Gchil2358.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2358.t1
Unique NameGchil2358.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length830
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:150333..152822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2358Gchil2358Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 150333..152822 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2358.t1.stop1Gchil2358.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 150333..150335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2358.t1.CDS1Gchil2358.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 150333..152822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2358.t1.exon1Gchil2358.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 150333..152822 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2358.t1.start1Gchil2358.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 152820..152822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2358.t1Gchil2358.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 150333..152822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2358.t1 ID=Gchil2358.t1|Name=Gchil2358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=830bp
MSSVSEEDVHHLQKFLESREVVSVVDAVSIVARIVENAARPDTDSPSSVA
AARKVLSDLHENPSSTAIPKLLDICSVHARSQVLDVFILTSQAWKALVAA
FVSRDASFSTEIGLGVIECALRSAFTMLVRAVSVQHGIRGSDVPDIARCV
KITKFYCLNAAKCSKVLLSLKSRSNSGFDPFVDVLSCAMQLVAVTSHVLL
FDPVLDSSTLTSIQEQLCPLIGTTLGSIMIMVHQVPDDESSSKTIGLFCK
CLDKVAATQNFLVTCFEDLAVHSFLLLAFLHFMRLEVSEVDFEANNCVPP
VNLSDRRWSLFRNCLVPSLFLFCGKAYAELILLRERATGQTYLDTISASA
AQCIVLACGLRPKEDDRLDMENFLLQQISDSNPATAYVAHESLQSLYSGS
LNDHGRLKFIAKLFQYLRVAFAIDSPHLDNRWIPLLTDMLEKHFEHFGTE
KRLSHLLQWASTKGEVGNKKSMDDPPDQLTLRILSSLSRHMVNKRRESKS
SDGCGGKEDVREEERELVEKLLTLLAGDESGLVPHKLKDDICKVCSSESA
PAWAIPLSPFLSDPKSVNERALKRISQEAPLSVVCSAFNILQPSSMTSKD
MESICKFSGSLLERHGYSVGPAIAAFVARSSSKLHGSVSVADWQYLSDAL
EQTVLYVLSSVRKDPHWSVLSNMTLYHAAMTLSYIRGHSISDNDRKTVVT
LSDRILPLAEEVLERLKVSRNASLTLGGRGLVNERMAAEREIRIVKGRTR
NVQRYSDASDLDFAETMRVARLGILETLCDLLSKKSSEANHNLKSEIRSL
NVLLGLASQLFPDAQNNSKDGLTSYSTEP*
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spliced messenger RNA

>Gchil2358.t1 ID=Gchil2358.t1|Name=Gchil2358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00004400_pilon:150333..152822- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCTGTCAGTGAAGAAGATGTTCATCATTTGCAAAAGTTCCTTGA
