Gchil2349.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2349.t1
Unique Name	Gchil2349.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:130669..132531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2349	Gchil2349	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 130669..132531 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2349.t1.start1	Gchil2349.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 130669..130671 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2349.t1.CDS1	Gchil2349.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 130669..132531 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2349.t1.exon1	Gchil2349.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 130669..132531 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2349.t1.stop1	Gchil2349.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 132529..132531 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2349.t1	Gchil2349.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 130669..132531 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:130669..132531+
coding sequence from alignment at tig00004400_pilon:130669..132531+

mRNA sequence

>Gchil2349.t1 ID=Gchil2349.t1|Name=Gchil2349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp
MTTLKQSVASLMAFFEKKPLEAHSQCNNTKNNGNSMENSTLKPELKADLD
TMALEFWKELLRHAQQSKIESIDKVLSSVGGNVKDNLAVSVSTEVHKREL
LATLEAIHKSLKNQCGQGKGSVSEDQVSIISLKRRLGEISEKARNAKEDL
HLAKKETHDLEYVCAEYEERNEKLSKSLYEARTENRELKAHKKTLLETTK
VLESRVQRLQTARVTGEVEALQAIHKAEMAELVATQASLRCMNYHKQLRE
AKCSSHAVQEHLDGLERVLDEMKILLTSSSSTSESSSPRRLKRPLELLVR
KGSKLLGRVGASVFRSRNETDMNGRNDQEWVSETDIRATNEHGDDALAPY
SESKQPKVQVSRSNDQHERRSQTGLFQRKKTGKVCHVTKKEEDGGPAANE
NLENGSAPKSGRMLHGLLSRSNTQRRRYSPPRLFQKLTSRLRHLTSGSRS
EREAIDNLEEQINQTDSIRRGSIRVDSAETEVVPNLQEGPTNLAEFKRIL
SLGSNPKHGSRLQARDPLAFESLSKTLKSLEKNLNVLRDVVNSKEEDVQR
LQSELREATKLSDEFEQDLKKELHKRLEMEKILTAKEQEIFPVEEDLYKS
ERKNSSIRGKVIVESLHRLV*

