Gchil2355.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2355.t1
Unique NameGchil2355.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:142050..143546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2355Gchil2355Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 142050..143546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2355.t1.stop1Gchil2355.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 142050..142052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2355.t1.CDS1Gchil2355.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 142050..143546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2355.t1.exon1Gchil2355.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 142050..143546 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2355.t1.start1Gchil2355.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 143544..143546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2355.t1Gchil2355.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 142050..143546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2355.t1 ID=Gchil2355.t1|Name=Gchil2355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=499bp
MSDLPPTQSNTANVVSPPPLPPSSSLHQLQANFAAFTPRYSAAIHDPTSI
KPLLIPADAYFTTPRCSVCTASFTTFDLLDAHVRTCHLPHTSPHNASPLA
PIVAPASTQHSAFLPPWLRPSDSFLNETPCRNTNNTVPQYQQPLSAFAPT
SMPEMPISTPTVTKPDTSQYRCHLCNASCDTKVQFNNHCSGQKHRKKADL
FAAFKQAEISFSSESIQFHPPSTWHCLLCTVVMHAHNEVLQHLQCVKHTR
LSHRRQNQEPGVLRHPAILNPSADRLAARNMPVTAIKPPAVSAAMAAMQS
PITESQSASFSPPHHQHSDPVSQLVPSSSSSITMRGTISKFANTKTGMYA
CSVCNVTCSSNDNLNVHLASARHRKKLEGAALNHNIVCNVCQVTVSGAAN
YEAHLNGKIHAKKQQQREAATESFATSLLTLPSSPTPANGVQQPTASQAS
ASEALQPSRVSLETVEAKDDRPSAALHVRNQHPFRSVPHPSPSSSQQS*
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spliced messenger RNA

>Gchil2355.t1 ID=Gchil2355.t1|Name=Gchil2355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004400_pilon:142050..143546- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACCTGCCCCCCACCCAAAGCAACACCGCCAACGTCGTCAGCCC
CCCGCCCCTGCCCCCTTCCTCCTCGCTGCACCAACTTCAAGCCAATTTCG
CCGCCTTCACCCCGCGCTACAGCGCCGCCATCCACGACCCCACCTCCATC
AAGCCGCTTCTCATTCCGGCCGACGCCTACTTCACCACCCCGCGCTGCTC
CGTCTGCACCGCATCTTTCACCACCTTCGATCTGCTCGATGCACACGTCC
GAACTTGTCACCTCCCCCACACGTCGCCGCACAATGCCTCCCCGCTTGCC
CCCATCGTCGCCCCAGCCTCCACCCAGCACTCCGCCTTCCTTCCTCCCTG
GCTCAGGCCATCGGACTCGTTTCTCAACGAAACACCGTGTCGCAACACCA
ACAACACCGTACCGCAATACCAACAACCACTGTCTGCGTTTGCACCAACG
TCTATGCCCGAAATGCCAATTTCCACCCCCACCGTCACCAAACCAGACAC
CTCGCAATACCGCTGTCACCTTTGTAACGCGTCGTGCGACACAAAGGTGC
AGTTTAACAATCATTGCTCCGGTCAGAAGCATCGCAAGAAAGCTGACTTG
TTTGCTGCTTTCAAACAGGCCGAGATCAGTTTTTCCTCGGAATCCATCCA
ATTTCATCCGCCTTCCACCTGGCACTGTCTCCTCTGTACCGTCGTAATGC