GAGCAGGGAGGTGGTCAGCGTTGTTGACGCCGTCTCCATCGTCGCTCGCA
TTGTCGAAAATGCCGCTCGCCCCGATACCGACTCTCCATCTTCCGTAGCG
GCTGCTCGGAAAGTTCTCTCAGACCTGCATGAAAACCCTTCCTCCACGGC
AATCCCGAAGCTCTTGGACATATGCTCGGTGCATGCCCGTTCTCAGGTCT
TGGATGTGTTTATTCTTACTTCTCAGGCATGGAAAGCGTTGGTTGCTGCG
TTTGTTAGCCGGGACGCTTCTTTTTCAACAGAAATAGGACTTGGCGTCAT
TGAGTGCGCTTTGCGGAGTGCTTTCACGATGCTGGTTCGTGCAGTTTCTG
TGCAACACGGAATACGGGGCTCGGACGTACCAGATATCGCTCGTTGCGTG
AAGATCACAAAGTTTTATTGTCTAAACGCGGCTAAATGCTCAAAGGTACT
ACTATCGTTGAAGAGTAGAAGTAACTCCGGTTTTGATCCATTTGTTGATG
TGCTATCCTGTGCGATGCAGTTGGTGGCAGTCACATCTCACGTTTTGTTG
TTTGACCCAGTGTTGGATTCGTCAACTCTAACCAGCATTCAAGAACAATT
ATGTCCTCTCATCGGCACAACGCTGGGTTCGATTATGATCATGGTACATC
AAGTTCCAGATGATGAGTCCAGCTCAAAGACAATTGGATTATTCTGTAAA
TGCCTTGATAAGGTTGCAGCCACACAAAACTTTCTGGTAACCTGTTTTGA
GGATTTAGCTGTCCACTCTTTTTTATTGCTTGCGTTTCTTCACTTTATGC
GTTTGGAAGTCAGCGAAGTTGATTTCGAAGCCAACAATTGTGTACCTCCG
GTTAATTTAAGTGACCGGCGATGGTCCCTTTTCAGAAACTGCCTAGTGCC
GTCGCTATTCCTATTTTGTGGGAAGGCATATGCAGAACTCATTTTGCTGC
GAGAGCGAGCCACCGGTCAAACATATCTGGACACCATTAGTGCATCTGCG
GCGCAGTGCATTGTTCTAGCATGTGGATTACGACCGAAAGAGGATGATCG
GCTCGATATGGAAAACTTTCTTCTTCAACAGATAAGCGATAGTAATCCTG
CCACGGCGTATGTCGCCCATGAAAGCCTCCAAAGCTTGTACAGCGGTTCC
TTAAATGATCATGGCCGATTGAAGTTCATAGCTAAGCTTTTTCAGTACCT
TAGGGTGGCCTTCGCCATCGACTCTCCTCATCTGGACAACCGCTGGATTC
CTCTTCTGACAGATATGCTTGAAAAACATTTCGAGCATTTTGGAACTGAG
AAAAGACTATCCCATCTTCTGCAGTGGGCATCGACGAAAGGCGAAGTAGG
AAACAAGAAGTCAATGGATGACCCACCGGACCAACTGACTCTGCGGATAC
TGAGCTCGCTTTCTAGGCACATGGTAAACAAGCGGAGGGAATCCAAAAGC
TCAGATGGTTGTGGAGGAAAAGAGGACGTCCGCGAAGAAGAAAGAGAATT
GGTTGAGAAACTCTTGACTCTCTTAGCGGGTGATGAAAGTGGGCTCGTGC
CACACAAATTGAAGGATGATATTTGCAAGGTTTGCTCGAGCGAAAGTGCA
CCTGCATGGGCTATTCCGCTTTCTCCGTTCCTTTCGGATCCAAAATCAGT
GAACGAAAGGGCGCTGAAACGCATCTCTCAAGAGGCTCCGCTATCTGTAG
TATGTTCAGCCTTCAACATTTTACAACCGTCTTCAATGACGTCGAAAGAT
ATGGAATCAATTTGCAAATTCTCGGGCTCTTTGTTGGAGAGACACGGTTA
CTCTGTTGGGCCAGCAATAGCCGCTTTTGTTGCCAGATCTTCGTCTAAGC
TGCATGGGTCGGTGTCAGTTGCGGACTGGCAGTACTTGAGTGACGCACTG
GAACAAACCGTCTTGTACGTTTTGTCGTCTGTTAGAAAAGATCCGCATTG
GTCAGTCTTGTCGAACATGACTTTATATCACGCAGCAATGACGTTGTCGT
ATATACGTGGTCATTCTATTTCTGACAATGATCGAAAGACTGTAGTCACC
CTTTCCGACCGCATTTTGCCCTTGGCTGAAGAAGTATTGGAGAGGCTAAA
GGTTTCCAGGAACGCCAGCCTAACCCTCGGTGGAAGGGGTCTAGTAAACG
AGAGAATGGCTGCAGAACGTGAAATAAGGATTGTTAAGGGGAGAACCCGC
AATGTTCAGCGTTATTCAGATGCTTCTGATCTTGACTTCGCGGAAACCAT
