Gchil2307.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2307.t1
Unique NameGchil2307.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:1707330..1708382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6326.BUX.s01038.158
PFAMsrve,zf-H2C2
Max annot lvl33208|Metazoa
Evalue7.88e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A25R@33154|Opisthokonta,3BQ0A@33208|Metazoa,3E4KA@33213|Bilateria,40QVF@6231|Nematoda,1M0JP@119089|Chromadorea
DescriptionIntegrase core domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2307Gchil2307Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 1707330..1708382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2307.t1.stop1Gchil2307.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 1707330..1707332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2307.t1.CDS1Gchil2307.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1707330..1708382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2307.t1.exon1Gchil2307.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1707330..1708382 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2307.t1.start1Gchil2307.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 1708380..1708382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2307.t1Gchil2307.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 1707330..1708382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2307.t1 ID=Gchil2307.t1|Name=Gchil2307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MDIVGPLYKSSDGKRFVSVITDRFTKLTRALSLGKTTATDVATGFFSHWV
HPYGMPLYLLTDNGSQFVSQFFSHIGATLGIKHVTTTAYHPQANGQAKRF
NCTLLDRLVNYISEHQLDWHDYVEPLVYVYNTQVHGCTGTTSFDITLARS
PRPIAVDLQESTIPQDTTKGMTPTQAKRYWRLRIDRIIQSARAALTRAQR
RYKVHFRKAVWNTLTFEKGELVYLDRRPKHTDEFEDTMTKLLPRSTGPEN
VLEANQYTITLLIDGLQDTISIDRVTRAPSSPASPKSQPPGPTESLRPQV
DAQVSIFPKAVSTDPTSPTAQMVTSNDDDPYLPIDYDGFASVDHTHLPEK
*
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spliced messenger RNA

>Gchil2307.t1 ID=Gchil2307.t1|Name=Gchil2307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004419_pilon:1707330..1708382- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATAGTTGGGCCTTTGTACAAGTCTTCCGATGGGAAACGGTTTGT
TTCGGTCATAACCGATAGGTTTACTAAACTTACACGAGCCCTATCCCTAG
GGAAGACAACAGCCACGGATGTCGCCACGGGCTTCTTTTCCCACTGGGTA
CATCCATATGGCATGCCACTCTATCTCCTTACGGATAACGGCAGCCAGTT
TGTATCCCAATTCTTCTCACACATTGGTGCTACCTTAGGAATCAAACATG
TTACTACCACGGCGTACCACCCGCAGGCCAATGGCCAAGCCAAACGCTTC
AACTGCACCCTTCTAGACCGATTGGTAAACTACATATCGGAGCACCAATT
GGACTGGCACGACTACGTTGAGCCACTGGTTTATGTTTACAACACGCAGG
TGCACGGGTGCACGGGGACAACGTCTTTCGACATAACGCTAGCGAGATCG
CCGCGGCCGATAGCTGTTGACCTTCAGGAGTCTACCATACCCCAGGACAC
AACCAAAGGGATGACTCCGACCCAGGCGAAGCGCTACTGGCGCCTACGCA
TCGACCGCATTATCCAATCGGCCAGAGCTGCACTAACCAGAGCCCAACGG
CGGTACAAAGTCCATTTCAGGAAAGCCGTTTGGAACACACTGACCTTTGA
AAAAGGAGAACTTGTTTACCTGGACCGGCGACCAAAGCATACTGATGAAT
TCGAGGACACTATGACCAAGCTCTTACCCCGCTCTACGGGACCAGAAAAC
GTCCTTGAGGCCAATCAATACACCATCACGCTACTAATTGACGGCCTGCA
GGATACTATCTCTATTGACCGGGTTACACGAGCCCCCAGCTCTCCTGCAT
CACCGAAGTCCCAGCCCCCTGGCCCAACGGAATCACTACGACCACAGGTC
GACGCTCAAGTCTCCATATTCCCAAAAGCAGTTTCCACGGACCCGACTAG
CCCCACGGCCCAGATGGTCACTTCCAATGACGATGACCCATATCTTCCAA
TCGACTACGATGGATTCGCCTCTGTGGACCACACTCACCTTCCGGAGAAG
TAA
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protein sequence of Gchil2307.t1