ACGCCCACAACGAAGTTTTGCAGCACCTACAATGCGTCAAACACACGCGT
TTGTCGCACAGGAGACAGAATCAAGAGCCCGGTGTGCTGCGGCACCCCGC
GATCTTGAACCCCTCTGCTGACCGCCTTGCGGCCCGTAATATGCCAGTCA
CTGCCATCAAACCCCCCGCGGTATCGGCTGCCATGGCCGCCATGCAGTCG
CCCATCACCGAATCGCAATCTGCCTCGTTTTCGCCGCCCCATCACCAGCA
CTCAGACCCTGTCTCGCAACTTGTGCCTTCATCATCGTCGTCCATCACCA
TGCGAGGCACTATTTCTAAATTCGCCAACACCAAGACCGGCATGTACGCA
TGTTCCGTGTGTAACGTCACCTGCAGCTCCAACGATAACCTCAACGTCCA
TTTGGCCAGCGCGCGTCACAGAAAGAAGCTTGAAGGCGCCGCGCTCAATC
ACAACATCGTTTGTAACGTGTGTCAAGTTACTGTTTCCGGCGCCGCCAAC
TATGAGGCGCATCTCAACGGAAAGATACATGCGAAGAAACAACAACAACG
AGAAGCAGCTACGGAGTCTTTTGCAACATCGTTGCTTACTTTGCCATCAT
CGCCTACACCTGCAAACGGGGTCCAGCAGCCTACTGCGTCGCAAGCGAGC
GCATCAGAGGCACTGCAGCCTTCGCGTGTATCGCTTGAGACGGTCGAGGC
AAAGGATGATAGACCTTCTGCTGCGTTGCATGTTCGAAATCAGCATCCAT
TTCGGTCTGTCCCACACCCCTCGCCTTCTTCAAGCCAACAGTCTTAG
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protein sequence of Gchil2355.t1

>Gchil2355.t1 ID=Gchil2355.t1|Name=Gchil2355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=499bp
MSDLPPTQSNTANVVSPPPLPPSSSLHQLQANFAAFTPRYSAAIHDPTSI
KPLLIPADAYFTTPRCSVCTASFTTFDLLDAHVRTCHLPHTSPHNASPLA
PIVAPASTQHSAFLPPWLRPSDSFLNETPCRNTNNTVPQYQQPLSAFAPT
SMPEMPISTPTVTKPDTSQYRCHLCNASCDTKVQFNNHCSGQKHRKKADL
FAAFKQAEISFSSESIQFHPPSTWHCLLCTVVMHAHNEVLQHLQCVKHTR
LSHRRQNQEPGVLRHPAILNPSADRLAARNMPVTAIKPPAVSAAMAAMQS
PITESQSASFSPPHHQHSDPVSQLVPSSSSSITMRGTISKFANTKTGMYA
CSVCNVTCSSNDNLNVHLASARHRKKLEGAALNHNIVCNVCQVTVSGAAN
YEAHLNGKIHAKKQQQREAATESFATSLLTLPSSPTPANGVQQPTASQAS
ASEALQPSRVSLETVEAKDDRPSAALHVRNQHPFRSVPHPSPSSSQQS*
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mRNA from alignment at tig00004400_pilon:142050..143546-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2355.t1 ID=Gchil2355.t1|Name=Gchil2355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004400_pilon:142050..143546- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGACCTGCCCCCCACCCAAAGCAACACCGCCAACGTCGTCAGCCC
CCCGCCCCTGCCCCCTTCCTCCTCGCTGCACCAACTTCAAGCCAATTTCG
CCGCCTTCACCCCGCGCTACAGCGCCGCCATCCACGACCCCACCTCCATC
AAGCCGCTTCTCATTCCGGCCGACGCCTACTTCACCACCCCGCGCTGCTC
CGTCTGCACCGCATCTTTCACCACCTTCGATCTGCTCGATGCACACGTCC
GAACTTGTCACCTCCCCCACACGTCGCCGCACAATGCCTCCCCGCTTGCC
CCCATCGTCGCCCCAGCCTCCACCCAGCACTCCGCCTTCCTTCCTCCCTG
GCTCAGGCCATCGGACTCGTTTCTCAACGAAACACCGTGTCGCAACACCA
ACAACACCGTACCGCAATACCAACAACCACTGTCTGCGTTTGCACCAACG
TCTATGCCCGAAATGCCAATTTCCACCCCCACCGTCACCAAACCAGACAC
CTCGCAATACCGCTGTCACCTTTGTAACGCGTCGTGCGACACAAAGGTGC
AGTTTAACAATCATTGCTCCGGTCAGAAGCATCGCAAGAAAGCTGACTTG
TTTGCTGCTTTCAAACAGGCCGAGATCAGTTTTTCCTCGGAATCCATCCA
ATTTCATCCGCCTTCCACCTGGCACTGTCTCCTCTGTACCGTCGTAATGC
ACGCCCACAACGAAGTTTTGCAGCACCTACAATGCGTCAAACACACGCGT