GCGCGTAGCGAGGCTAGGTATATTGGAAACCCTATGCGACCTCTTGAGCA
AAAAGAGTAGTGAAGCGAACCACAATTTGAAATCAGAAATCCGAAGTCTT
AATGTTCTTCTTGGCTTGGCATCTCAACTTTTCCCTGATGCTCAGAACAA
TTCTAAAGATGGTTTAACCTCTTACAGTACTGAACCGTGA
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protein sequence of Gchil2358.t1

>Gchil2358.t1 ID=Gchil2358.t1|Name=Gchil2358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=830bp
MSSVSEEDVHHLQKFLESREVVSVVDAVSIVARIVENAARPDTDSPSSVA
AARKVLSDLHENPSSTAIPKLLDICSVHARSQVLDVFILTSQAWKALVAA
FVSRDASFSTEIGLGVIECALRSAFTMLVRAVSVQHGIRGSDVPDIARCV
KITKFYCLNAAKCSKVLLSLKSRSNSGFDPFVDVLSCAMQLVAVTSHVLL
FDPVLDSSTLTSIQEQLCPLIGTTLGSIMIMVHQVPDDESSSKTIGLFCK
CLDKVAATQNFLVTCFEDLAVHSFLLLAFLHFMRLEVSEVDFEANNCVPP
VNLSDRRWSLFRNCLVPSLFLFCGKAYAELILLRERATGQTYLDTISASA
AQCIVLACGLRPKEDDRLDMENFLLQQISDSNPATAYVAHESLQSLYSGS
LNDHGRLKFIAKLFQYLRVAFAIDSPHLDNRWIPLLTDMLEKHFEHFGTE
KRLSHLLQWASTKGEVGNKKSMDDPPDQLTLRILSSLSRHMVNKRRESKS
SDGCGGKEDVREEERELVEKLLTLLAGDESGLVPHKLKDDICKVCSSESA
PAWAIPLSPFLSDPKSVNERALKRISQEAPLSVVCSAFNILQPSSMTSKD
MESICKFSGSLLERHGYSVGPAIAAFVARSSSKLHGSVSVADWQYLSDAL
EQTVLYVLSSVRKDPHWSVLSNMTLYHAAMTLSYIRGHSISDNDRKTVVT
LSDRILPLAEEVLERLKVSRNASLTLGGRGLVNERMAAEREIRIVKGRTR
NVQRYSDASDLDFAETMRVARLGILETLCDLLSKKSSEANHNLKSEIRSL
NVLLGLASQLFPDAQNNSKDGLTSYSTEP*
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mRNA from alignment at tig00004400_pilon:150333..152822-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2358.t1 ID=Gchil2358.t1|Name=Gchil2358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00004400_pilon:150333..152822- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCTGTCAGTGAAGAAGATGTTCATCATTTGCAAAAGTTCCTTGA
GAGCAGGGAGGTGGTCAGCGTTGTTGACGCCGTCTCCATCGTCGCTCGCA
TTGTCGAAAATGCCGCTCGCCCCGATACCGACTCTCCATCTTCCGTAGCG
GCTGCTCGGAAAGTTCTCTCAGACCTGCATGAAAACCCTTCCTCCACGGC
AATCCCGAAGCTCTTGGACATATGCTCGGTGCATGCCCGTTCTCAGGTCT
TGGATGTGTTTATTCTTACTTCTCAGGCATGGAAAGCGTTGGTTGCTGCG
TTTGTTAGCCGGGACGCTTCTTTTTCAACAGAAATAGGACTTGGCGTCAT
TGAGTGCGCTTTGCGGAGTGCTTTCACGATGCTGGTTCGTGCAGTTTCTG
TGCAACACGGAATACGGGGCTCGGACGTACCAGATATCGCTCGTTGCGTG
AAGATCACAAAGTTTTATTGTCTAAACGCGGCTAAATGCTCAAAGGTACT
ACTATCGTTGAAGAGTAGAAGTAACTCCGGTTTTGATCCATTTGTTGATG
TGCTATCCTGTGCGATGCAGTTGGTGGCAGTCACATCTCACGTTTTGTTG
TTTGACCCAGTGTTGGATTCGTCAACTCTAACCAGCATTCAAGAACAATT
ATGTCCTCTCATCGGCACAACGCTGGGTTCGATTATGATCATGGTACATC
AAGTTCCAGATGATGAGTCCAGCTCAAAGACAATTGGATTATTCTGTAAA
