Gchil2313.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2313.t1
Unique NameGchil2313.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:1778460..1779211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2313Gchil2313Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 1778460..1779211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2313.t1Gchil2313.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 1778460..1779211 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2313.t1.start1Gchil2313.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 1778460..1778462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2313.t1.CDS1Gchil2313.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1778460..1778499 +
Gchil2313.t1.CDS2Gchil2313.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1778568..1779211 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2313.t1.exon1Gchil2313.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1778460..1778499 +
Gchil2313.t1.exon2Gchil2313.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1778568..1779211 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2313.t1.intron1Gchil2313.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 1778500..1778567 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2313.t1.stop1Gchil2313.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 1779209..1779211 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2313.t1 ID=Gchil2313.t1|Name=Gchil2313.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MKGANQTKATIWQGSARKKISALSGGPFESEIPENFENNGRRYCKADDGA
LQEKAGKKDSQGIFQYAAPFKFIEAVEYLTLQPKFGGDFVKNQAEVYLVN
GSDDSSRRAVEAGDRRHQLVGSGNDIIASTTSQQIKRAIPGLVCQVEIER
AKRDGGLQDRSAKIEITLTDLSNKLDIGKEVLHAIEKRNENAADADNDYC
LLQMLYKYYQEFREIMSDMLKESKVRM*
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spliced messenger RNA

>Gchil2313.t1 ID=Gchil2313.t1|Name=Gchil2313.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004419_pilon:1778460..1779211+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGCGCAAACCAAACTAAAGCTACCATATGGCAAGGCTCAGCTCG
CAAGAAAATTTCAGCACTTTCTGGGGGACCGTTCGAAAGTGAGATCCCAG
AAAATTTCGAGAACAACGGACGAAGATACTGCAAGGCTGACGATGGAGCA
TTACAGGAGAAAGCTGGGAAGAAAGATAGCCAGGGTATATTTCAATATGC
TGCTCCCTTCAAGTTTATTGAAGCGGTCGAATATCTAACGTTGCAGCCAA
AGTTTGGAGGCGATTTTGTCAAGAATCAAGCAGAGGTCTATCTCGTTAAT
GGGTCTGATGATTCCTCTAGGAGAGCAGTTGAAGCTGGGGACCGAAGGCA
TCAACTCGTCGGCTCTGGAAATGACATCATAGCTTCCACAACTTCTCAAC
AGATAAAGAGAGCTATACCTGGACTCGTGTGTCAAGTTGAGATTGAACGA
GCAAAAAGGGATGGAGGACTGCAGGACAGAAGTGCCAAAATTGAAATTAC
TTTGACTGATCTGTCGAATAAGTTGGACATTGGAAAAGAGGTTTTACATG
CAATCGAGAAGAGAAATGAGAATGCAGCAGATGCTGATAATGACTATTGC
CTACTTCAAATGCTGTATAAATATTATCAGGAATTCAGAGAGATTATGTC
AGATATGCTGAAAGAAAGTAAGGTACGTATGTAG
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protein sequence of Gchil2313.t1

>Gchil2313.t1 ID=Gchil2313.t1|Name=Gchil2313.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MKGANQTKATIWQGSARKKISALSGGPFESEIPENFENNGRRYCKADDGA
LQEKAGKKDSQGIFQYAAPFKFIEAVEYLTLQPKFGGDFVKNQAEVYLVN
GSDDSSRRAVEAGDRRHQLVGSGNDIIASTTSQQIKRAIPGLVCQVEIER
AKRDGGLQDRSAKIEITLTDLSNKLDIGKEVLHAIEKRNENAADADNDYC
LLQMLYKYYQEFREIMSDMLKESKVRM*
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mRNA from alignment at tig00004419_pilon:1778460..1779211+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2313.t1 ID=Gchil2313.t1|Name=Gchil2313.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=752bp|location=Sequence derived from alignment at tig00004419_pilon:1778460..1779211+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGGCGCAAACCAAACTAAAGCTACCATATGGCAAGGTATCGCTGA
TATCTGCGATGATTCCTATTTGATGTCCGGCAAGAGTGAATTACTCCGCT
GCAAATAGGCTCAGCTCGCAAGAAAATTTCAGCACTTTCTGGGGGACCGT
TCGAAAGTGAGATCCCAGAAAATTTCGAGAACAACGGACGAAGATACTGC
AAGGCTGACGATGGAGCATTACAGGAGAAAGCTGGGAAGAAAGATAGCCA
GGGTATATTTCAATATGCTGCTCCCTTCAAGTTTATTGAAGCGGTCGAAT
ATCTAACGTTGCAGCCAAAGTTTGGAGGCGATTTTGTCAAGAATCAAGCA
GAGGTCTATCTCGTTAATGGGTCTGATGATTCCTCTAGGAGAGCAGTTGA
AGCTGGGGACCGAAGGCATCAACTCGTCGGCTCTGGAAATGACATCATAG
CTTCCACAACTTCTCAACAGATAAAGAGAGCTATACCTGGACTCGTGTGT
CAAGTTGAGATTGAACGAGCAAAAAGGGATGGAGGACTGCAGGACAGAAG
TGCCAAAATTGAAATTACTTTGACTGATCTGTCGAATAAGTTGGACATTG
GAAAAGAGGTTTTACATGCAATCGAGAAGAGAAATGAGAATGCAGCAGAT
GCTGATAATGACTATTGCCTACTTCAAATGCTGTATAAATATTATCAGGA
ATTCAGAGAGATTATGTCAGATATGCTGAAAGAAAGTAAGGTACGTATGT
AG
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Coding sequence (CDS) from alignment at tig00004419_pilon:1778460..1779211+

>Gchil2313.t1 ID=Gchil2313.t1|Name=Gchil2313.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004419_pilon:1778460..1779211+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGGCGCAAACCAAACTAAAGCTACCATATGGCAAGGCTCAGCTCG
CAAGAAAATTTCAGCACTTTCTGGGGGACCGTTCGAAAGTGAGATCCCAG
AAAATTTCGAGAACAACGGACGAAGATACTGCAAGGCTGACGATGGAGCA
TTACAGGAGAAAGCTGGGAAGAAAGATAGCCAGGGTATATTTCAATATGC
TGCTCCCTTCAAGTTTATTGAAGCGGTCGAATATCTAACGTTGCAGCCAA
AGTTTGGAGGCGATTTTGTCAAGAATCAAGCAGAGGTCTATCTCGTTAAT
GGGTCTGATGATTCCTCTAGGAGAGCAGTTGAAGCTGGGGACCGAAGGCA
TCAACTCGTCGGCTCTGGAAATGACATCATAGCTTCCACAACTTCTCAAC
AGATAAAGAGAGCTATACCTGGACTCGTGTGTCAAGTTGAGATTGAACGA
GCAAAAAGGGATGGAGGACTGCAGGACAGAAGTGCCAAAATTGAAATTAC
TTTGACTGATCTGTCGAATAAGTTGGACATTGGAAAAGAGGTTTTACATG
CAATCGAGAAGAGAAATGAGAATGCAGCAGATGCTGATAATGACTATTGC
CTACTTCAAATGCTGTATAAATATTATCAGGAATTCAGAGAGATTATGTC
AGATATGCTGAAAGAAAGTAAGGTACGTATGTAG
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