCATGTGGGTATCGTCGGGATCGGTGGTCTTGGAACTGCTGC
TGTGAAACTTGCCAGAATTAGGGGTTGCGTTGTCTGGGCGTTGAGTGGTA
CGGCTTCCAAGAAAGATGGAATCCTTGGTGCGGGTGCTCATCACTTTGTG
CACATGAAGGATGAAGAGGACGTGAAGAACGCCGCCGGAAAACTTGATTT
GATTATTGATACTACGCCAGCGAATATGAAAGTTGCTCCACTGCTAGAAT
TGTTGAGAATGGGTGGCACTCTGTGTAAAGTGGGACTTCCGCCTTCTACT
GATTGTACCTACTCTGGAGATTTAGGAGATTTAATCTTTCAGCAGAAGAA
GATCGCTGGTTCTGTGGTCACTGGGACGCGGCGATTCAGGGAAATGATGC
AACTTGTGGAGGCGAACATGAAATTTATGAAAGATACCGAAATTTGGAAG
ACTGAGCATTGGCGCATGACACGCGTGAATGAGGCTATGGATGAAATCGA
GAACGGCACGAATAGGGGATATCGCTTTGTGTTGCACTGGGACGAGTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:159632..160780+

>Gchil2362.t1 ID=Gchil2362.t1|Name=Gchil2362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00004400_pilon:159632..160780+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCCGAGTCCAATAGAAACGGCACAAGCTGTGCAAGATGTGAATCA
AACACAAAAGCCACTTTTGACGGAGGGTTACGTTGTCAATGAGAGGGGAG
CAAAACTCACTTTGCAACCAGTTACGTTACCTCCCATGGCGCCCACAATG
GTGCAGGTCAAGATCTTGATGTCAGGTTTGTGCCACACCGATATTCACAT
GAGAGATAATGACACAGCAAGTTCCGACTACCCATTGGTATTGGGACACG
AGGGTATTGGTCGAGTCACTCATGTAGGCCGTTCCGTTCGTCACCTAAAA
GTAGGTGACACAGTTGCAATCAGCTGGATTCGCGACTCGTGCGGTACCTG
CCCCGCCTGTTGTTGTGGTCGGGAGAACATATGTGAACAGGGGTACCAGG
GTCTCTTTCTTTCTTCTGCGGCTGGTATATGGGGTGCATCTCCGAAACAG
TACAACTTGCATGGTGGATGTTTTGTTCGTTATCAGAGGATTGAAGAACA
TTTTGCAATCAAGATTTCGAATGGGCTGCCGCCTGATATAGCTTGTCCGT
TGGTGTGCGGCGGTGGTACAGTGTTTGAGCCATTGTGTGACTACGCCACG
CCGGGTAGTCATGTGGGTATCGTCGGGATCGGTGGTCTTGGAACTGCTGC
TGTGAAACTTGCCAGAATTAGGGGTTGCGTTGTCTGGGCGTTGAGTGGTA
CGGCTTCCAAGAAAGATGGAATCCTTGGTGCGGGTGCTCATCACTTTGTG
CACATGAAGGATGAAGAGGACGTGAAGAACGCCGCCGGAAAACTTGATTT
GATTATTGATACTACGCCAGCGAATATGAAAGTTGCTCCACTGCTAGAAT
TGTTGAGAATGGGTGGCACTCTGTGTAAAGTGGGACTTCCGCCTTCTACT
GATTGTACCTACTCTGGAGATTTAGGAGATTTAATCTTTCAGCAGAAGAA
GATCGCTGGTTCTGTGGTCACTGGGACGCGGCGATTCAGGGAAATGATGC
AACTTGTGGAGGCGAACATGAAATTTATGAAAGATACCGAAATTTGGAAG
ACTGAGCATTGGCGCATGACACGCGTGAATGAGGCTATGGATGAAATCGA
GAACGGCACGAATAGGGGATATCGCTTTGTGTTGCACTGGGACGAGTGA