TGCCTTGATAAGGTTGCAGCCACACAAAACTTTCTGGTAACCTGTTTTGA
GGATTTAGCTGTCCACTCTTTTTTATTGCTTGCGTTTCTTCACTTTATGC
GTTTGGAAGTCAGCGAAGTTGATTTCGAAGCCAACAATTGTGTACCTCCG
GTTAATTTAAGTGACCGGCGATGGTCCCTTTTCAGAAACTGCCTAGTGCC
GTCGCTATTCCTATTTTGTGGGAAGGCATATGCAGAACTCATTTTGCTGC
GAGAGCGAGCCACCGGTCAAACATATCTGGACACCATTAGTGCATCTGCG
GCGCAGTGCATTGTTCTAGCATGTGGATTACGACCGAAAGAGGATGATCG
GCTCGATATGGAAAACTTTCTTCTTCAACAGATAAGCGATAGTAATCCTG
CCACGGCGTATGTCGCCCATGAAAGCCTCCAAAGCTTGTACAGCGGTTCC
TTAAATGATCATGGCCGATTGAAGTTCATAGCTAAGCTTTTTCAGTACCT
TAGGGTGGCCTTCGCCATCGACTCTCCTCATCTGGACAACCGCTGGATTC
CTCTTCTGACAGATATGCTTGAAAAACATTTCGAGCATTTTGGAACTGAG
AAAAGACTATCCCATCTTCTGCAGTGGGCATCGACGAAAGGCGAAGTAGG
AAACAAGAAGTCAATGGATGACCCACCGGACCAACTGACTCTGCGGATAC
TGAGCTCGCTTTCTAGGCACATGGTAAACAAGCGGAGGGAATCCAAAAGC
TCAGATGGTTGTGGAGGAAAAGAGGACGTCCGCGAAGAAGAAAGAGAATT
GGTTGAGAAACTCTTGACTCTCTTAGCGGGTGATGAAAGTGGGCTCGTGC
CACACAAATTGAAGGATGATATTTGCAAGGTTTGCTCGAGCGAAAGTGCA
CCTGCATGGGCTATTCCGCTTTCTCCGTTCCTTTCGGATCCAAAATCAGT
GAACGAAAGGGCGCTGAAACGCATCTCTCAAGAGGCTCCGCTATCTGTAG
TATGTTCAGCCTTCAACATTTTACAACCGTCTTCAATGACGTCGAAAGAT
ATGGAATCAATTTGCAAATTCTCGGGCTCTTTGTTGGAGAGACACGGTTA
CTCTGTTGGGCCAGCAATAGCCGCTTTTGTTGCCAGATCTTCGTCTAAGC
TGCATGGGTCGGTGTCAGTTGCGGACTGGCAGTACTTGAGTGACGCACTG
GAACAAACCGTCTTGTACGTTTTGTCGTCTGTTAGAAAAGATCCGCATTG
GTCAGTCTTGTCGAACATGACTTTATATCACGCAGCAATGACGTTGTCGT
ATATACGTGGTCATTCTATTTCTGACAATGATCGAAAGACTGTAGTCACC
CTTTCCGACCGCATTTTGCCCTTGGCTGAAGAAGTATTGGAGAGGCTAAA
GGTTTCCAGGAACGCCAGCCTAACCCTCGGTGGAAGGGGTCTAGTAAACG
AGAGAATGGCTGCAGAACGTGAAATAAGGATTGTTAAGGGGAGAACCCGC
AATGTTCAGCGTTATTCAGATGCTTCTGATCTTGACTTCGCGGAAACCAT
GCGCGTAGCGAGGCTAGGTATATTGGAAACCCTATGCGACCTCTTGAGCA
AAAAGAGTAGTGAAGCGAACCACAATTTGAAATCAGAAATCCGAAGTCTT
AATGTTCTTCTTGGCTTGGCATCTCAACTTTTCCCTGATGCTCAGAACAA
TTCTAAAGATGGTTTAACCTCTTACAGTACTGAACCGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:150333..152822-

>Gchil2358.t1 ID=Gchil2358.t1|Name=Gchil2358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2490bp|location=Sequence derived from alignment at tig00004400_pilon:150333..152822- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCTGTCAGTGAAGAAGATGTTCATCATTTGCAAAAGTTCCTTGA
GAGCAGGGAGGTGGTCAGCGTTGTTGACGCCGTCTCCATCGTCGCTCGCA
TTGTCGAAAATGCCGCTCGCCCCGATACCGACTCTCCATCTTCCGTAGCG
GCTGCTCGGAAAGTTCTCTCAGACCTGCATGAAAACCCTTCCTCCACGGC
AATCCCGAAGCTCTTGGACATATGCTCGGTGCATGCCCGTTCTCAGGTCT