>Gchil2307.t1 ID=Gchil2307.t1|Name=Gchil2307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MDIVGPLYKSSDGKRFVSVITDRFTKLTRALSLGKTTATDVATGFFSHWV
HPYGMPLYLLTDNGSQFVSQFFSHIGATLGIKHVTTTAYHPQANGQAKRF
NCTLLDRLVNYISEHQLDWHDYVEPLVYVYNTQVHGCTGTTSFDITLARS
PRPIAVDLQESTIPQDTTKGMTPTQAKRYWRLRIDRIIQSARAALTRAQR
RYKVHFRKAVWNTLTFEKGELVYLDRRPKHTDEFEDTMTKLLPRSTGPEN
VLEANQYTITLLIDGLQDTISIDRVTRAPSSPASPKSQPPGPTESLRPQV
DAQVSIFPKAVSTDPTSPTAQMVTSNDDDPYLPIDYDGFASVDHTHLPEK
*
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mRNA from alignment at tig00004419_pilon:1707330..1708382-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2307.t1 ID=Gchil2307.t1|Name=Gchil2307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004419_pilon:1707330..1708382- (Gracilaria chilensis NLEC103_M9 male)
ATGGATATAGTTGGGCCTTTGTACAAGTCTTCCGATGGGAAACGGTTTGT
TTCGGTCATAACCGATAGGTTTACTAAACTTACACGAGCCCTATCCCTAG
GGAAGACAACAGCCACGGATGTCGCCACGGGCTTCTTTTCCCACTGGGTA
CATCCATATGGCATGCCACTCTATCTCCTTACGGATAACGGCAGCCAGTT
TGTATCCCAATTCTTCTCACACATTGGTGCTACCTTAGGAATCAAACATG
TTACTACCACGGCGTACCACCCGCAGGCCAATGGCCAAGCCAAACGCTTC
AACTGCACCCTTCTAGACCGATTGGTAAACTACATATCGGAGCACCAATT
GGACTGGCACGACTACGTTGAGCCACTGGTTTATGTTTACAACACGCAGG
TGCACGGGTGCACGGGGACAACGTCTTTCGACATAACGCTAGCGAGATCG
CCGCGGCCGATAGCTGTTGACCTTCAGGAGTCTACCATACCCCAGGACAC
AACCAAAGGGATGACTCCGACCCAGGCGAAGCGCTACTGGCGCCTACGCA
TCGACCGCATTATCCAATCGGCCAGAGCTGCACTAACCAGAGCCCAACGG
CGGTACAAAGTCCATTTCAGGAAAGCCGTTTGGAACACACTGACCTTTGA
AAAAGGAGAACTTGTTTACCTGGACCGGCGACCAAAGCATACTGATGAAT
TCGAGGACACTATGACCAAGCTCTTACCCCGCTCTACGGGACCAGAAAAC
GTCCTTGAGGCCAATCAATACACCATCACGCTACTAATTGACGGCCTGCA
GGATACTATCTCTATTGACCGGGTTACACGAGCCCCCAGCTCTCCTGCAT
CACCGAAGTCCCAGCCCCCTGGCCCAACGGAATCACTACGACCACAGGTC
GACGCTCAAGTCTCCATATTCCCAAAAGCAGTTTCCACGGACCCGACTAG
CCCCACGGCCCAGATGGTCACTTCCAATGACGATGACCCATATCTTCCAA
TCGACTACGATGGATTCGCCTCTGTGGACCACACTCACCTTCCGGAGAAG
TAA
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Coding sequence (CDS) from alignment at tig00004419_pilon:1707330..1708382-

>Gchil2307.t1 ID=Gchil2307.t1|Name=Gchil2307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00004419_pilon:1707330..1708382- (Gracilaria chilensis NLEC103_M9 male)
ATGGATATAGTTGGGCCTTTGTACAAGTCTTCCGATGGGAAACGGTTTGT
TTCGGTCATAACCGATAGGTTTACTAAACTTACACGAGCCCTATCCCTAG
GGAAGACAACAGCCACGGATGTCGCCACGGGCTTCTTTTCCCACTGGGTA
CATCCATATGGCATGCCACTCTATCTCCTTACGGATAACGGCAGCCAGTT
TGTATCCCAATTCTTCTCACACATTGGTGCTACCTTAGGAATCAAACATG
TTACTACCACGGCGTACCACCCGCAGGCCAATGGCCAAGCCAAACGCTTC
AACTGCACCCTTCTAGACCGATTGGTAAACTACATATCGGAGCACCAATT
GGACTGGCACGACTACGTTGAGCCACTGGTTTATGTTTACAACACGCAGG
TGCACGGGTGCACGGGGACAACGTCTTTCGACATAACGCTAGCGAGATCG
CCGCGGCCGATAGCTGTTGACCTTCAGGAGTCTACCATACCCCAGGACAC
AACCAAAGGGATGACTCCGACCCAGGCGAAGCGCTACTGGCGCCTACGCA
TCGACCGCATTATCCAATCGGCCAGAGCTGCACTAACCAGAGCCCAACGG
CGGTACAAAGTCCATTTCAGGAAAGCCGTTTGGAACACACTGACCTTTGA
AAAAGGAGAACTTGTTTACCTGGACCGGCGACCAAAGCATACTGATGAAT
TCGAGGACACTATGACCAAGCTCTTACCCCGCTCTACGGGACCAGAAAAC
GTCCTTGAGGCCAATCAATACACCATCACGCTACTAATTGACGGCCTGCA
GGATACTATCTCTATTGACCGGGTTACACGAGCCCCCAGCTCTCCTGCAT
CACCGAAGTCCCAGCCCCCTGGCCCAACGGAATCACTACGACCACAGGTC
GACGCTCAAGTCTCCATATTCCCAAAAGCAGTTTCCACGGACCCGACTAG
CCCCACGGCCCAGATGGTCACTTCCAATGACGATGACCCATATCTTCCAA
TCGACTACGATGGATTCGCCTCTGTGGACCACACTCACCTTCCGGAGAAG
TAA
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