TTGTCGCACAGGAGACAGAATCAAGAGCCCGGTGTGCTGCGGCACCCCGC
GATCTTGAACCCCTCTGCTGACCGCCTTGCGGCCCGTAATATGCCAGTCA
CTGCCATCAAACCCCCCGCGGTATCGGCTGCCATGGCCGCCATGCAGTCG
CCCATCACCGAATCGCAATCTGCCTCGTTTTCGCCGCCCCATCACCAGCA
CTCAGACCCTGTCTCGCAACTTGTGCCTTCATCATCGTCGTCCATCACCA
TGCGAGGCACTATTTCTAAATTCGCCAACACCAAGACCGGCATGTACGCA
TGTTCCGTGTGTAACGTCACCTGCAGCTCCAACGATAACCTCAACGTCCA
TTTGGCCAGCGCGCGTCACAGAAAGAAGCTTGAAGGCGCCGCGCTCAATC
ACAACATCGTTTGTAACGTGTGTCAAGTTACTGTTTCCGGCGCCGCCAAC
TATGAGGCGCATCTCAACGGAAAGATACATGCGAAGAAACAACAACAACG
AGAAGCAGCTACGGAGTCTTTTGCAACATCGTTGCTTACTTTGCCATCAT
CGCCTACACCTGCAAACGGGGTCCAGCAGCCTACTGCGTCGCAAGCGAGC
GCATCAGAGGCACTGCAGCCTTCGCGTGTATCGCTTGAGACGGTCGAGGC
AAAGGATGATAGACCTTCTGCTGCGTTGCATGTTCGAAATCAGCATCCAT
TTCGGTCTGTCCCACACCCCTCGCCTTCTTCAAGCCAACAGTCTTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:142050..143546-

>Gchil2355.t1 ID=Gchil2355.t1|Name=Gchil2355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00004400_pilon:142050..143546- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGACCTGCCCCCCACCCAAAGCAACACCGCCAACGTCGTCAGCCC
CCCGCCCCTGCCCCCTTCCTCCTCGCTGCACCAACTTCAAGCCAATTTCG
CCGCCTTCACCCCGCGCTACAGCGCCGCCATCCACGACCCCACCTCCATC
AAGCCGCTTCTCATTCCGGCCGACGCCTACTTCACCACCCCGCGCTGCTC
CGTCTGCACCGCATCTTTCACCACCTTCGATCTGCTCGATGCACACGTCC
GAACTTGTCACCTCCCCCACACGTCGCCGCACAATGCCTCCCCGCTTGCC
CCCATCGTCGCCCCAGCCTCCACCCAGCACTCCGCCTTCCTTCCTCCCTG
GCTCAGGCCATCGGACTCGTTTCTCAACGAAACACCGTGTCGCAACACCA
ACAACACCGTACCGCAATACCAACAACCACTGTCTGCGTTTGCACCAACG
TCTATGCCCGAAATGCCAATTTCCACCCCCACCGTCACCAAACCAGACAC
CTCGCAATACCGCTGTCACCTTTGTAACGCGTCGTGCGACACAAAGGTGC
AGTTTAACAATCATTGCTCCGGTCAGAAGCATCGCAAGAAAGCTGACTTG
TTTGCTGCTTTCAAACAGGCCGAGATCAGTTTTTCCTCGGAATCCATCCA
ATTTCATCCGCCTTCCACCTGGCACTGTCTCCTCTGTACCGTCGTAATGC
ACGCCCACAACGAAGTTTTGCAGCACCTACAATGCGTCAAACACACGCGT
TTGTCGCACAGGAGACAGAATCAAGAGCCCGGTGTGCTGCGGCACCCCGC
GATCTTGAACCCCTCTGCTGACCGCCTTGCGGCCCGTAATATGCCAGTCA
CTGCCATCAAACCCCCCGCGGTATCGGCTGCCATGGCCGCCATGCAGTCG
CCCATCACCGAATCGCAATCTGCCTCGTTTTCGCCGCCCCATCACCAGCA
CTCAGACCCTGTCTCGCAACTTGTGCCTTCATCATCGTCGTCCATCACCA
TGCGAGGCACTATTTCTAAATTCGCCAACACCAAGACCGGCATGTACGCA
TGTTCCGTGTGTAACGTCACCTGCAGCTCCAACGATAACCTCAACGTCCA
TTTGGCCAGCGCGCGTCACAGAAAGAAGCTTGAAGGCGCCGCGCTCAATC
ACAACATCGTTTGTAACGTGTGTCAAGTTACTGTTTCCGGCGCCGCCAAC
TATGAGGCGCATCTCAACGGAAAGATACATGCGAAGAAACAACAACAACG
AGAAGCAGCTACGGAGTCTTTTGCAACATCGTTGCTTACTTTGCCATCAT
CGCCTACACCTGCAAACGGGGTCCAGCAGCCTACTGCGTCGCAAGCGAGC
GCATCAGAGGCACTGCAGCCTTCGCGTGTATCGCTTGAGACGGTCGAGGC
AAAGGATGATAGACCTTCTGCTGCGTTGCATGTTCGAAATCAGCATCCAT
TTCGGTCTGTCCCACACCCCTCGCCTTCTTCAAGCCAACAGTCTTAG
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