TGGATGTGTTTATTCTTACTTCTCAGGCATGGAAAGCGTTGGTTGCTGCG
TTTGTTAGCCGGGACGCTTCTTTTTCAACAGAAATAGGACTTGGCGTCAT
TGAGTGCGCTTTGCGGAGTGCTTTCACGATGCTGGTTCGTGCAGTTTCTG
TGCAACACGGAATACGGGGCTCGGACGTACCAGATATCGCTCGTTGCGTG
AAGATCACAAAGTTTTATTGTCTAAACGCGGCTAAATGCTCAAAGGTACT
ACTATCGTTGAAGAGTAGAAGTAACTCCGGTTTTGATCCATTTGTTGATG
TGCTATCCTGTGCGATGCAGTTGGTGGCAGTCACATCTCACGTTTTGTTG
TTTGACCCAGTGTTGGATTCGTCAACTCTAACCAGCATTCAAGAACAATT
ATGTCCTCTCATCGGCACAACGCTGGGTTCGATTATGATCATGGTACATC
AAGTTCCAGATGATGAGTCCAGCTCAAAGACAATTGGATTATTCTGTAAA
TGCCTTGATAAGGTTGCAGCCACACAAAACTTTCTGGTAACCTGTTTTGA
GGATTTAGCTGTCCACTCTTTTTTATTGCTTGCGTTTCTTCACTTTATGC
GTTTGGAAGTCAGCGAAGTTGATTTCGAAGCCAACAATTGTGTACCTCCG
GTTAATTTAAGTGACCGGCGATGGTCCCTTTTCAGAAACTGCCTAGTGCC
GTCGCTATTCCTATTTTGTGGGAAGGCATATGCAGAACTCATTTTGCTGC
GAGAGCGAGCCACCGGTCAAACATATCTGGACACCATTAGTGCATCTGCG
GCGCAGTGCATTGTTCTAGCATGTGGATTACGACCGAAAGAGGATGATCG
GCTCGATATGGAAAACTTTCTTCTTCAACAGATAAGCGATAGTAATCCTG
CCACGGCGTATGTCGCCCATGAAAGCCTCCAAAGCTTGTACAGCGGTTCC
TTAAATGATCATGGCCGATTGAAGTTCATAGCTAAGCTTTTTCAGTACCT
TAGGGTGGCCTTCGCCATCGACTCTCCTCATCTGGACAACCGCTGGATTC
CTCTTCTGACAGATATGCTTGAAAAACATTTCGAGCATTTTGGAACTGAG
AAAAGACTATCCCATCTTCTGCAGTGGGCATCGACGAAAGGCGAAGTAGG
AAACAAGAAGTCAATGGATGACCCACCGGACCAACTGACTCTGCGGATAC
TGAGCTCGCTTTCTAGGCACATGGTAAACAAGCGGAGGGAATCCAAAAGC
TCAGATGGTTGTGGAGGAAAAGAGGACGTCCGCGAAGAAGAAAGAGAATT
GGTTGAGAAACTCTTGACTCTCTTAGCGGGTGATGAAAGTGGGCTCGTGC
CACACAAATTGAAGGATGATATTTGCAAGGTTTGCTCGAGCGAAAGTGCA
CCTGCATGGGCTATTCCGCTTTCTCCGTTCCTTTCGGATCCAAAATCAGT
GAACGAAAGGGCGCTGAAACGCATCTCTCAAGAGGCTCCGCTATCTGTAG
TATGTTCAGCCTTCAACATTTTACAACCGTCTTCAATGACGTCGAAAGAT
ATGGAATCAATTTGCAAATTCTCGGGCTCTTTGTTGGAGAGACACGGTTA
CTCTGTTGGGCCAGCAATAGCCGCTTTTGTTGCCAGATCTTCGTCTAAGC
TGCATGGGTCGGTGTCAGTTGCGGACTGGCAGTACTTGAGTGACGCACTG
GAACAAACCGTCTTGTACGTTTTGTCGTCTGTTAGAAAAGATCCGCATTG
GTCAGTCTTGTCGAACATGACTTTATATCACGCAGCAATGACGTTGTCGT
ATATACGTGGTCATTCTATTTCTGACAATGATCGAAAGACTGTAGTCACC
CTTTCCGACCGCATTTTGCCCTTGGCTGAAGAAGTATTGGAGAGGCTAAA
GGTTTCCAGGAACGCCAGCCTAACCCTCGGTGGAAGGGGTCTAGTAAACG
AGAGAATGGCTGCAGAACGTGAAATAAGGATTGTTAAGGGGAGAACCCGC
AATGTTCAGCGTTATTCAGATGCTTCTGATCTTGACTTCGCGGAAACCAT
GCGCGTAGCGAGGCTAGGTATATTGGAAACCCTATGCGACCTCTTGAGCA
AAAAGAGTAGTGAAGCGAACCACAATTTGAAATCAGAAATCCGAAGTCTT
AATGTTCTTCTTGGCTTGGCATCTCAACTTTTCCCTGATGCTCAGAACAA
TTCTAAAGATGGTTTAACCTCTTACAGTACTGAACCGTGA
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