spliced messenger RNA

>Gchil2349.t1 ID=Gchil2349.t1|Name=Gchil2349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00004400_pilon:130669..132531+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACATTGAAGCAATCCGTTGCGAGTCTGATGGCGTTCTTCGAGAA
GAAGCCTCTTGAAGCCCATTCGCAATGCAATAATACGAAGAATAATGGAA
ATTCAATGGAGAATTCCACGTTGAAACCCGAGCTGAAAGCTGACCTTGAT
ACCATGGCCCTTGAGTTTTGGAAGGAACTGCTCCGCCATGCGCAACAGAG
CAAAATTGAAAGCATCGATAAGGTTCTCTCAAGCGTCGGCGGTAATGTAA
AGGACAATTTGGCTGTCAGTGTTTCAACGGAGGTACACAAGCGGGAGCTA
CTTGCTACTCTTGAAGCAATCCACAAATCTCTCAAGAATCAATGTGGACA
GGGGAAAGGGTCGGTCAGCGAAGATCAAGTCTCTATCATCTCTTTGAAAC
GTCGCTTAGGGGAGATTTCAGAAAAAGCCCGGAATGCGAAGGAAGACCTT
CACCTAGCGAAGAAAGAAACTCATGACCTCGAATACGTCTGCGCAGAATA
CGAAGAGAGGAACGAGAAGCTTTCCAAATCCTTGTATGAAGCAAGGACCG
AAAACCGTGAGTTGAAAGCACATAAGAAGACTCTTTTAGAGACAACAAAA
GTGTTGGAAAGTAGAGTTCAGCGGTTGCAAACTGCAAGAGTAACAGGCGA
GGTAGAGGCGCTTCAGGCAATTCATAAAGCGGAGATGGCGGAATTGGTGG
CCACCCAGGCCTCCTTGAGATGCATGAACTACCACAAACAGCTCAGGGAA
GCGAAATGCTCCTCACATGCAGTGCAGGAACACCTGGATGGGCTAGAACG
GGTACTGGACGAGATGAAAATTTTGCTCACTAGTAGCTCCAGTACTTCGG
AGAGTTCTAGCCCTCGCAGACTAAAGAGGCCTCTCGAATTGCTTGTACGC
AAGGGGTCCAAACTACTTGGAAGAGTGGGAGCGTCAGTATTTCGTAGTAG
AAATGAAACAGACATGAATGGGAGAAACGACCAAGAATGGGTTTCTGAAA
CGGATATAAGAGCTACAAACGAACACGGGGATGACGCTTTGGCGCCATAC
AGTGAAAGCAAGCAGCCAAAAGTCCAAGTCTCTCGTTCGAACGACCAACA
CGAACGAAGAAGTCAAACAGGGCTTTTCCAGAGGAAGAAAACAGGCAAGG
TGTGCCATGTAACGAAGAAAGAAGAAGATGGGGGCCCTGCTGCAAACGAG
AACTTGGAAAATGGCTCAGCCCCGAAGAGCGGAAGGATGCTTCATGGCCT
TTTATCGCGCTCAAACACCCAAAGAAGGCGTTACAGTCCACCAAGACTTT
TCCAAAAGTTAACTAGTCGGCTTCGTCATCTGACGAGCGGGTCACGCTCT
GAAAGAGAAGCTATTGATAACTTAGAAGAACAGATCAACCAAACAGACAG
CATTCGGCGCGGATCCATTCGCGTCGATTCCGCGGAGACTGAAGTTGTTC
CAAACCTACAAGAGGGGCCAACCAATCTAGCAGAATTCAAACGCATTCTC
TCTCTAGGTTCCAATCCAAAACATGGTAGCCGGTTGCAAGCACGGGATCC
TTTGGCTTTTGAATCCTTATCAAAGACGCTGAAATCTCTTGAAAAGAACT
TGAACGTTCTAAGGGATGTTGTAAACAGCAAGGAGGAAGATGTACAGCGG
CTGCAATCAGAGCTTCGAGAGGCGACAAAACTTTCGGATGAATTTGAACA
AGATTTAAAGAAGGAGTTGCATAAGCGGTTGGAAATGGAAAAGATCTTGA
CTGCAAAAGAGCAGGAGATATTTCCTGTGGAGGAAGACCTCTACAAATCG
GAGCGTAAGAATTCCAGTATTAGGGGGAAAGTAATCGTAGAGTCATTGCA
TCGTTTAGTCTAG

protein sequence of Gchil2349.t1

>Gchil2349.t1 ID=Gchil2349.t1|Name=Gchil2349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=621bp
MTTLKQSVASLMAFFEKKPLEAHSQCNNTKNNGNSMENSTLKPELKADLD
TMALEFWKELLRHAQQSKIESIDKVLSSVGGNVKDNLAVSVSTEVHKREL
LATLEAIHKSLKNQCGQGKGSVSEDQVSIISLKRRLGEISEKARNAKEDL
HLAKKETHDLEYVCAEYEERNEKLSKSLYEARTENRELKAHKKTLLETTK
VLESRVQRLQTARVTGEVEALQAIHKAEMAELVATQASLRCMNYHKQLRE
AKCSSHAVQEHLDGLERVLDEMKILLTSSSSTSESSSPRRLKRPLELLVR
KGSKLLGRVGASVFRSRNETDMNGRNDQEWVSETDIRATNEHGDDALAPY
SESKQPKVQVSRSNDQHERRSQTGLFQRKKTGKVCHVTKKEEDGGPAANE
NLENGSAPKSGRMLHGLLSRSNTQRRRYSPPRLFQKLTSRLRHLTSGSRS
EREAIDNLEEQINQTDSIRRGSIRVDSAETEVVPNLQEGPTNLAEFKRIL
SLGSNPKHGSRLQARDPLAFESLSKTLKSLEKNLNVLRDVVNSKEEDVQR
LQSELREATKLSDEFEQDLKKELHKRLEMEKILTAKEQEIFPVEEDLYKS
ERKNSSIRGKVIVESLHRLV*

mRNA from alignment at tig00004400_pilon:130669..132531+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2349.t1 ID=Gchil2349.t1|Name=Gchil2349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00004400_pilon:130669..132531+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACATTGAAGCAATCCGTTGCGAGTCTGATGGCGTTCTTCGAGAA
GAAGCCTCTTGAAGCCCATTCGCAATGCAATAATACGAAGAATAATGGAA
ATTCAATGGAGAATTCCACGTTGAAACCCGAGCTGAAAGCTGACCTTGAT
ACCATGGCCCTTGAGTTTTGGAAGGAACTGCTCCGCCATGCGCAACAGAG
CAAAATTGAAAGCATCGATAAGGTTCTCTCAAGCGTCGGCGGTAATGTAA
AGGACAATTTGGCTGTCAGTGTTTCAACGGAGGTACACAAGCGGGAGCTA
CTTGCTACTCTTGAAGCAATCCACAAATCTCTCAAGAATCAATGTGGACA
GGGGAAAGGGTCGGTCAGCGAAGATCAAGTCTCTATCATCTCTTTGAAAC
GTCGCTTAGGGGAGATTTCAGAAAAAGCCCGGAATGCGAAGGAAGACCTT
CACCTAGCGAAGAAAGAAACTCATGACCTCGAATACGTCTGCGCAGAATA
CGAAGAGAGGAACGAGAAGCTTTCCAAATCCTTGTATGAAGCAAGGACCG
AAAACCGTGAGTTGAAAGCACATAAGAAGACTCTTTTAGAGACAACAAAA
GTGTTGGAAAGTAGAGTTCAGCGGTTGCAAACTGCAAGAGTAACAGGCGA
GGTAGAGGCGCTTCAGGCAATTCATAAAGCGGAGATGGCGGAATTGGTGG
CCACCCAGGCCTCCTTGAGATGCATGAACTACCACAAACAGCTCAGGGAA
GCGAAATGCTCCTCACATGCAGTGCAGGAACACCTGGATGGGCTAGAACG
GGTACTGGACGAGATGAAAATTTTGCTCACTAGTAGCTCCAGTACTTCGG
AGAGTTCTAGCCCTCGCAGACTAAAGAGGCCTCTCGAATTGCTTGTACGC
AAGGGGTCCAAACTACTTGGAAGAGTGGGAGCGTCAGTATTTCGTAGTAG
AAATGAAACAGACATGAATGGGAGAAACGACCAAGAATGGGTTTCTGAAA
CGGATATAAGAGCTACAAACGAACACGGGGATGACGCTTTGGCGCCATAC
AGTGAAAGCAAGCAGCCAAAAGTCCAAGTCTCTCGTTCGAACGACCAACA
CGAACGAAGAAGTCAAACAGGGCTTTTCCAGAGGAAGAAAACAGGCAAGG
TGTGCCATGTAACGAAGAAAGAAGAAGATGGGGGCCCTGCTGCAAACGAG
AACTTGGAAAATGGCTCAGCCCCGAAGAGCGGAAGGATGCTTCATGGCCT
TTTATCGCGCTCAAACACCCAAAGAAGGCGTTACAGTCCACCAAGACTTT
TCCAAAAGTTAACTAGTCGGCTTCGTCATCTGACGAGCGGGTCACGCTCT
GAAAGAGAAGCTATTGATAACTTAGAAGAACAGATCAACCAAACAGACAG
CATTCGGCGCGGATCCATTCGCGTCGATTCCGCGGAGACTGAAGTTGTTC
CAAACCTACAAGAGGGGCCAACCAATCTAGCAGAATTCAAACGCATTCTC
TCTCTAGGTTCCAATCCAAAACATGGTAGCCGGTTGCAAGCACGGGATCC
TTTGGCTTTTGAATCCTTATCAAAGACGCTGAAATCTCTTGAAAAGAACT
TGAACGTTCTAAGGGATGTTGTAAACAGCAAGGAGGAAGATGTACAGCGG
CTGCAATCAGAGCTTCGAGAGGCGACAAAACTTTCGGATGAATTTGAACA
AGATTTAAAGAAGGAGTTGCATAAGCGGTTGGAAATGGAAAAGATCTTGA
CTGCAAAAGAGCAGGAGATATTTCCTGTGGAGGAAGACCTCTACAAATCG
GAGCGTAAGAATTCCAGTATTAGGGGGAAAGTAATCGTAGAGTCATTGCA
TCGTTTAGTCTAG

Coding sequence (CDS) from alignment at tig00004400_pilon:130669..132531+

>Gchil2349.t1 ID=Gchil2349.t1|Name=Gchil2349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1863bp|location=Sequence derived from alignment at tig00004400_pilon:130669..132531+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACATTGAAGCAATCCGTTGCGAGTCTGATGGCGTTCTTCGAGAA
GAAGCCTCTTGAAGCCCATTCGCAATGCAATAATACGAAGAATAATGGAA
ATTCAATGGAGAATTCCACGTTGAAACCCGAGCTGAAAGCTGACCTTGAT
ACCATGGCCCTTGAGTTTTGGAAGGAACTGCTCCGCCATGCGCAACAGAG
CAAAATTGAAAGCATCGATAAGGTTCTCTCAAGCGTCGGCGGTAATGTAA
AGGACAATTTGGCTGTCAGTGTTTCAACGGAGGTACACAAGCGGGAGCTA
CTTGCTACTCTTGAAGCAATCCACAAATCTCTCAAGAATCAATGTGGACA
GGGGAAAGGGTCGGTCAGCGAAGATCAAGTCTCTATCATCTCTTTGAAAC
GTCGCTTAGGGGAGATTTCAGAAAAAGCCCGGAATGCGAAGGAAGACCTT
CACCTAGCGAAGAAAGAAACTCATGACCTCGAATACGTCTGCGCAGAATA
CGAAGAGAGGAACGAGAAGCTTTCCAAATCCTTGTATGAAGCAAGGACCG
AAAACCGTGAGTTGAAAGCACATAAGAAGACTCTTTTAGAGACAACAAAA
GTGTTGGAAAGTAGAGTTCAGCGGTTGCAAACTGCAAGAGTAACAGGCGA
GGTAGAGGCGCTTCAGGCAATTCATAAAGCGGAGATGGCGGAATTGGTGG
CCACCCAGGCCTCCTTGAGATGCATGAACTACCACAAACAGCTCAGGGAA
GCGAAATGCTCCTCACATGCAGTGCAGGAACACCTGGATGGGCTAGAACG
GGTACTGGACGAGATGAAAATTTTGCTCACTAGTAGCTCCAGTACTTCGG
AGAGTTCTAGCCCTCGCAGACTAAAGAGGCCTCTCGAATTGCTTGTACGC
AAGGGGTCCAAACTACTTGGAAGAGTGGGAGCGTCAGTATTTCGTAGTAG
AAATGAAACAGACATGAATGGGAGAAACGACCAAGAATGGGTTTCTGAAA
CGGATATAAGAGCTACAAACGAACACGGGGATGACGCTTTGGCGCCATAC
AGTGAAAGCAAGCAGCCAAAAGTCCAAGTCTCTCGTTCGAACGACCAACA
CGAACGAAGAAGTCAAACAGGGCTTTTCCAGAGGAAGAAAACAGGCAAGG
TGTGCCATGTAACGAAGAAAGAAGAAGATGGGGGCCCTGCTGCAAACGAG
AACTTGGAAAATGGCTCAGCCCCGAAGAGCGGAAGGATGCTTCATGGCCT
TTTATCGCGCTCAAACACCCAAAGAAGGCGTTACAGTCCACCAAGACTTT
TCCAAAAGTTAACTAGTCGGCTTCGTCATCTGACGAGCGGGTCACGCTCT
GAAAGAGAAGCTATTGATAACTTAGAAGAACAGATCAACCAAACAGACAG
CATTCGGCGCGGATCCATTCGCGTCGATTCCGCGGAGACTGAAGTTGTTC
CAAACCTACAAGAGGGGCCAACCAATCTAGCAGAATTCAAACGCATTCTC
TCTCTAGGTTCCAATCCAAAACATGGTAGCCGGTTGCAAGCACGGGATCC
TTTGGCTTTTGAATCCTTATCAAAGACGCTGAAATCTCTTGAAAAGAACT
TGAACGTTCTAAGGGATGTTGTAAACAGCAAGGAGGAAGATGTACAGCGG
CTGCAATCAGAGCTTCGAGAGGCGACAAAACTTTCGGATGAATTTGAACA
AGATTTAAAGAAGGAGTTGCATAAGCGGTTGGAAATGGAAAAGATCTTGA
CTGCAAAAGAGCAGGAGATATTTCCTGTGGAGGAAGACCTCTACAAATCG
GAGCGTAAGAATTCCAGTATTAGGGGGAAAGTAATCGTAGAGTCATTGCA
TCGTTTAGTCTAG